Wall clock time and date at job start Tue Mar 31 2020 06:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 120.00261 * 2 1 4 4 H 1.48501 * 109.47020 * 271.19489 * 3 2 1 5 5 H 1.48498 * 109.47013 * 31.19579 * 3 2 1 6 6 H 1.48495 * 109.47226 * 151.19667 * 3 2 1 7 7 C 1.38818 * 120.00024 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99798 * 3.51113 * 7 2 1 9 9 N 1.36932 * 120.00344 * 183.50609 * 7 2 1 10 10 C 1.46494 * 120.00243 * 184.91925 * 9 7 2 11 11 C 1.53006 * 109.47346 * 185.11846 * 10 9 7 12 12 C 1.52988 * 115.54885 * 65.19793 * 11 10 9 13 13 C 1.53004 * 109.47356 * 40.14848 * 12 11 10 14 14 N 1.46504 * 109.47326 * 178.80313 * 13 12 11 15 15 C 1.34777 * 119.99839 * 184.87920 * 14 13 12 16 16 O 1.21577 * 119.99910 * 354.22349 * 15 14 13 17 17 C 1.47621 * 119.99513 * 174.49857 * 15 14 13 18 18 N 1.33052 * 120.53344 * 359.44185 * 17 15 14 19 19 N 1.28711 * 120.36782 * 179.78144 * 18 17 15 20 20 C 1.32940 * 121.55448 * 0.48930 * 19 18 17 21 21 O 1.35292 * 119.47441 * 179.75608 * 20 19 18 22 22 N 1.32474 * 121.06294 * 359.77506 * 20 19 18 23 23 C 1.32862 * 119.50947 * 359.97438 * 22 20 19 24 24 O 1.35289 * 120.71794 * 179.97438 * 23 22 20 25 25 C 1.53001 * 117.51833 * 210.90381 * 11 10 9 26 26 C 1.52996 * 60.00068 * 107.47452 * 25 11 10 27 27 H 0.96995 * 119.99737 * 0.02562 * 1 2 3 28 28 H 0.97005 * 119.99834 * 4.91105 * 9 7 2 29 29 H 1.09001 * 109.47543 * 65.11570 * 10 9 7 30 30 H 1.09000 * 109.47406 * 305.11469 * 10 9 7 31 31 H 1.08998 * 109.47681 * 280.14690 * 12 11 10 32 32 H 1.09005 * 109.47264 * 160.14735 * 12 11 10 33 33 H 1.09005 * 109.46677 * 58.80248 * 13 12 11 34 34 H 1.09001 * 109.46850 * 298.80589 * 13 12 11 35 35 H 0.96997 * 119.99535 * 4.87377 * 14 13 12 36 36 H 0.96701 * 113.99912 * 270.02336 * 21 20 19 37 37 H 0.96700 * 113.99589 * 270.02128 * 24 23 22 38 38 H 1.08990 * 117.49768 * 214.97100 * 25 11 10 39 39 H 1.09002 * 117.49540 * 359.97438 * 25 11 10 40 40 H 1.09001 * 117.50390 * 252.50822 * 26 25 11 41 41 H 1.09008 * 117.49915 * 107.48699 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4725 2.0609 -1.3998 5 1 1.4606 2.6452 0.7252 6 1 3.5602 1.4329 0.6745 7 6 2.0103 -1.2022 0.0005 8 1 1.4718 -2.1366 -0.0563 9 7 3.3777 -1.2033 0.0731 10 6 4.1159 -2.4641 -0.0348 11 6 5.6048 -2.2054 0.2042 12 6 5.9745 -1.7305 1.6108 13 6 5.1461 -2.4987 2.6426 14 7 5.5206 -2.0643 3.9908 15 6 4.9895 -2.6764 5.0677 16 8 4.1224 -3.5163 4.9236 17 6 5.4564 -2.3225 6.4227 18 7 6.4087 -1.4088 6.5923 19 7 6.8105 -1.0996 7.7754 20 6 6.3019 -1.6816 8.8571 21 8 6.7589 -1.3279 10.0804 22 7 5.3550 -2.6025 8.7565 23 6 4.9054 -2.9505 7.5556 24 8 3.9394 -3.8885 7.4245 25 6 6.6046 -3.1071 -0.5226 26 6 6.4226 -1.6539 -0.9654 27 1 -0.4849 0.8400 -0.0004 28 1 3.8576 -0.3693 0.1958 29 1 3.9753 -2.8834 -1.0311 30 1 3.7451 -3.1673 0.7109 31 1 5.7681 -0.6640 1.7003 32 1 7.0347 -1.9115 1.7885 33 1 5.3367 -3.5669 2.5390 34 1 4.0869 -2.3009 2.4782 35 1 6.1507 -1.3364 4.1082 36 1 7.5094 -1.8547 10.3873 37 1 4.2765 -4.7907 7.3377 38 1 7.5257 -3.3620 0.0013 39 1 6.2017 -3.8851 -1.1710 40 1 5.9000 -1.4757 -1.9052 41 1 7.2242 -0.9527 -0.7327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165993358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:51 Heat of formation + Delta-G solvation = 14.534348 kcal Electronic energy + Delta-G solvation = -26809.133438 eV Core-core repulsion = 22727.995758 eV Total energy + Delta-G solvation = -4081.137680 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.57649 -39.89099 -38.79893 -38.29861 -38.17701 -35.04013 -34.80637 -34.05782 -32.54074 -31.12767 -30.05491 -26.74884 -26.23322 -25.54628 -23.58064 -22.51607 -21.83084 -21.39723 -20.58367 -20.01256 -19.09581 -18.72581 -18.13105 -17.48952 -17.28946 -16.09667 -15.77424 -15.38971 -15.10721 -14.86275 -14.66788 -14.45782 -14.00882 -13.64388 -13.50854 -13.23461 -13.14433 -12.89964 -12.63197 -12.39208 -12.12576 -12.04752 -11.98466 -11.64949 -11.47314 -11.17417 -10.91276 -10.76177 -10.46630 -10.33580 -10.14107 -9.98227 -9.88265 -9.60085 -9.47497 -9.10000 -8.85783 -7.18852 -5.73803 -3.08992 -0.50226 -0.21765 1.87554 2.23642 2.46158 2.67772 2.96951 3.26975 3.37524 3.41846 3.47220 3.86650 3.91440 4.13171 4.42476 4.61447 4.81507 4.87605 4.93460 5.03566 5.18610 5.35377 5.54014 5.62797 5.66730 5.77076 5.84121 5.89263 6.06765 6.10885 6.24697 6.26655 6.32580 6.38273 6.55731 6.65163 6.71780 6.73135 7.23341 7.60170 7.90244 8.04012 8.45630 9.25487 9.97291 10.18022 11.44692 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012567 B = 0.003143 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.467301 B = 8905.651657 C = 9737.693474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.886 3.114 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.751 5.751 10 C 0.189 3.811 11 C -0.127 4.127 12 C -0.087 4.087 13 C 0.116 3.884 14 N -0.703 5.703 15 C 0.576 3.424 16 O -0.501 6.501 17 C -0.048 4.048 18 N -0.113 5.113 19 N -0.283 5.283 20 C 0.480 3.520 21 O -0.446 6.446 22 N -0.509 5.509 23 C 0.423 3.577 24 O -0.437 6.437 25 C -0.171 4.171 26 C -0.170 4.170 27 H 0.259 0.741 28 H 0.362 0.638 29 H 0.025 0.975 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.408 0.592 36 H 0.422 0.578 37 H 0.422 0.578 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.512 -8.074 14.464 26.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.716 3.284 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.372 4.372 8 H 0.107 0.893 9 N -0.397 5.397 10 C 0.062 3.938 11 C -0.128 4.128 12 C -0.125 4.125 13 C -0.006 4.006 14 N -0.354 5.354 15 C 0.356 3.644 16 O -0.374 6.374 17 C -0.201 4.201 18 N 0.028 4.972 19 N -0.146 5.146 20 C 0.175 3.825 21 O -0.248 6.248 22 N -0.252 5.252 23 C 0.225 3.775 24 O -0.245 6.245 25 C -0.209 4.209 26 C -0.207 4.207 27 H 0.069 0.931 28 H 0.196 0.804 29 H 0.043 0.957 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.243 0.757 36 H 0.283 0.717 37 H 0.286 0.714 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 19.541 -7.281 14.619 25.468 hybrid contribution 0.763 0.438 0.303 0.930 sum 20.304 -6.843 14.922 26.111 Atomic orbital electron populations 1.69705 1.05125 1.25744 1.57556 1.24681 0.95187 0.97131 1.02083 0.86535 0.79026 0.85144 0.77657 1.21185 1.21905 1.20494 1.19050 0.80775 0.94678 1.42694 0.89267 1.42679 1.04057 1.03466 1.89498 1.20225 0.85523 0.89703 0.98381 1.21642 0.94764 1.04383 0.92055 1.21199 0.98698 1.00536 0.92032 1.21682 1.01842 0.98933 0.78166 1.45858 1.46403 1.37115 1.06029 1.16968 0.82459 0.82844 0.82106 1.90915 1.28683 1.32773 1.85009 1.24173 0.98383 0.99698 0.97881 1.73965 1.04852 1.05014 1.13390 1.73836 1.24076 1.22224 0.94426 1.21869 0.87455 0.85609 0.87581 1.84719 1.53662 1.59912 1.26527 1.68209 1.12524 1.16718 1.27740 1.19917 0.82944 0.89110 0.85556 1.84730 1.27150 1.19372 1.93232 1.23030 1.00116 0.93942 1.03799 1.22968 1.02352 0.96186 0.99175 0.93109 0.80441 0.95730 0.94402 0.90744 0.91608 0.90869 0.88573 0.75676 0.71655 0.71373 0.89136 0.88738 0.88427 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.63 13.97 55.49 0.78 -28.86 16 2 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 3 Si 0.89 22.29 27.90 -169.99 -4.74 17.54 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.28 -6.49 6.30 56.52 0.36 -6.13 16 7 C -0.24 -6.81 10.47 -15.06 -0.16 -6.97 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 9 N -0.75 -17.29 5.29 -59.91 -0.32 -17.61 16 10 C 0.19 3.49 5.31 -4.04 -0.02 3.47 16 11 C -0.13 -1.79 1.83 -154.51 -0.28 -2.08 16 12 C -0.09 -1.09 5.37 -26.74 -0.14 -1.23 16 13 C 0.12 1.59 4.80 -4.04 -0.02 1.57 16 14 N -0.70 -8.66 5.54 -61.32 -0.34 -9.00 16 15 C 0.58 7.71 7.79 -12.43 -0.10 7.61 16 16 O -0.50 -8.07 15.28 -16.07 -0.25 -8.32 16 17 C -0.05 -0.56 6.85 -82.55 -0.57 -1.12 16 18 N -0.11 -1.28 10.89 33.45 0.36 -0.91 16 19 N -0.28 -3.08 11.60 29.21 0.34 -2.74 16 20 C 0.48 4.67 8.81 -90.58 -0.80 3.88 16 21 O -0.45 -3.11 13.63 -17.57 -0.24 -3.35 16 22 N -0.51 -5.38 10.58 -14.32 -0.15 -5.53 16 23 C 0.42 4.60 7.85 -16.15 -0.13 4.47 16 24 O -0.44 -4.42 11.76 -38.93 -0.46 -4.88 16 25 C -0.17 -1.96 9.87 -26.73 -0.26 -2.22 16 26 C -0.17 -2.18 9.97 -26.73 -0.27 -2.45 16 27 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 28 H 0.36 8.21 5.46 -40.82 -0.22 7.99 16 29 H 0.02 0.47 8.09 -51.93 -0.42 0.05 16 30 H 0.04 0.72 6.69 -51.93 -0.35 0.37 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.66 7.95 -51.93 -0.41 0.24 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.10 1.71 6.84 -51.93 -0.36 1.35 16 35 H 0.41 4.26 7.86 -40.82 -0.32 3.94 16 36 H 0.42 0.35 9.06 45.56 0.41 0.77 16 37 H 0.42 2.01 9.06 45.56 0.41 2.43 16 38 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.09 1.02 8.14 -51.92 -0.42 0.59 16 LS Contribution 357.55 15.07 5.39 5.39 Total: -1.00 -36.74 357.55 -5.86 -42.59 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -3.39 Total: 10.69 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -2.84 Total: 4.98 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: 0.67 Total: -64.65 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.94 Total: -16.55 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.74 Total: 17.54 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.74 -5.86 -42.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165993358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.128 kcal (2) G-P(sol) polarization free energy of solvation -36.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds