Wall clock time and date at job start Tue Mar 31 2020 05:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.87149 * 2 1 4 4 C 1.54315 * 109.88508 * 121.01541 * 2 1 3 5 5 H 1.09005 * 110.72207 * 215.59089 * 4 2 1 6 6 N 1.46497 * 110.72358 * 338.86239 * 4 2 1 7 7 C 1.36937 * 120.00614 * 199.98091 * 6 4 2 8 8 H 1.08004 * 119.99731 * 359.97438 * 7 6 4 9 9 C 1.38807 * 120.00477 * 180.02562 * 7 6 4 10 10 N 1.31614 * 120.00382 * 179.97438 * 9 7 6 11 11 Si 1.86808 * 119.99790 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.46773 * 90.00662 * 11 9 7 13 13 H 1.48497 * 109.47129 * 210.00112 * 11 9 7 14 14 H 1.48499 * 109.47224 * 330.00526 * 11 9 7 15 15 C 1.55156 * 102.94436 * 97.22518 * 4 2 1 16 16 C 1.54906 * 101.61451 * 35.48113 * 15 4 2 17 17 N 1.47017 * 109.87941 * 238.82754 * 2 1 3 18 18 C 1.34776 * 125.65312 * 59.58028 * 17 2 1 19 19 O 1.21346 * 119.99683 * 359.97438 * 18 17 2 20 20 C 1.49452 * 120.00178 * 180.02562 * 18 17 2 21 21 O 1.21346 * 120.00139 * 359.97438 * 20 18 17 22 22 N 1.34776 * 120.00178 * 180.02562 * 20 18 17 23 23 C 1.46492 * 120.00207 * 179.97438 * 22 20 18 24 24 C 1.53003 * 109.47139 * 179.97438 * 23 22 20 25 25 F 1.39896 * 109.47108 * 59.99988 * 24 23 22 26 26 F 1.39907 * 109.47299 * 179.97438 * 24 23 22 27 27 F 1.39899 * 109.47247 * 300.00093 * 24 23 22 28 28 H 1.09004 * 109.47271 * 298.98374 * 1 2 3 29 29 H 1.08999 * 109.47439 * 58.98369 * 1 2 3 30 30 H 1.09000 * 109.46977 * 178.98918 * 1 2 3 31 31 H 0.97005 * 119.99905 * 19.97312 * 6 4 2 32 32 H 0.96997 * 120.00558 * 179.97438 * 10 9 7 33 33 H 1.09002 * 111.00677 * 153.57697 * 15 4 2 34 34 H 1.09002 * 111.00564 * 277.38955 * 15 4 2 35 35 H 1.09008 * 110.36753 * 81.85112 * 16 15 4 36 36 H 1.09001 * 110.37094 * 204.16995 * 16 15 4 37 37 H 0.96999 * 119.99729 * 359.97438 * 22 20 18 38 38 H 1.09002 * 109.47033 * 299.99606 * 23 22 20 39 39 H 1.09003 * 109.47354 * 59.99934 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7477 1.2437 5 1 2.9657 -0.2808 1.6186 6 7 1.0294 -0.7994 2.2886 7 6 1.3879 -1.0366 3.5888 8 1 2.4267 -1.1859 3.8438 9 6 0.4161 -1.0861 4.5787 10 7 0.7607 -1.3145 5.8283 11 14 -1.3807 -0.8285 4.1375 12 1 -2.0022 -2.1367 3.8092 13 1 -2.0909 -0.2185 5.2901 14 1 -1.4774 0.0743 2.9624 15 6 2.3519 -2.1685 0.6954 16 6 2.8564 -1.8517 -0.7346 17 7 2.0299 -0.7156 -1.1829 18 6 1.7756 -0.3876 -2.4652 19 8 1.0787 0.5728 -2.7189 20 6 2.3509 -1.2074 -3.5745 21 8 3.0474 -2.1681 -3.3208 22 7 2.0970 -0.8790 -4.8568 23 6 2.6614 -1.6822 -5.9441 24 6 2.2227 -1.0998 -7.2892 25 9 2.6789 0.2182 -7.3977 26 9 2.7622 -1.8665 -8.3277 27 9 0.8263 -1.1182 -7.3722 28 1 -0.3634 0.4980 0.8990 29 1 -0.3634 0.5295 -0.8807 30 1 -0.3633 -1.0275 -0.0181 31 1 0.0963 -0.6656 2.0595 32 1 0.0817 -1.3487 6.5201 33 1 3.1271 -2.6600 1.2833 34 1 1.4454 -2.7729 0.6649 35 1 3.9089 -1.5690 -0.7116 36 1 2.7079 -2.7111 -1.3884 37 1 1.5405 -0.1109 -5.0596 38 1 3.7494 -1.6682 -5.8792 39 1 2.3056 -2.7091 -5.8598 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179812639.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:45 Heat of formation + Delta-G solvation = -209.268773 kcal Electronic energy + Delta-G solvation = -27782.331585 eV Core-core repulsion = 23117.339581 eV Total energy + Delta-G solvation = -4664.992003 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.124 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.24002 -48.74735 -48.72634 -42.06307 -40.36339 -38.94879 -36.66994 -35.88129 -33.65108 -32.23571 -31.28457 -30.76131 -26.98649 -26.47600 -24.92363 -24.21210 -23.12902 -21.66486 -20.62303 -19.89360 -19.70779 -19.54945 -19.41222 -18.09739 -17.99052 -17.45513 -16.87535 -16.74049 -16.18550 -16.03573 -15.76319 -15.61425 -15.38839 -15.19323 -15.13677 -14.87920 -14.85632 -14.80774 -14.72554 -14.18941 -14.10994 -13.76016 -13.54424 -13.20831 -13.09639 -13.04453 -12.87776 -12.83212 -12.49674 -12.21521 -11.92984 -11.71163 -11.53741 -10.99088 -10.71813 -10.68943 -9.88361 -9.31912 -8.00974 -5.35059 0.20756 0.86812 1.37881 1.40157 1.47081 1.55487 1.99508 2.15267 2.48445 2.57377 2.90473 2.99983 3.21251 3.29373 3.50832 3.62083 3.82861 4.06325 4.07276 4.20480 4.31146 4.32612 4.43745 4.55281 4.63597 4.78312 4.88205 5.01199 5.05444 5.16905 5.22322 5.40893 5.69649 5.79542 6.18551 6.22690 6.42265 6.75980 7.07896 7.82274 8.00565 9.20022 Molecular weight = 323.12amu Principal moments of inertia in cm(-1) A = 0.032557 B = 0.002561 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.827516 B =10931.431277 C =11318.564631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 H 0.087 0.913 4 C 0.170 3.830 5 H 0.073 0.927 6 N -0.744 5.744 7 C -0.226 4.226 8 H 0.065 0.935 9 C -0.059 4.059 10 N -0.981 5.981 11 Si 0.940 3.060 12 H -0.280 1.280 13 H -0.297 1.297 14 H -0.250 1.250 15 C -0.148 4.148 16 C 0.106 3.894 17 N -0.577 5.577 18 C 0.517 3.483 19 O -0.541 6.541 20 C 0.529 3.471 21 O -0.514 6.514 22 N -0.697 5.697 23 C 0.078 3.922 24 C 0.456 3.544 25 F -0.182 7.182 26 F -0.172 7.172 27 F -0.183 7.183 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.370 0.630 32 H 0.257 0.743 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.423 0.577 38 H 0.138 0.862 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.266 -0.600 -29.245 29.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.028 3.972 3 H 0.105 0.895 4 C 0.060 3.940 5 H 0.091 0.909 6 N -0.390 5.390 7 C -0.357 4.357 8 H 0.083 0.917 9 C -0.251 4.251 10 N -0.631 5.631 11 Si 0.768 3.232 12 H -0.206 1.206 13 H -0.224 1.224 14 H -0.175 1.175 15 C -0.189 4.189 16 C -0.016 4.016 17 N -0.310 5.310 18 C 0.300 3.700 19 O -0.419 6.419 20 C 0.310 3.690 21 O -0.389 6.389 22 N -0.353 5.353 23 C -0.046 4.046 24 C 0.401 3.599 25 F -0.164 7.164 26 F -0.153 7.153 27 F -0.164 7.164 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.207 0.793 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.121 0.879 37 H 0.261 0.739 38 H 0.156 0.844 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.506 -0.781 -29.130 29.486 hybrid contribution -1.474 0.558 0.139 1.582 sum 3.032 -0.224 -28.991 29.150 Atomic orbital electron populations 1.22039 0.94872 1.02347 1.02622 1.21792 0.95079 0.96338 0.84033 0.89538 1.21347 0.92015 0.94327 0.86275 0.90896 1.42945 1.05359 1.87012 1.03688 1.19020 0.94095 1.38834 0.83724 0.91667 1.25387 1.01869 1.02752 0.95087 1.69853 1.33986 1.58385 1.00901 0.85649 0.81392 0.78461 0.77686 1.20578 1.22431 1.17484 1.23419 1.01931 0.98729 0.94777 1.22730 0.94864 0.88759 0.95235 1.48416 1.48411 1.30258 1.03918 1.19755 0.82094 0.85148 0.82970 1.90757 1.38836 1.28978 1.83352 1.19692 0.81165 0.84598 0.83587 1.90768 1.36951 1.27688 1.83443 1.45302 1.52788 1.33088 1.04111 1.22754 1.03912 0.97833 0.80133 1.20454 0.75116 0.76308 0.88007 1.93242 1.88697 1.37738 1.96692 1.93244 1.85804 1.75263 1.60986 1.93243 1.30136 1.96247 1.96808 0.91542 0.91017 0.92471 0.79268 0.93394 0.89642 0.91615 0.89322 0.87889 0.73916 0.84424 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.94 7.95 71.98 0.57 -4.36 16 2 C 0.13 3.91 3.48 45.34 0.16 4.07 16 3 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 4 C 0.17 5.81 3.46 46.18 0.16 5.97 16 5 H 0.07 2.53 8.12 -2.38 -0.02 2.52 16 6 N -0.74 -32.24 4.82 -317.34 -1.53 -33.77 16 7 C -0.23 -12.12 10.46 84.03 0.88 -11.24 16 8 H 0.07 3.80 8.06 -2.91 -0.02 3.77 16 9 C -0.06 -3.37 5.50 84.86 0.47 -2.91 16 10 N -0.98 -61.23 13.97 21.65 0.30 -60.93 16 11 Si 0.94 44.04 27.74 68.60 1.90 45.95 16 12 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 13 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 14 H -0.25 -10.50 6.45 99.48 0.64 -9.86 16 15 C -0.15 -4.36 6.77 31.98 0.22 -4.14 16 16 C 0.11 2.53 6.06 86.85 0.53 3.06 16 17 N -0.58 -15.09 3.08 -789.52 -2.43 -17.53 16 18 C 0.52 12.93 7.70 87.27 0.67 13.61 16 19 O -0.54 -15.42 15.39 -3.23 -0.05 -15.47 16 20 C 0.53 10.49 7.86 87.27 0.69 11.17 16 21 O -0.51 -11.17 13.78 -3.23 -0.04 -11.21 16 22 N -0.70 -9.80 5.41 -464.42 -2.51 -12.31 16 23 C 0.08 0.68 5.64 86.38 0.49 1.16 16 24 C 0.46 4.65 3.11 71.98 0.22 4.87 16 25 F -0.18 -2.30 17.18 44.97 0.77 -1.53 16 26 F -0.17 -1.87 17.32 44.97 0.78 -1.09 16 27 F -0.18 -2.36 17.18 44.97 0.77 -1.59 16 28 H 0.07 2.19 6.60 -2.38 -0.02 2.18 16 29 H 0.07 2.13 6.77 -2.39 -0.02 2.12 16 30 H 0.06 1.76 8.08 -2.39 -0.02 1.74 16 31 H 0.37 15.60 2.79 -92.70 -0.26 15.34 16 32 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 33 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 36 H 0.10 2.37 6.16 -2.39 -0.01 2.35 16 37 H 0.42 5.79 7.83 -92.71 -0.73 5.06 16 38 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.14 0.86 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -66.59 336.08 3.08 -63.51 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.08 Total: 24.71 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: 5.05 Total: 21.25 kcal Atomic # 7 Polarization: -118.36 SS G_CDS: -6.17 Total: -124.53 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.09 Total: -26.68 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 2.32 Total: -4.20 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.90 Total: 45.95 kcal Total: -66.59 3.08 -63.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179812639.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.761 kcal (2) G-P(sol) polarization free energy of solvation -66.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds