Wall clock time and date at job start Tue Mar 31 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86802 * 119.99848 * 2 1 4 4 H 1.48504 * 109.46636 * 269.99369 * 3 2 1 5 5 H 1.48493 * 109.47003 * 29.99628 * 3 2 1 6 6 H 1.48503 * 109.47038 * 149.99774 * 3 2 1 7 7 C 1.38949 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99998 * 0.02562 * 7 2 1 9 9 N 1.37101 * 120.00127 * 180.02562 * 7 2 1 10 10 C 1.34769 * 120.00035 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00180 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99907 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.47193 * 179.97438 * 12 10 9 14 14 C 1.47851 * 110.99774 * 49.15321 * 13 12 10 15 15 C 1.54910 * 104.79405 * 146.36402 * 14 13 12 16 16 H 1.09000 * 110.99430 * 81.02121 * 15 14 13 17 17 O 1.42895 * 110.99209 * 204.84215 * 15 14 13 18 18 C 1.55147 * 101.65339 * 322.93225 * 15 14 13 19 19 H 1.09001 * 110.84871 * 277.19808 * 18 15 14 20 20 N 1.46494 * 110.70662 * 154.03864 * 18 15 14 21 21 C 1.34777 * 120.00092 * 159.94652 * 20 18 15 22 22 O 1.21606 * 119.99953 * 359.97438 * 21 20 18 23 23 C 1.47430 * 120.00227 * 179.97438 * 21 20 18 24 24 C 1.41294 * 126.41270 * 0.02716 * 23 21 20 25 25 N 1.30440 * 108.02337 * 179.97438 * 24 23 21 26 26 N 1.39933 * 108.89863 * 359.97438 * 25 24 23 27 27 H 0.97000 * 125.75676 * 180.26683 * 26 25 24 28 28 C 1.34264 * 108.49025 * 0.02562 * 26 25 24 29 29 C 1.47442 * 111.00096 * 169.99783 * 13 12 10 30 30 H 0.96997 * 120.00407 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99396 * 0.02562 * 9 7 2 32 32 H 1.08994 * 109.46990 * 59.99663 * 12 10 9 33 33 H 1.09000 * 109.46523 * 299.99732 * 12 10 9 34 34 H 1.08997 * 110.37811 * 265.19027 * 14 13 12 35 35 H 1.08999 * 110.37423 * 27.42536 * 14 13 12 36 36 H 0.96708 * 113.99557 * 292.26292 * 17 15 14 37 37 H 0.96998 * 119.99860 * 339.94466 * 20 18 15 38 38 H 1.08003 * 125.98909 * 359.95800 * 24 23 21 39 39 H 1.07998 * 126.29115 * 180.02562 * 28 26 25 40 40 H 1.08995 * 109.88892 * 117.34172 * 29 13 12 41 41 H 1.08996 * 109.88769 * 356.14602 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4455 2.6526 0.6999 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3799 -1.2034 0.0011 10 6 4.0537 -2.3705 0.0011 11 8 3.4473 -3.4209 0.0011 12 6 5.5607 -2.3705 0.0022 13 7 6.0504 -3.7555 0.0026 14 6 5.3767 -4.5559 -1.0421 15 6 6.4519 -5.5610 -1.5252 16 1 6.5258 -6.4103 -0.8459 17 8 6.1826 -5.9969 -2.8591 18 6 7.7374 -4.6940 -1.4728 19 1 7.8330 -4.0871 -2.3731 20 7 8.9225 -5.5354 -1.2893 21 6 10.1419 -5.0621 -1.6142 22 8 10.2583 -3.9368 -2.0602 23 6 11.3346 -5.9087 -1.4291 24 6 11.3564 -7.2285 -0.9252 25 7 12.5954 -7.6361 -0.9145 26 7 13.4137 -6.6120 -1.4043 27 1 14.3774 -6.6557 -1.5049 28 6 12.6392 -5.5606 -1.7164 29 6 7.5048 -3.8018 -0.2353 30 1 -0.4850 0.8400 -0.0004 31 1 3.8648 -0.3633 0.0014 32 1 5.9233 -1.8570 0.8927 33 1 5.9247 -1.8563 -0.8873 34 1 4.5226 -5.0868 -0.6216 35 1 5.0572 -3.9152 -1.8640 36 1 5.3883 -6.5424 -2.9418 37 1 8.8296 -6.4332 -0.9339 38 1 10.4976 -7.7998 -0.6048 39 1 12.9750 -4.6164 -2.1189 40 1 8.0088 -4.2305 0.6308 41 1 7.8814 -2.7970 -0.4267 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191228488.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:36 Heat of formation + Delta-G solvation = -55.887690 kcal Electronic energy + Delta-G solvation = -26751.176247 eV Core-core repulsion = 22666.984838 eV Total energy + Delta-G solvation = -4084.191409 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.31949 -41.25398 -40.21925 -39.15004 -36.91662 -36.01854 -35.33600 -33.77521 -32.85933 -31.76357 -30.91218 -29.13416 -28.11092 -25.89568 -24.13820 -22.96427 -22.61108 -21.79225 -21.33096 -21.02017 -20.21828 -19.64123 -18.49401 -17.86087 -17.50111 -17.04117 -16.85230 -16.29203 -16.25625 -16.04207 -15.71005 -15.51248 -15.24922 -15.03883 -14.86404 -14.52753 -14.38439 -14.11889 -14.08295 -13.76288 -13.67118 -13.31665 -13.07139 -13.00390 -12.58795 -12.41157 -12.21867 -11.98315 -11.72752 -11.50683 -11.17421 -10.89619 -10.84597 -10.36322 -10.25815 -10.19599 -9.81155 -9.27613 -8.41520 -6.01890 0.56066 1.16591 1.30564 1.34769 1.43767 1.76764 1.92562 2.21114 2.22471 2.45065 2.57698 2.96045 3.14704 3.27967 3.54736 3.67197 3.83312 3.93489 3.98796 4.12531 4.14488 4.26952 4.31952 4.37793 4.41852 4.48626 4.64394 4.75281 4.87470 4.94948 5.13745 5.34075 5.46770 5.52041 5.78958 5.90344 5.99252 6.22894 6.46179 6.58120 6.63440 6.78009 6.87254 7.28845 7.38102 7.93213 8.75638 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.026971 B = 0.002369 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.916079 B =11817.691041 C =12428.546027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.961 3.039 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.232 1.232 7 C -0.325 4.325 8 H 0.060 0.940 9 N -0.591 5.591 10 C 0.450 3.550 11 O -0.602 6.602 12 C 0.044 3.956 13 N -0.512 5.512 14 C 0.034 3.966 15 C 0.098 3.902 16 H 0.105 0.895 17 O -0.570 6.570 18 C 0.142 3.858 19 H 0.078 0.922 20 N -0.700 5.700 21 C 0.597 3.403 22 O -0.589 6.589 23 C -0.319 4.319 24 C 0.091 3.909 25 N -0.323 5.323 26 N -0.451 5.451 27 H 0.460 0.540 28 C 0.146 3.854 29 C 0.039 3.961 30 H 0.279 0.721 31 H 0.388 0.612 32 H 0.122 0.878 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.029 0.971 36 H 0.400 0.600 37 H 0.416 0.584 38 H 0.216 0.784 39 H 0.212 0.788 40 H 0.101 0.899 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.811 -11.122 -2.472 30.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.213 4.213 3 Si 0.781 3.219 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.156 1.156 7 C -0.454 4.454 8 H 0.078 0.922 9 N -0.232 5.232 10 C 0.238 3.762 11 O -0.486 6.486 12 C -0.087 4.087 13 N -0.238 5.238 14 C -0.095 4.095 15 C 0.037 3.963 16 H 0.122 0.878 17 O -0.378 6.378 18 C 0.035 3.965 19 H 0.096 0.904 20 N -0.351 5.351 21 C 0.386 3.614 22 O -0.471 6.471 23 C -0.334 4.334 24 C -0.097 4.097 25 N -0.144 5.144 26 N -0.157 5.157 27 H 0.308 0.692 28 C -0.008 4.008 29 C -0.090 4.090 30 H 0.088 0.912 31 H 0.224 0.776 32 H 0.140 0.860 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.048 0.952 36 H 0.251 0.749 37 H 0.253 0.747 38 H 0.232 0.768 39 H 0.229 0.771 40 H 0.119 0.881 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 29.501 -11.809 -2.133 31.848 hybrid contribution -1.005 1.484 -0.795 1.961 sum 28.496 -10.325 -2.929 30.450 Atomic orbital electron populations 1.69791 1.08007 1.29203 1.50271 1.26072 0.96462 1.02596 0.96184 0.85417 0.79567 0.77072 0.79836 1.18394 1.19934 1.15556 1.18997 0.81260 0.94996 1.50150 0.92235 1.42040 1.05964 1.07527 1.67676 1.20711 0.90529 0.83545 0.81405 1.90513 1.71171 1.31997 1.54927 1.22197 0.90592 0.91670 1.04287 1.63414 1.03849 1.09648 1.46899 1.23540 0.97583 0.95930 0.92431 1.23175 0.92270 0.96250 0.84577 0.87769 1.86445 1.50777 1.73453 1.27139 1.21850 0.84009 0.92251 0.98369 0.90353 1.45444 1.04727 1.18734 1.66181 1.17538 0.82805 0.85273 0.75762 1.90769 1.86845 1.21468 1.47998 1.20226 0.93717 0.97955 1.21474 1.24521 0.96113 0.93305 0.95773 1.77150 1.02864 1.12388 1.21971 1.46284 1.11117 1.09704 1.48644 0.69243 1.23429 0.90124 0.93953 0.93323 1.23311 0.87634 1.00425 0.97643 0.91154 0.77615 0.85969 0.90742 0.89851 0.95232 0.74949 0.74669 0.76755 0.77107 0.88072 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.04 13.96 21.66 0.30 -55.74 16 2 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 3 Si 0.96 39.12 27.74 68.60 1.90 41.02 16 4 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 6 H -0.23 -8.02 6.52 99.48 0.65 -7.38 16 7 C -0.32 -18.90 10.16 84.04 0.85 -18.04 16 8 H 0.06 4.09 7.39 -2.91 -0.02 4.07 16 9 N -0.59 -27.90 5.09 -306.99 -1.56 -29.46 16 10 C 0.45 20.17 7.31 87.66 0.64 20.81 16 11 O -0.60 -31.81 13.13 -3.06 -0.04 -31.85 16 12 C 0.04 1.40 5.31 85.56 0.45 1.85 16 13 N -0.51 -15.34 5.21 -890.09 -4.64 -19.97 16 14 C 0.03 1.06 4.68 86.77 0.41 1.46 16 15 C 0.10 2.17 4.03 31.98 0.13 2.30 16 16 H 0.10 1.78 8.00 -2.39 -0.02 1.76 16 17 O -0.57 -12.78 13.47 -148.98 -2.01 -14.78 16 18 C 0.14 3.24 2.97 46.18 0.14 3.38 16 19 H 0.08 2.24 7.69 -2.39 -0.02 2.22 16 20 N -0.70 -12.27 5.12 -440.20 -2.25 -14.52 16 21 C 0.60 12.49 7.81 86.66 0.68 13.16 16 22 O -0.59 -16.95 16.62 -4.05 -0.07 -17.02 16 23 C -0.32 -4.90 6.13 -20.15 -0.12 -5.03 16 24 C 0.09 1.12 11.50 85.65 0.99 2.11 16 25 N -0.32 -4.55 12.63 -56.27 -0.71 -5.26 16 26 N -0.45 -4.06 7.29 -56.32 -0.41 -4.47 16 27 H 0.46 0.91 8.96 -213.43 -1.91 -1.01 16 28 C 0.15 1.62 11.82 84.27 1.00 2.62 16 29 C 0.04 0.90 6.62 86.65 0.57 1.48 16 30 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 31 H 0.39 15.42 5.76 -92.71 -0.53 14.88 16 32 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.07 2.11 7.96 -2.39 -0.02 2.09 16 34 H 0.08 3.07 6.71 -2.39 -0.02 3.05 16 35 H 0.03 1.07 7.53 -2.39 -0.02 1.05 16 36 H 0.40 6.01 9.12 -74.05 -0.68 5.34 16 37 H 0.42 4.61 7.47 -92.71 -0.69 3.92 16 38 H 0.22 1.19 7.50 -2.91 -0.02 1.17 16 39 H 0.21 1.38 8.06 -2.91 -0.02 1.35 16 40 H 0.10 2.08 8.03 -2.39 -0.02 2.06 16 41 H 0.07 1.62 7.49 -2.39 -0.02 1.60 16 Total: -1.00 -86.00 348.96 -6.02 -92.03 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: -2.74 Total: 34.25 kcal Atomic # 6 Polarization: 19.59 SS G_CDS: 6.20 Total: 25.78 kcal Atomic # 7 Polarization: -120.16 SS G_CDS: -9.27 Total: -129.43 kcal Atomic # 8 Polarization: -61.54 SS G_CDS: -2.11 Total: -63.65 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 1.90 Total: 41.02 kcal Total: -86.00 -6.02 -92.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191228488.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.138 kcal (2) G-P(sol) polarization free energy of solvation -86.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds