Wall clock time and date at job start Tue Mar 31 2020 06:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86793 * 120.00343 * 2 1 4 4 H 1.48502 * 109.47264 * 270.00229 * 3 2 1 5 5 H 1.48508 * 109.47163 * 29.99692 * 3 2 1 6 6 H 1.48502 * 109.47430 * 149.99858 * 3 2 1 7 7 C 1.38955 * 119.99505 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99559 * 180.02562 * 7 2 1 9 9 N 1.37089 * 120.00252 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00069 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00097 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00079 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47051 * 180.02562 * 12 10 9 14 14 C 1.46852 * 110.99934 * 170.00268 * 13 12 10 15 15 C 1.53038 * 109.52121 * 185.84196 * 14 13 12 16 16 C 1.53117 * 109.27525 * 300.81671 * 15 14 13 17 17 N 1.46503 * 109.52102 * 177.56495 * 16 15 14 18 18 C 1.34775 * 120.00069 * 155.00404 * 17 16 15 19 19 O 1.21496 * 120.00364 * 359.97438 * 18 17 16 20 20 C 1.48279 * 119.99782 * 180.02562 * 18 17 16 21 21 C 1.47490 * 128.71368 * 180.02562 * 20 18 17 22 22 N 1.30644 * 102.72062 * 179.97438 * 21 20 18 23 23 O 1.20841 * 109.61821 * 359.97438 * 22 21 20 24 24 N 1.20903 * 115.90577 * 359.97438 * 23 22 21 25 25 C 1.53114 * 109.16081 * 57.66036 * 16 15 14 26 26 C 1.46843 * 110.99956 * 294.21286 * 13 12 10 27 27 H 0.97004 * 119.99929 * 0.02562 * 1 2 3 28 28 H 0.96998 * 120.00446 * 0.02562 * 9 7 2 29 29 H 1.09000 * 109.46818 * 60.00427 * 12 10 9 30 30 H 1.09000 * 109.47466 * 300.00198 * 12 10 9 31 31 H 1.08999 * 109.46359 * 65.82216 * 14 13 12 32 32 H 1.09001 * 109.45396 * 305.85084 * 14 13 12 33 33 H 1.09000 * 109.49647 * 180.88139 * 15 14 13 34 34 H 1.08997 * 109.50815 * 60.76089 * 15 14 13 35 35 H 1.09002 * 109.52742 * 297.68438 * 16 15 14 36 36 H 0.97003 * 120.00100 * 334.99534 * 17 16 15 37 37 H 1.08009 * 128.63953 * 0.23203 * 21 20 18 38 38 H 1.08999 * 109.50307 * 62.28513 * 25 16 15 39 39 H 1.09004 * 109.50552 * 182.39970 * 25 16 15 40 40 H 1.09006 * 109.46143 * 294.17411 * 26 13 12 41 41 H 1.09000 * 109.46405 * 54.15411 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2101 -3.5580 0.0010 12 6 1.2435 -4.8629 0.0011 13 7 2.1981 -5.9795 0.0016 14 6 1.5138 -7.2568 0.2402 15 6 2.5503 -8.3742 0.3789 16 6 3.3841 -8.4521 -0.9030 17 7 4.4161 -9.4812 -0.7539 18 6 4.9273 -10.0859 -1.8445 19 8 4.5321 -9.7779 -2.9513 20 6 5.9714 -11.1279 -1.6935 21 6 6.6576 -11.9051 -2.7426 22 7 7.4666 -12.6657 -2.0544 23 8 7.3345 -12.4363 -0.8753 24 7 6.5197 -11.5899 -0.5899 25 6 4.0473 -7.0951 -1.1545 26 6 2.9674 -6.0147 -1.2487 27 1 -0.4850 0.8401 -0.0004 28 1 0.3533 -2.3907 -0.0002 29 1 0.6166 -4.9208 -0.8887 30 1 0.6172 -4.9205 0.8913 31 1 0.8526 -7.4767 -0.5980 32 1 0.9280 -7.1891 1.1569 33 1 2.0414 -9.3244 0.5404 34 1 3.2033 -8.1619 1.2254 35 1 2.7374 -8.7040 -1.7435 36 1 4.7315 -9.7274 0.1298 37 1 6.5270 -11.8546 -3.8136 38 1 4.7238 -6.8627 -0.3320 39 1 4.6080 -7.1316 -2.0885 40 1 2.2994 -6.2405 -2.0799 41 1 3.4374 -5.0451 -1.4134 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229663337.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:56 Heat of formation + Delta-G solvation = 53.617239 kcal Electronic energy + Delta-G solvation = -26528.726094 eV Core-core repulsion = 22449.283175 eV Total energy + Delta-G solvation = -4079.442919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -47.37181 -40.42247 -39.02042 -37.62615 -35.42373 -35.02983 -34.92352 -33.87168 -31.82960 -31.18761 -30.79456 -27.63003 -26.27930 -24.68275 -24.32551 -23.22097 -22.74367 -21.07184 -20.16806 -19.48729 -19.20454 -18.89008 -17.93561 -17.86757 -16.67553 -16.02126 -15.68208 -15.47020 -15.17665 -14.93035 -14.66088 -14.45553 -14.01752 -13.80715 -13.53283 -13.39040 -13.31510 -13.04696 -12.38868 -12.36447 -11.93855 -11.83536 -11.77373 -11.51355 -11.30622 -11.24307 -11.19297 -11.08949 -10.79597 -10.73542 -10.51377 -10.39501 -10.22256 -9.52808 -9.37938 -8.45849 -7.98786 -7.86745 -6.42372 -3.83021 0.28894 0.87170 2.20140 2.52425 2.95968 3.04014 3.17252 3.26092 3.31866 3.49699 3.88860 3.95106 4.22994 4.29169 4.35312 4.56058 4.78504 4.88448 4.94905 5.02158 5.23803 5.25807 5.34439 5.42050 5.55101 5.62673 5.72775 5.77201 5.88857 5.94574 6.00988 6.04679 6.26687 6.36617 6.47581 6.92373 7.25175 7.38169 7.54699 7.55577 7.93823 8.05836 8.61159 9.17608 9.53930 10.05628 10.75333 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.029204 B = 0.002078 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.542185 B =13474.438602 C =13935.239954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.443 3.557 11 O -0.577 6.577 12 C 0.046 3.954 13 N -0.517 5.517 14 C 0.058 3.942 15 C -0.121 4.121 16 C 0.142 3.858 17 N -0.702 5.702 18 C 0.605 3.395 19 O -0.511 6.511 20 C -0.040 4.040 21 C 0.038 3.962 22 N -0.353 5.353 23 O 0.342 5.658 24 N -0.321 5.321 25 C -0.121 4.121 26 C 0.056 3.944 27 H 0.271 0.729 28 H 0.392 0.608 29 H 0.048 0.952 30 H 0.089 0.911 31 H 0.033 0.967 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.408 0.592 37 H 0.228 0.772 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.025 0.975 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.449 -23.274 -1.871 23.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.229 3.771 11 O -0.462 6.462 12 C -0.085 4.085 13 N -0.241 5.241 14 C -0.070 4.070 15 C -0.159 4.159 16 C 0.039 3.961 17 N -0.353 5.353 18 C 0.387 3.613 19 O -0.384 6.384 20 C -0.206 4.206 21 C -0.148 4.148 22 N -0.076 5.076 23 O 0.116 5.884 24 N -0.041 5.041 25 C -0.160 4.160 26 C -0.072 4.072 27 H 0.081 0.919 28 H 0.225 0.775 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.243 0.757 37 H 0.245 0.755 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.043 0.957 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.756 -23.327 -1.418 24.327 hybrid contribution -1.156 1.031 -0.941 1.812 sum 5.600 -22.296 -2.358 23.109 Atomic orbital electron populations 1.69613 1.05925 1.28139 1.50638 1.25264 0.95641 0.99728 0.97372 0.85861 0.79245 0.80835 0.78365 1.20441 1.20945 1.19418 1.19688 0.93344 0.82201 1.47527 0.87920 1.41869 1.09197 1.04603 1.64407 1.19741 0.88419 0.84551 0.84437 1.90485 1.13683 1.86872 1.55125 1.21833 0.93901 0.91150 1.01594 1.61536 1.25119 1.01360 1.36117 1.22027 0.94813 0.89079 1.01115 1.21849 0.98227 0.98634 0.97202 1.21320 0.88357 0.86947 0.99460 1.45983 1.40894 1.39557 1.08822 1.16468 0.79945 0.79568 0.85355 1.90868 1.59398 1.63320 1.24805 1.26323 1.02882 1.02913 0.88488 1.27779 0.91835 0.91602 1.03556 1.75095 1.20320 1.20799 0.91429 1.85099 1.42455 1.40370 1.20475 1.75390 1.02279 1.02351 1.24070 1.21942 0.98801 0.92556 1.02730 1.22215 0.94921 1.01284 0.88827 0.91890 0.77496 0.93395 0.89265 0.94849 0.90083 0.90946 0.90071 0.89149 0.75717 0.75544 0.90436 0.91234 0.95678 0.87347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.94 29.55 -169.99 -5.02 15.91 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.30 -8.20 9.68 -14.94 -0.14 -8.35 16 8 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 9 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 10 C 0.44 10.18 7.46 -10.99 -0.08 10.10 16 11 O -0.58 -15.12 13.90 5.54 0.08 -15.05 16 12 C 0.05 0.80 5.45 -4.97 -0.03 0.77 16 13 N -0.52 -8.07 4.40 -236.10 -1.04 -9.11 16 14 C 0.06 0.67 5.46 -3.83 -0.02 0.65 16 15 C -0.12 -1.15 5.57 -26.65 -0.15 -1.29 16 16 C 0.14 1.52 2.52 -67.81 -0.17 1.35 16 17 N -0.70 -6.54 5.08 -54.49 -0.28 -6.82 16 18 C 0.60 6.32 7.82 -12.13 -0.09 6.22 16 19 O -0.51 -6.75 16.71 5.37 0.09 -6.66 16 20 C -0.04 -0.35 7.56 -80.07 -0.61 -0.96 16 21 C 0.04 0.27 12.63 -14.29 -0.18 0.09 16 22 N -0.35 -2.83 12.22 30.72 0.38 -2.45 16 23 O 0.34 2.78 11.65 27.26 0.32 3.10 16 24 N -0.32 -2.73 12.13 33.50 0.41 -2.33 16 25 C -0.12 -1.61 5.67 -26.65 -0.15 -1.77 16 26 C 0.06 0.88 5.11 -3.83 -0.02 0.86 16 27 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.39 9.34 7.90 -40.82 -0.32 9.01 16 29 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 30 H 0.09 1.37 7.99 -51.93 -0.41 0.95 16 31 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.84 8.01 -51.93 -0.42 0.43 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 1.05 7.58 -51.93 -0.39 0.65 16 36 H 0.41 3.10 8.46 -40.82 -0.35 2.76 16 37 H 0.23 0.94 8.06 -52.48 -0.42 0.52 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.11 2.12 5.78 -51.93 -0.30 1.82 16 LS Contribution 351.93 15.07 5.30 5.30 Total: -1.00 -31.82 351.93 -5.93 -37.75 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -5.08 Total: 9.92 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -1.74 Total: 8.15 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 0.13 Total: -58.43 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: 0.48 Total: -18.61 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.82 -5.93 -37.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229663337.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.369 kcal (2) G-P(sol) polarization free energy of solvation -31.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds