Wall clock time and date at job start Tue Mar 31 2020 04:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.41379 * 126.80522 * 2 1 4 4 C 1.35449 * 103.98950 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.77908 * 180.26147 * 4 3 2 6 6 N 1.46506 * 109.47140 * 89.70916 * 5 4 3 7 7 C 1.34766 * 120.00161 * 180.02562 * 6 5 4 8 8 O 1.21352 * 120.00214 * 0.02562 * 7 6 5 9 9 C 1.49452 * 120.00166 * 180.02562 * 7 6 5 10 10 O 1.21347 * 119.99912 * 0.02562 * 9 7 6 11 11 N 1.34774 * 120.00105 * 179.97438 * 9 7 6 12 12 C 1.47021 * 125.64967 * 359.69730 * 11 9 7 13 13 C 1.54337 * 107.26582 * 178.84593 * 12 11 9 14 14 C 1.55157 * 103.02270 * 338.14024 * 13 12 11 15 15 O 1.42906 * 111.00163 * 277.23531 * 14 13 12 16 16 C 1.50699 * 111.03858 * 153.39599 * 14 13 12 17 17 H 1.07995 * 119.99855 * 6.33279 * 16 14 13 18 18 C 1.37871 * 119.99923 * 186.32943 * 16 14 13 19 19 N 1.31521 * 120.00217 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 120.00189 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46821 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46956 * 120.00014 * 20 18 16 23 23 H 1.48494 * 109.47490 * 240.00220 * 20 18 16 24 24 C 1.47430 * 125.64993 * 179.97438 * 11 9 7 25 25 O 1.34044 * 106.44438 * 359.97438 * 4 3 2 26 26 N 1.20917 * 111.56675 * 0.02562 * 25 4 3 27 27 H 1.08997 * 109.47336 * 269.99934 * 1 2 3 28 28 H 1.09003 * 109.47135 * 30.00078 * 1 2 3 29 29 H 1.09004 * 109.47033 * 149.99750 * 1 2 3 30 30 H 1.07997 * 128.00412 * 0.05803 * 3 2 1 31 31 H 1.08996 * 109.47062 * 209.71141 * 5 4 3 32 32 H 1.09002 * 109.46910 * 329.71700 * 5 4 3 33 33 H 0.97002 * 119.99659 * 0.02562 * 6 5 4 34 34 H 1.08998 * 109.88151 * 298.38966 * 12 11 9 35 35 H 1.09006 * 109.88328 * 59.55640 * 12 11 9 36 36 H 1.08996 * 110.84879 * 219.67336 * 13 12 11 37 37 H 1.08998 * 110.51425 * 96.44919 * 13 12 11 38 38 H 0.96702 * 113.99543 * 173.65185 * 15 14 13 39 39 H 0.96995 * 120.00005 * 180.02562 * 19 18 16 40 40 H 1.09000 * 110.36668 * 322.93543 * 24 11 9 41 41 H 1.08998 * 110.36611 * 85.14369 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6024 0.6068 -0.0006 5 6 4.9022 1.3695 0.0047 6 7 5.3179 1.6165 1.3876 7 6 6.4594 2.2875 1.6385 8 8 7.1427 2.6875 0.7190 9 6 6.8837 2.5390 3.0493 10 8 6.2006 2.1386 3.9689 11 7 8.0255 3.2096 3.3002 12 6 8.9474 3.7415 2.2859 13 6 10.0932 4.4527 3.0364 14 6 9.4643 4.7648 4.4200 15 8 8.6875 5.9633 4.3710 16 6 10.5237 4.8545 5.4881 17 1 11.5682 4.8086 5.2177 18 6 10.1593 4.9951 6.8103 19 7 8.8872 5.0505 7.1396 20 14 11.4724 5.1055 8.1343 21 1 12.8158 5.0183 7.5075 22 1 11.3444 6.3995 8.8516 23 1 11.3009 3.9873 9.0962 24 6 8.5600 3.5262 4.6372 25 8 3.4537 -0.7254 -0.0003 26 7 2.2868 -1.0423 -0.0002 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 2.0710 2.1742 0.0009 31 1 5.6680 0.7858 -0.5062 32 1 4.7671 2.3210 -0.5095 33 1 4.7714 1.2970 2.1227 34 1 9.3465 2.9256 1.6834 35 1 8.4253 4.4550 1.6483 36 1 10.3788 5.3727 2.5263 37 1 10.9502 3.7878 3.1435 38 1 8.1967 6.1474 5.1836 39 1 8.6309 5.1498 8.0698 40 1 7.7477 3.7652 5.3236 41 1 9.1451 2.6899 5.0196 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326116333.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:41 Heat of formation + Delta-G solvation = -48.658208 kcal Electronic energy + Delta-G solvation = -26960.644930 eV Core-core repulsion = 22844.474264 eV Total energy + Delta-G solvation = -4116.170666 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.31104 -40.43606 -38.59246 -37.23598 -35.75319 -35.12000 -34.24137 -32.27730 -32.22231 -30.26755 -29.06941 -28.05858 -27.55080 -25.64387 -23.69968 -23.38894 -21.82768 -20.75280 -19.87271 -19.56605 -18.00927 -17.86666 -17.23254 -17.03958 -16.60979 -15.94802 -15.54023 -15.22718 -14.93460 -14.84282 -14.43393 -14.14137 -13.86437 -13.73915 -13.45287 -13.29135 -13.09150 -12.94281 -12.78545 -12.60504 -12.33945 -11.69951 -11.56544 -11.51955 -11.21275 -11.09028 -10.82585 -10.60765 -10.48248 -10.39536 -10.23401 -10.00298 -9.47715 -9.41093 -9.21011 -8.73714 -8.44031 -7.95174 -6.32491 -4.41890 0.91279 1.68538 1.80320 2.47572 2.78061 3.17781 3.26975 3.30414 3.50867 3.79802 3.83258 3.95563 4.23790 4.55749 4.60825 4.72265 4.87907 4.95307 5.08200 5.12253 5.16272 5.37229 5.39436 5.45472 5.70935 5.76264 5.79267 5.94421 6.02348 6.27081 6.48345 6.70201 6.74078 6.81123 7.03287 7.16064 7.27994 7.69757 7.72843 7.87374 7.97068 7.97970 8.37026 8.62824 9.25203 9.33771 10.74752 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.027687 B = 0.002425 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.072808 B =11544.170112 C =12015.500666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.012 3.988 3 C -0.204 4.204 4 C -0.050 4.050 5 C 0.204 3.796 6 N -0.708 5.708 7 C 0.516 3.484 8 O -0.512 6.512 9 C 0.509 3.491 10 O -0.536 6.536 11 N -0.573 5.573 12 C 0.110 3.890 13 C -0.122 4.122 14 C 0.248 3.752 15 O -0.581 6.581 16 C -0.536 4.536 17 H 0.069 0.931 18 C 0.070 3.930 19 N -0.894 5.894 20 Si 0.905 3.095 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.091 3.909 25 O 0.109 5.891 26 N -0.358 5.358 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.177 0.823 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.416 0.584 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.381 0.619 39 H 0.270 0.730 40 H 0.091 0.909 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.919 -6.695 -13.750 19.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.146 4.146 3 C -0.226 4.226 4 C -0.114 4.114 5 C 0.080 3.920 6 N -0.365 5.365 7 C 0.297 3.703 8 O -0.386 6.386 9 C 0.291 3.709 10 O -0.415 6.415 11 N -0.305 5.305 12 C -0.012 4.012 13 C -0.159 4.159 14 C 0.207 3.793 15 O -0.390 6.390 16 C -0.574 4.574 17 H 0.087 0.913 18 C -0.133 4.133 19 N -0.532 5.532 20 Si 0.732 3.268 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.208 1.208 24 C -0.029 4.029 25 O 0.041 5.959 26 N -0.061 5.061 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.194 0.806 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.252 0.748 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.231 0.769 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.922 -7.925 -14.407 20.311 hybrid contribution -0.054 0.625 1.676 1.790 sum -11.976 -7.300 -12.731 18.942 Atomic orbital electron populations 1.20190 0.85652 1.03891 1.03657 1.23678 0.99288 0.88670 1.02975 1.22583 0.90965 1.01539 1.07504 1.24323 0.97905 0.84113 1.05042 1.19638 0.89190 0.98740 0.84440 1.45735 1.24719 1.57659 1.08377 1.20456 0.80953 0.78329 0.90547 1.90749 1.52658 1.49009 1.46177 1.19422 0.82112 0.81052 0.88364 1.90742 1.53308 1.51796 1.45649 1.48674 1.19879 1.50519 1.11388 1.22174 0.90887 0.97764 0.90421 1.22714 0.96413 0.99885 0.96935 1.19646 0.87599 0.81038 0.90968 1.86133 1.65838 1.44094 1.42890 1.21496 0.93245 1.51670 0.90977 0.91295 1.25095 0.95869 0.93373 0.98972 1.69716 1.15220 1.49205 1.19087 0.86331 0.81576 0.77807 0.81099 1.19540 1.20746 1.20779 1.23516 0.98922 0.99655 0.80815 1.84866 1.21606 1.22480 1.66974 1.73886 0.89283 1.24134 1.18828 0.89931 0.89836 0.90471 0.80596 0.88435 0.87416 0.74766 0.91636 0.91096 0.90461 0.90325 0.76933 0.92010 0.89041 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.47 36.00 0.38 -0.07 16 2 C 0.01 0.11 7.33 -82.10 -0.60 -0.49 16 3 C -0.20 -1.66 11.06 -39.38 -0.44 -2.10 16 4 C -0.05 -0.45 6.86 -35.30 -0.24 -0.69 16 5 C 0.20 1.81 6.24 -5.19 -0.03 1.78 16 6 N -0.71 -8.44 5.54 -61.91 -0.34 -8.79 16 7 C 0.52 8.04 7.86 -11.59 -0.09 7.94 16 8 O -0.51 -8.45 14.12 5.50 0.08 -8.38 16 9 C 0.51 9.79 7.91 -11.59 -0.09 9.70 16 10 O -0.54 -11.39 16.73 5.50 0.09 -11.30 16 11 N -0.57 -11.71 3.33 -171.03 -0.57 -12.28 16 12 C 0.11 2.04 5.49 -3.06 -0.02 2.02 16 13 C -0.12 -2.40 6.13 -24.89 -0.15 -2.56 16 14 C 0.25 5.85 0.87 -89.64 -0.08 5.78 16 15 O -0.58 -14.44 13.16 -35.23 -0.46 -14.90 16 16 C -0.54 -13.57 8.27 -34.44 -0.28 -13.85 16 17 H 0.07 1.72 7.79 -52.49 -0.41 1.31 16 18 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 19 N -0.89 -23.16 10.69 55.43 0.59 -22.57 16 20 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 24 C 0.09 2.12 5.38 -2.54 -0.01 2.11 16 25 O 0.11 1.21 11.20 17.17 0.19 1.40 16 26 N -0.36 -4.12 12.07 33.42 0.40 -3.72 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.42 4.88 7.94 -40.82 -0.32 4.56 16 34 H 0.07 1.11 7.71 -51.93 -0.40 0.71 16 35 H 0.07 1.31 7.57 -51.93 -0.39 0.92 16 36 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 37 H 0.08 1.45 8.03 -51.93 -0.42 1.04 16 38 H 0.38 9.65 7.56 45.56 0.34 9.99 16 39 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 40 H 0.09 2.35 7.33 -51.93 -0.38 1.97 16 41 H 0.07 1.63 8.03 -51.93 -0.42 1.21 16 LS Contribution 354.02 15.07 5.34 5.34 Total: -1.00 -29.79 354.02 -5.95 -35.74 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -4.49 Total: 13.29 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: -1.76 Total: 11.25 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.08 Total: -47.36 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.10 Total: -33.18 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.79 -5.95 -35.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326116333.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.919 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds