Wall clock time and date at job start Tue Mar 31 2020 06:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34729 * 116.99852 * 2 1 4 4 O 1.21496 * 120.00353 * 359.97438 * 3 2 1 5 5 C 1.47585 * 119.99843 * 179.97438 * 3 2 1 6 6 C 1.41546 * 126.52382 * 179.97438 * 5 3 2 7 7 C 1.35344 * 105.50365 * 179.97438 * 6 5 3 8 8 N 1.35054 * 107.24038 * 0.02562 * 7 6 5 9 9 C 1.46494 * 124.87835 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.46933 * 124.99924 * 9 8 7 11 11 O 1.21281 * 120.00160 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99667 * 180.02562 * 10 9 8 13 13 C 1.47425 * 125.65136 * 359.95409 * 12 10 9 14 14 C 1.54915 * 104.83334 * 204.16738 * 13 12 10 15 15 C 1.55165 * 101.57980 * 322.99105 * 14 13 12 16 16 O 1.42893 * 110.71912 * 277.13741 * 15 14 13 17 17 C 1.50700 * 110.71840 * 153.86731 * 15 14 13 18 18 H 1.08005 * 119.99597 * 246.47621 * 17 15 14 19 19 C 1.37868 * 120.00222 * 66.47683 * 17 15 14 20 20 N 1.31519 * 120.00187 * 359.97438 * 19 17 15 21 21 Si 1.86802 * 120.00056 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47056 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47479 * 119.99918 * 21 19 17 24 24 H 1.48502 * 109.46831 * 239.99660 * 21 19 17 25 25 C 1.47022 * 125.64528 * 180.02562 * 12 10 9 26 26 N 1.28469 * 110.23714 * 0.26112 * 8 7 6 27 27 H 1.08994 * 109.47207 * 60.00041 * 1 2 3 28 28 H 1.08997 * 109.46962 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46859 * 300.00343 * 1 2 3 30 30 H 1.07996 * 127.25092 * 0.02562 * 6 5 3 31 31 H 1.07997 * 126.38461 * 180.02562 * 7 6 5 32 32 H 1.08997 * 109.47359 * 5.00308 * 9 8 7 33 33 H 1.09002 * 109.47401 * 244.99671 * 9 8 7 34 34 H 1.08997 * 110.36855 * 323.00479 * 13 12 10 35 35 H 1.08999 * 110.36490 * 85.21794 * 13 12 10 36 36 H 1.08995 * 111.00392 * 204.91661 * 14 13 12 37 37 H 1.09001 * 111.00387 * 81.05917 * 14 13 12 38 38 H 0.96699 * 114.00392 * 293.52799 * 16 15 14 39 39 H 0.96995 * 120.00067 * 179.97438 * 20 19 17 40 40 H 1.08997 * 109.88723 * 59.48678 * 25 12 10 41 41 H 1.08998 * 109.88661 * 298.31659 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4020 2.2194 -0.0005 5 6 3.5375 1.2777 0.0006 6 6 4.3192 2.4577 0.0001 7 6 5.6063 2.0390 0.0015 8 7 5.5879 0.6886 0.0022 9 6 6.7781 -0.1654 0.0042 10 6 6.7096 -1.1198 1.1685 11 8 5.7602 -1.0893 1.9226 12 7 7.7039 -2.0066 1.3723 13 6 8.9104 -2.1516 0.5376 14 6 9.3811 -3.6090 0.7707 15 6 9.0639 -3.8016 2.2773 16 8 10.1134 -3.2681 3.0871 17 6 8.8333 -5.2573 2.5917 18 1 7.8544 -5.5949 2.8988 19 6 9.8718 -6.1580 2.4873 20 7 11.0637 -5.7470 2.1129 21 14 9.5857 -7.9626 2.8764 22 1 8.1685 -8.1653 3.2708 23 1 9.8878 -8.7819 1.6754 24 1 10.4737 -8.3749 3.9930 25 6 7.7641 -2.9906 2.4631 26 7 4.3766 0.2607 -0.0043 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.9636 3.4774 -0.0003 31 1 6.4844 2.6676 0.0021 32 1 7.6700 0.4546 0.0948 33 1 6.8215 -0.7306 -0.9268 34 1 8.6659 -1.9953 -0.5130 35 1 9.6790 -1.4474 0.8563 36 1 10.4495 -3.7096 0.5804 37 1 8.8093 -4.3067 0.1588 38 1 10.9521 -3.7425 3.0067 39 1 11.7944 -6.3807 2.0398 40 1 6.9017 -3.6551 2.4110 41 1 7.7818 -2.4776 3.4246 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001452254915.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:45 Heat of formation + Delta-G solvation = -71.589442 kcal Electronic energy + Delta-G solvation = -27037.365601 eV Core-core repulsion = 22920.200561 eV Total energy + Delta-G solvation = -4117.165039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.83915 -40.19451 -39.60007 -37.44035 -36.48198 -34.51321 -33.65814 -32.24976 -30.94100 -30.22739 -29.02808 -28.33156 -27.34432 -25.18954 -23.74388 -22.50969 -21.68487 -20.57613 -19.89600 -19.08979 -17.98520 -17.55530 -17.25527 -17.05283 -16.49100 -16.41793 -15.86156 -15.33804 -15.04697 -14.61563 -14.30744 -14.13890 -13.90750 -13.64151 -13.36283 -13.25192 -13.09348 -12.75991 -12.26475 -12.19365 -12.11458 -11.70711 -11.56258 -11.44453 -10.99626 -10.93964 -10.88825 -10.83250 -10.74702 -10.53786 -10.24171 -9.93278 -9.52863 -9.33620 -9.18058 -8.76403 -8.34015 -8.23510 -6.39376 -4.46497 1.28806 1.88078 2.08603 2.68292 2.70941 3.10815 3.13430 3.22827 3.25524 3.30697 4.17009 4.19928 4.48849 4.59575 4.67854 4.78801 4.88929 4.97997 5.05782 5.11674 5.32618 5.37343 5.45135 5.54850 5.59812 5.72170 5.82985 6.01140 6.12090 6.25258 6.31324 6.48169 6.54861 6.73551 6.80515 7.16854 7.21201 7.53295 7.64363 7.82160 7.88472 7.89390 8.30960 8.56436 9.21964 9.34037 10.68567 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020844 B = 0.002665 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.962184 B =10503.044276 C =11469.182855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.341 6.341 3 C 0.562 3.438 4 O -0.507 6.507 5 C -0.019 4.019 6 C -0.173 4.173 7 C -0.017 4.017 8 N -0.263 5.263 9 C 0.103 3.897 10 C 0.509 3.491 11 O -0.523 6.523 12 N -0.604 5.604 13 C 0.090 3.910 14 C -0.137 4.137 15 C 0.248 3.752 16 O -0.587 6.587 17 C -0.535 4.535 18 H 0.066 0.934 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.904 3.096 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.281 1.281 25 C 0.124 3.876 26 N -0.198 5.198 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.166 0.834 31 H 0.187 0.813 32 H 0.134 0.866 33 H 0.125 0.875 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.387 0.613 39 H 0.269 0.731 40 H 0.075 0.925 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.003 12.327 -8.442 16.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.256 6.256 3 C 0.405 3.595 4 O -0.393 6.393 5 C -0.177 4.177 6 C -0.201 4.201 7 C -0.157 4.157 8 N -0.052 5.052 9 C -0.021 4.021 10 C 0.294 3.706 11 O -0.399 6.399 12 N -0.338 5.338 13 C -0.033 4.033 14 C -0.176 4.176 15 C 0.208 3.792 16 O -0.397 6.397 17 C -0.573 4.573 18 H 0.084 0.916 19 C -0.130 4.130 20 N -0.538 5.538 21 Si 0.732 3.268 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.207 1.207 25 C 0.003 3.997 26 N -0.035 5.035 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.183 0.817 31 H 0.204 0.796 32 H 0.152 0.848 33 H 0.143 0.857 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.239 0.761 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.970 11.810 -7.906 16.294 hybrid contribution 0.400 -0.511 -0.037 0.649 sum -7.570 11.299 -7.943 15.750 Atomic orbital electron populations 1.23313 0.76046 1.03918 1.02481 1.86690 1.23291 1.31948 1.83695 1.19576 0.86333 0.81549 0.72064 1.90836 1.65601 1.36120 1.46778 1.20706 0.90926 0.91375 1.14676 1.21670 0.90861 0.99190 1.08337 1.22913 1.00163 0.84184 1.08475 1.45092 1.04802 1.05308 1.50024 1.21906 0.84749 0.94214 1.01193 1.19744 0.82767 0.81750 0.86377 1.90796 1.32147 1.70142 1.46798 1.48588 1.20277 1.34612 1.30307 1.22610 0.86399 1.01040 0.93219 1.23337 1.02276 0.91116 1.00870 1.19434 0.83103 0.90627 0.86054 1.86092 1.24566 1.60259 1.68821 1.21573 0.97167 0.91704 1.46859 0.91568 1.24988 0.94880 0.99695 0.93460 1.69569 1.01198 1.35713 1.47335 0.86332 0.78686 0.83706 0.78125 1.19520 1.20769 1.20705 1.22142 0.99565 0.89445 0.88545 1.73812 0.89473 1.26197 1.14054 0.91838 0.87869 0.91772 0.81678 0.79575 0.84822 0.85741 0.92015 0.91414 0.89414 0.91226 0.76061 0.92072 0.90721 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.57 101.05 1.07 1.42 16 2 O -0.34 -4.92 10.58 -40.57 -0.43 -5.35 16 3 C 0.56 8.57 7.97 34.54 0.28 8.84 16 4 O -0.51 -8.04 16.72 -19.26 -0.32 -8.36 16 5 C -0.02 -0.29 7.17 -82.79 -0.59 -0.89 16 6 C -0.17 -2.08 10.81 -39.35 -0.43 -2.50 16 7 C -0.02 -0.17 11.40 -17.17 -0.20 -0.37 16 8 N -0.26 -3.48 3.17 -62.51 -0.20 -3.67 16 9 C 0.10 1.16 5.89 -5.19 -0.03 1.13 16 10 C 0.51 8.57 7.85 -10.98 -0.09 8.48 16 11 O -0.52 -11.13 15.98 5.56 0.09 -11.04 16 12 N -0.60 -10.61 3.33 -170.52 -0.57 -11.18 16 13 C 0.09 1.36 6.68 -2.53 -0.02 1.34 16 14 C -0.14 -2.67 5.67 -24.57 -0.14 -2.81 16 15 C 0.25 5.61 0.86 -89.93 -0.08 5.53 16 16 O -0.59 -13.95 13.09 -35.23 -0.46 -14.41 16 17 C -0.53 -13.38 8.21 -34.44 -0.28 -13.66 16 18 H 0.07 1.68 7.53 -52.48 -0.40 1.29 16 19 C 0.07 1.77 5.28 -17.82 -0.09 1.68 16 20 N -0.90 -21.99 10.70 55.43 0.59 -21.40 16 21 Si 0.90 19.61 29.54 -169.99 -5.02 14.59 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 C 0.12 2.64 6.22 -3.06 -0.02 2.62 16 26 N -0.20 -3.24 10.91 33.41 0.36 -2.87 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.17 1.61 8.06 -52.49 -0.42 1.18 16 31 H 0.19 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.13 0.95 8.04 -51.93 -0.42 0.53 16 33 H 0.12 1.12 7.85 -51.93 -0.41 0.71 16 34 H 0.06 0.71 7.48 -51.93 -0.39 0.32 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.09 1.78 7.77 -51.93 -0.40 1.37 16 37 H 0.07 1.39 8.04 -51.93 -0.42 0.98 16 38 H 0.39 9.32 6.99 45.56 0.32 9.64 16 39 H 0.27 6.32 8.31 -40.82 -0.34 5.98 16 40 H 0.07 1.64 7.63 -51.93 -0.40 1.25 16 41 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 LS Contribution 356.27 15.07 5.37 5.37 Total: -1.00 -32.58 356.27 -5.80 -38.38 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -4.60 Total: 9.13 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: -0.62 Total: 10.82 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.19 Total: -39.13 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -1.12 Total: -39.16 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.58 -5.80 -38.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001452254915.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.214 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds