Wall clock time and date at job start Tue Mar 31 2020 04:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.47205 * 109.46917 * 2 1 4 4 N 2.60800 * 109.46986 * 0.02562 * 2 1 3 5 5 C 1.52994 * 109.47159 * 240.00229 * 2 1 3 6 6 C 1.50701 * 109.47330 * 65.43394 * 5 2 1 7 7 O 1.20823 * 120.00103 * 0.02562 * 6 5 2 8 8 O 1.34230 * 120.00026 * 180.02562 * 6 5 2 9 9 C 1.50702 * 109.47188 * 119.99664 * 2 1 3 10 10 O 1.21275 * 120.00156 * 359.10857 * 9 2 1 11 11 N 1.34777 * 119.99814 * 179.10307 * 9 2 1 12 12 C 1.46964 * 120.59553 * 184.98872 * 11 9 2 13 13 C 1.53371 * 108.63239 * 235.24975 * 12 11 9 14 14 N 1.46963 * 108.63477 * 310.57042 * 13 12 11 15 15 C 1.34774 * 120.59430 * 235.20648 * 14 13 12 16 16 O 1.21688 * 120.00026 * 5.15705 * 15 14 13 17 17 C 1.46372 * 120.00272 * 185.16255 * 15 14 13 18 18 H 1.08002 * 119.99773 * 354.93722 * 17 15 14 19 19 C 1.40048 * 120.00336 * 174.94298 * 17 15 14 20 20 N 1.30663 * 119.99855 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99911 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46842 * 269.99567 * 21 19 17 23 23 H 1.48499 * 109.47424 * 29.99765 * 21 19 17 24 24 H 1.48498 * 109.46818 * 149.99852 * 21 19 17 25 25 C 1.46959 * 118.80961 * 55.48145 * 14 13 12 26 26 C 1.46963 * 120.59522 * 5.00787 * 11 9 2 27 27 H 1.09001 * 109.46969 * 304.86402 * 1 2 3 28 28 H 1.08992 * 109.47236 * 64.86568 * 1 2 3 29 29 H 1.09001 * 109.46852 * 184.87153 * 1 2 3 30 30 H 1.09003 * 109.47620 * 185.43814 * 5 2 1 31 31 H 1.09004 * 109.47008 * 305.43761 * 5 2 1 32 32 H 0.96695 * 117.00005 * 180.02562 * 8 6 5 33 33 H 1.08999 * 109.61405 * 115.50292 * 12 11 9 34 34 H 1.09001 * 109.60526 * 354.98654 * 12 11 9 35 35 H 1.09006 * 109.60581 * 190.82414 * 13 12 11 36 36 H 1.08999 * 109.61014 * 70.31767 * 13 12 11 37 37 H 0.97008 * 120.00223 * 179.97438 * 20 19 17 38 38 H 1.08997 * 109.61226 * 64.26831 * 25 14 13 39 39 H 1.09002 * 109.60647 * 184.77673 * 25 14 13 40 40 H 1.09008 * 109.61069 * 244.49746 * 26 11 9 41 41 H 1.09000 * 109.61251 * 4.83380 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0206 1.3879 0.0000 4 7 2.3993 2.4589 0.0011 5 6 2.0400 -0.7212 -1.2492 6 6 1.6506 0.0627 -2.4760 7 8 1.0293 1.0927 -2.3628 8 8 1.9939 -0.3835 -3.6945 9 6 2.0324 -0.7103 1.2305 10 8 1.2444 -1.1570 2.0370 11 7 3.3573 -0.8493 1.4347 12 6 3.8609 -1.6329 2.5715 13 6 4.8056 -0.7493 3.3955 14 7 5.7727 -0.1196 2.4855 15 6 7.0977 -0.2578 2.6902 16 8 7.5037 -0.9843 3.5780 17 6 8.0483 0.4660 1.8447 18 1 7.6923 1.0458 1.0059 19 6 9.4195 0.4065 2.1232 20 7 9.8502 -0.2946 3.1381 21 14 10.6327 1.3297 1.0436 22 1 11.0735 0.4506 -0.0692 23 1 9.9784 2.5414 0.4879 24 1 11.8107 1.7307 1.8539 25 6 5.2692 0.6686 1.3520 26 6 4.3244 -0.2196 0.5247 27 1 -0.3633 0.5875 0.8432 28 1 -0.3633 0.4365 -0.9303 29 1 -0.3633 -1.0240 0.0873 30 1 3.1257 -0.8063 -1.2019 31 1 1.5993 -1.7169 -1.2993 32 1 1.7222 0.1536 -4.4513 33 1 4.4027 -2.5043 2.2038 34 1 3.0251 -1.9540 3.1932 35 1 5.3351 -1.3615 4.1256 36 1 4.2308 0.0215 3.9088 37 1 10.8001 -0.3361 3.3309 38 1 4.7267 1.5380 1.7232 39 1 6.1050 0.9930 0.7321 40 1 4.8992 -0.9905 0.0113 41 1 3.7947 0.3901 -0.2073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573359960.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:32 Heat of formation + Delta-G solvation = -132.643253 kcal Electronic energy + Delta-G solvation = -28402.497474 eV Core-core repulsion = 24282.684943 eV Total energy + Delta-G solvation = -4119.812531 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.136 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -42.42698 -41.06865 -39.85957 -38.24081 -37.69267 -37.00688 -35.53650 -34.80851 -34.47376 -32.49112 -29.73950 -29.22907 -28.06860 -26.16883 -24.69899 -23.75899 -22.63826 -21.98920 -20.77362 -19.55558 -19.04230 -18.19917 -17.99610 -17.56895 -17.11553 -16.95880 -16.80648 -16.32599 -16.14640 -15.90185 -15.84049 -15.37082 -15.21444 -14.76913 -14.48732 -14.15746 -14.01224 -13.97795 -13.64137 -13.56485 -13.35806 -13.16410 -13.14264 -12.92577 -12.77982 -12.74732 -12.57455 -12.37137 -12.34032 -12.19011 -12.04025 -11.98838 -11.64593 -11.02958 -10.93866 -10.19431 -9.82013 -9.08189 -8.30575 -6.85654 1.01161 1.15335 1.39093 1.40945 1.41693 1.52103 1.56313 1.79446 2.07733 2.23138 2.44350 2.54365 2.73247 3.15751 3.20744 3.55326 3.59623 3.79154 3.84601 4.07021 4.15751 4.26126 4.34584 4.36414 4.43792 4.49201 4.58945 4.69693 4.75025 4.81229 4.82646 4.97931 5.16640 5.23676 5.37308 5.64314 5.66316 6.06923 6.09502 6.29579 6.32009 6.78849 6.87204 6.97394 7.34055 8.43175 8.64968 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015535 B = 0.003903 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.920295 B = 7172.610503 C = 8290.226446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.041 3.959 3 C 0.223 3.777 4 N -0.437 5.437 5 C -0.120 4.120 6 C 0.488 3.512 7 O -0.536 6.536 8 O -0.504 6.504 9 C 0.536 3.464 10 O -0.537 6.537 11 N -0.598 5.598 12 C 0.113 3.887 13 C 0.104 3.896 14 N -0.643 5.643 15 C 0.544 3.456 16 O -0.625 6.625 17 C -0.568 4.568 18 H 0.094 0.906 19 C 0.033 3.967 20 N -0.820 5.820 21 Si 0.990 3.010 22 H -0.257 1.257 23 H -0.251 1.251 24 H -0.277 1.277 25 C 0.107 3.893 26 C 0.088 3.912 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.137 0.863 31 H 0.174 0.826 32 H 0.432 0.568 33 H 0.083 0.917 34 H 0.110 0.890 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.274 0.726 38 H 0.042 0.958 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.678 -2.983 -15.319 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.034 3.966 3 C -0.094 4.094 4 N -0.112 5.112 5 C -0.158 4.158 6 C 0.332 3.668 7 O -0.426 6.426 8 O -0.317 6.317 9 C 0.321 3.679 10 O -0.413 6.413 11 N -0.330 5.330 12 C -0.010 4.010 13 C -0.021 4.021 14 N -0.380 5.380 15 C 0.351 3.649 16 O -0.512 6.512 17 C -0.604 4.604 18 H 0.112 0.888 19 C -0.182 4.182 20 N -0.449 5.449 21 Si 0.810 3.190 22 H -0.182 1.182 23 H -0.174 1.174 24 H -0.202 1.202 25 C -0.017 4.017 26 C -0.036 4.036 27 H 0.081 0.919 28 H 0.108 0.892 29 H 0.124 0.876 30 H 0.154 0.846 31 H 0.191 0.809 32 H 0.294 0.706 33 H 0.102 0.898 34 H 0.128 0.872 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.217 -2.018 -13.927 21.472 hybrid contribution 0.490 0.673 -0.291 0.882 sum -15.727 -1.345 -14.218 21.244 Atomic orbital electron populations 1.21913 0.86851 1.05856 1.04344 1.18400 1.00575 0.82866 0.94769 1.28456 0.93012 0.94563 0.93412 1.81256 1.09308 1.12545 1.08129 1.21844 1.06786 1.01957 0.85206 1.23033 0.75097 0.83168 0.85533 1.90777 1.38994 1.25566 1.87292 1.84466 1.74320 1.56157 1.16797 1.19899 0.81817 0.79698 0.86446 1.90730 1.54952 1.50054 1.45589 1.48104 1.05176 1.51051 1.28649 1.21984 0.97884 0.93303 0.87783 1.21614 0.90544 0.96521 0.93391 1.47999 1.05304 1.55154 1.29509 1.18620 0.80851 0.81306 0.84121 1.90556 1.78136 1.44138 1.38381 1.21466 0.91406 1.32307 1.15198 0.88804 1.26901 1.01095 0.94469 0.95780 1.70167 1.15923 1.33069 1.25741 0.85120 0.76728 0.79066 0.78090 1.18188 1.17422 1.20200 1.21956 0.98017 0.92838 0.88897 1.22684 0.91062 0.97885 0.91957 0.91862 0.89197 0.87620 0.84551 0.80897 0.70575 0.89829 0.87208 0.90704 0.93308 0.91578 0.93918 0.87962 0.87566 0.88275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 7.59 71.98 0.55 -1.52 16 2 C 0.04 0.74 0.47 -54.73 -0.03 0.72 16 3 C 0.22 5.56 8.85 89.44 0.79 6.35 16 4 N -0.44 -13.28 18.54 20.01 0.37 -12.90 16 5 C -0.12 -1.32 4.56 29.85 0.14 -1.19 16 6 C 0.49 6.39 7.71 71.24 0.55 6.94 16 7 O -0.54 -10.70 13.40 21.97 0.29 -10.41 16 8 O -0.50 -4.12 13.42 -51.42 -0.69 -4.81 16 9 C 0.54 12.27 6.46 87.66 0.57 12.84 16 10 O -0.54 -14.69 15.34 -3.01 -0.05 -14.74 16 11 N -0.60 -14.84 2.94 -817.15 -2.40 -17.24 16 12 C 0.11 3.20 6.60 86.42 0.57 3.77 16 13 C 0.10 3.89 6.60 86.42 0.57 4.46 16 14 N -0.64 -27.70 2.94 -822.26 -2.42 -30.11 16 15 C 0.54 30.13 7.62 86.36 0.66 30.78 16 16 O -0.63 -40.26 14.45 -4.31 -0.06 -40.32 16 17 C -0.57 -30.42 8.87 24.83 0.22 -30.20 16 18 H 0.09 4.45 5.66 -2.91 -0.02 4.43 16 19 C 0.03 1.78 5.50 85.31 0.47 2.25 16 20 N -0.82 -48.63 11.84 21.83 0.26 -48.37 16 21 Si 0.99 39.31 29.56 68.60 2.03 41.34 16 22 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 23 H -0.25 -9.31 7.11 99.48 0.71 -8.61 16 24 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 25 C 0.11 3.68 6.51 86.56 0.56 4.25 16 26 C 0.09 2.13 4.50 86.56 0.39 2.52 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 1.38 5.92 -2.39 -0.01 1.37 16 29 H 0.11 1.24 7.97 -2.39 -0.02 1.22 16 30 H 0.14 1.36 5.05 -2.39 -0.01 1.35 16 31 H 0.17 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.43 0.41 9.10 -74.06 -0.67 -0.26 16 33 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.11 2.88 6.99 -2.39 -0.02 2.86 16 35 H 0.07 3.19 6.99 -2.38 -0.02 3.17 16 36 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.27 14.80 8.29 -92.70 -0.77 14.03 16 38 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.10 3.62 5.34 -2.39 -0.01 3.60 16 40 H 0.11 2.26 8.07 -2.38 -0.02 2.24 16 41 H 0.10 2.06 3.35 -2.39 -0.01 2.05 16 Total: -1.00 -83.59 339.01 3.78 -79.81 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.45 Total: 15.80 kcal Atomic # 6 Polarization: 35.95 SS G_CDS: 6.00 Total: 41.95 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -4.19 Total: -108.63 kcal Atomic # 8 Polarization: -69.78 SS G_CDS: -0.50 Total: -70.28 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Total: -83.59 3.78 -79.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573359960.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.830 kcal (2) G-P(sol) polarization free energy of solvation -83.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds