Wall clock time and date at job start Tue Mar 31 2020 06:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86801 * 119.99859 * 2 1 4 4 H 1.48511 * 109.46988 * 239.99958 * 3 2 1 5 5 H 1.48500 * 109.47331 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47454 * 120.00034 * 3 2 1 7 7 C 1.38952 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99975 * 179.97438 * 7 2 1 9 9 N 1.37093 * 119.99967 * 359.97438 * 7 2 1 10 10 C 1.34781 * 120.00280 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99446 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00479 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47300 * 179.97438 * 12 10 9 14 14 C 1.46844 * 111.00262 * 293.95989 * 13 12 10 15 15 C 1.53035 * 109.52293 * 185.83858 * 14 13 12 16 16 C 1.53122 * 109.27716 * 300.82104 * 15 14 13 17 17 C 1.53113 * 109.16117 * 57.65372 * 16 15 14 18 18 H 1.08998 * 109.50657 * 62.33322 * 17 16 15 19 19 N 1.46505 * 109.50089 * 182.40740 * 17 16 15 20 20 C 1.34781 * 126.58707 * 34.99974 * 19 17 16 21 21 C 1.36672 * 106.83670 * 180.02562 * 20 19 17 22 22 C 1.47375 * 125.78282 * 180.02562 * 21 20 19 23 23 O 1.21517 * 119.99915 * 359.97438 * 22 21 20 24 24 O 1.34752 * 120.00282 * 180.02562 * 22 21 20 25 25 N 1.34440 * 108.43554 * 359.97438 * 21 20 19 26 26 N 1.28760 * 109.51404 * 359.97438 * 25 21 20 27 27 C 1.46849 * 110.99465 * 58.16827 * 13 12 10 28 28 H 0.97003 * 120.00312 * 0.02562 * 1 2 3 29 29 H 0.97002 * 119.99968 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.46789 * 60.00408 * 12 10 9 31 31 H 1.08999 * 109.47340 * 300.00768 * 12 10 9 32 32 H 1.08995 * 109.46520 * 65.82211 * 14 13 12 33 33 H 1.08999 * 109.45902 * 305.85332 * 14 13 12 34 34 H 1.08993 * 109.50398 * 180.87953 * 15 14 13 35 35 H 1.09003 * 109.50353 * 60.75789 * 15 14 13 36 36 H 1.09003 * 109.51800 * 297.74579 * 16 15 14 37 37 H 1.08997 * 109.57532 * 177.59483 * 16 15 14 38 38 H 1.07992 * 126.58124 * 0.03694 * 20 19 17 39 39 H 0.96705 * 116.99850 * 180.02562 * 24 22 21 40 40 H 1.09001 * 109.46427 * 54.14677 * 27 13 12 41 41 H 1.08994 * 109.46495 * 294.17319 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6964 -1.2126 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0001 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5579 0.0016 11 8 3.2103 -3.5578 0.0011 12 6 1.2439 -4.8630 0.0034 13 7 2.1985 -5.9795 0.0024 14 6 2.9617 -6.0183 -1.2515 15 6 3.8380 -7.2726 -1.2783 16 6 4.7906 -7.2494 -0.0796 17 6 3.9720 -7.1601 1.2112 18 1 3.3429 -8.0452 1.3052 19 7 4.8776 -7.0795 2.3600 20 6 6.0706 -6.4537 2.4001 21 6 6.5688 -6.6316 3.6603 22 6 7.8564 -6.1162 4.1587 23 8 8.5774 -5.4700 3.4243 24 8 8.2348 -6.3624 5.4283 25 7 5.6846 -7.3554 4.3687 26 7 4.6692 -7.6378 3.6291 27 6 3.0918 -5.9090 1.1658 28 1 -0.4851 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0016 30 1 0.6163 -4.9213 -0.8859 31 1 0.6181 -4.9201 0.8940 32 1 3.5932 -5.1326 -1.3199 33 1 2.2724 -6.0388 -2.0957 34 1 4.4160 -7.2931 -2.2021 35 1 3.2062 -8.1592 -1.2238 36 1 5.4488 -6.3838 -0.1543 37 1 5.3877 -8.1613 -0.0700 38 1 6.5423 -5.9149 1.5918 39 1 9.0875 -6.0035 5.7097 40 1 2.4971 -5.8501 2.0773 41 1 3.7227 -5.0238 1.0861 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608188217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:12 Heat of formation + Delta-G solvation = -46.299435 kcal Electronic energy + Delta-G solvation = -27458.644870 eV Core-core repulsion = 23374.869239 eV Total energy + Delta-G solvation = -4083.775631 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.48882 -41.15822 -40.87362 -39.10922 -37.17360 -36.31984 -35.59447 -33.70301 -33.28902 -32.34923 -30.97177 -28.98521 -26.60652 -26.12394 -25.10983 -24.18483 -22.93191 -22.29035 -21.25552 -20.74352 -19.85192 -19.35191 -18.72043 -17.88179 -17.43710 -17.36332 -16.74056 -16.56452 -16.33972 -15.95117 -15.84561 -15.73017 -15.67740 -15.13581 -14.76371 -14.65629 -14.30268 -13.86814 -13.53760 -13.40142 -13.33246 -13.04833 -12.98733 -12.65720 -12.65337 -12.48803 -12.35083 -12.17492 -11.99493 -11.92465 -11.81979 -11.70183 -11.40072 -11.26889 -11.00402 -10.56609 -10.03278 -9.11608 -8.50195 -5.99854 -0.08901 0.31961 0.82380 1.34375 1.38335 1.48102 1.84775 1.91672 1.97203 2.25281 2.86433 3.10047 3.16349 3.20541 3.26737 3.60095 3.66437 3.84597 3.94926 4.02885 4.11519 4.22442 4.36010 4.39966 4.44415 4.62138 4.62984 4.67383 4.82652 4.91278 4.97349 5.03158 5.10857 5.25052 5.35637 5.41180 5.42706 5.78240 5.95960 6.00381 6.53839 6.67586 6.95354 7.07441 7.51047 8.04672 8.65016 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011216 B = 0.003530 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.853272 B = 7929.379131 C = 9580.157540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.009 4.009 3 Si 0.987 3.013 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.275 1.275 7 C -0.334 4.334 8 H 0.079 0.921 9 N -0.568 5.568 10 C 0.406 3.594 11 O -0.620 6.620 12 C 0.050 3.950 13 N -0.493 5.493 14 C 0.031 3.969 15 C -0.096 4.096 16 C -0.128 4.128 17 C 0.159 3.841 18 H 0.135 0.865 19 N -0.338 5.338 20 C 0.119 3.881 21 C -0.114 4.114 22 C 0.585 3.415 23 O -0.534 6.534 24 O -0.495 6.495 25 N -0.203 5.203 26 N -0.076 5.076 27 C 0.029 3.971 28 H 0.278 0.722 29 H 0.396 0.604 30 H 0.119 0.881 31 H 0.107 0.893 32 H 0.036 0.964 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.224 0.776 39 H 0.438 0.562 40 H 0.063 0.937 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.850 -15.839 0.295 17.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.210 4.210 3 Si 0.811 3.189 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.201 1.201 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.204 5.204 10 C 0.193 3.807 11 O -0.508 6.508 12 C -0.082 4.082 13 N -0.216 5.216 14 C -0.097 4.097 15 C -0.135 4.135 16 C -0.166 4.166 17 C 0.059 3.941 18 H 0.153 0.847 19 N -0.121 5.121 20 C -0.040 4.040 21 C -0.252 4.252 22 C 0.428 3.572 23 O -0.423 6.423 24 O -0.308 6.308 25 N -0.078 5.078 26 N -0.057 5.057 27 C -0.100 4.100 28 H 0.088 0.912 29 H 0.230 0.770 30 H 0.137 0.863 31 H 0.125 0.875 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.240 0.760 39 H 0.300 0.700 40 H 0.081 0.919 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.059 -16.943 0.873 18.375 hybrid contribution 1.214 2.887 -0.312 3.147 sum 8.273 -14.055 0.560 16.319 Atomic orbital electron populations 1.69651 1.06798 1.29425 1.49907 1.25988 0.96451 1.02348 0.96193 0.85068 0.77863 0.77046 0.78879 1.19562 1.19513 1.20052 1.19599 0.92654 0.84160 1.49994 0.90318 1.42123 1.09434 1.05019 1.63846 1.22111 0.88803 0.87066 0.82685 1.90383 1.15434 1.87559 1.57471 1.22146 0.95232 0.84949 1.05857 1.62455 1.17329 1.39291 1.02499 1.22430 0.97216 0.98704 0.91353 1.21480 0.96874 0.97747 0.97368 1.22068 0.98526 1.04181 0.91857 1.21865 0.90022 1.01173 0.81060 0.84699 1.50845 1.14225 1.34806 1.12208 1.23662 0.86886 0.94232 0.99182 1.20394 0.98776 1.12649 0.93352 1.18937 0.83077 0.75136 0.80067 1.90942 1.53950 1.39057 1.58376 1.84595 1.44964 1.73223 1.28045 1.74731 0.98751 1.09072 1.25211 1.82013 1.17160 1.19575 0.86922 1.22582 0.96179 0.96882 0.94379 0.91236 0.77006 0.86297 0.87529 0.94601 0.89670 0.88460 0.89009 0.91273 0.88210 0.75961 0.69955 0.91876 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.36 13.05 21.66 0.28 -48.07 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 3 Si 0.99 42.09 29.55 68.60 2.03 44.12 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.33 -18.22 9.68 84.04 0.81 -17.41 16 8 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 9 N -0.57 -27.44 5.29 -306.98 -1.62 -29.06 16 10 C 0.41 17.32 7.20 87.66 0.63 17.95 16 11 O -0.62 -29.76 11.20 -3.09 -0.03 -29.79 16 12 C 0.05 1.51 5.86 85.56 0.50 2.01 16 13 N -0.49 -13.13 4.86 -900.96 -4.38 -17.51 16 14 C 0.03 0.75 5.09 86.33 0.44 1.19 16 15 C -0.10 -1.56 6.09 30.65 0.19 -1.37 16 16 C -0.13 -2.18 4.99 30.67 0.15 -2.02 16 17 C 0.16 3.44 3.39 45.04 0.15 3.59 16 18 H 0.14 2.54 8.14 -2.39 -0.02 2.52 16 19 N -0.34 -8.41 3.54 -326.26 -1.16 -9.56 16 20 C 0.12 2.91 10.40 83.87 0.87 3.78 16 21 C -0.11 -3.11 7.02 40.78 0.29 -2.82 16 22 C 0.59 14.65 8.33 70.23 0.59 15.23 16 23 O -0.53 -15.19 17.65 19.78 0.35 -14.84 16 24 O -0.50 -9.49 13.43 -56.62 -0.76 -10.25 16 25 N -0.20 -6.11 12.39 -50.04 -0.62 -6.73 16 26 N -0.08 -2.23 13.78 37.02 0.51 -1.72 16 27 C 0.03 0.84 4.58 86.33 0.40 1.23 16 28 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 29 H 0.40 18.35 7.90 -92.71 -0.73 17.62 16 30 H 0.12 3.07 8.06 -2.39 -0.02 3.05 16 31 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.04 1.18 6.00 -2.39 -0.01 1.16 16 33 H 0.08 1.89 8.06 -2.39 -0.02 1.88 16 34 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 1.33 7.12 -2.39 -0.02 1.31 16 37 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.22 4.48 7.29 -2.91 -0.02 4.46 16 39 H 0.44 3.45 9.11 -74.05 -0.67 2.78 16 40 H 0.06 1.94 8.12 -2.39 -0.02 1.92 16 41 H 0.06 2.25 5.36 -2.39 -0.01 2.23 16 Total: -1.00 -70.57 347.40 -0.22 -70.79 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.30 Total: 31.28 kcal Atomic # 6 Polarization: 15.86 SS G_CDS: 5.48 Total: 21.35 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -6.98 Total: -112.65 kcal Atomic # 8 Polarization: -54.44 SS G_CDS: -0.45 Total: -54.88 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -70.57 -0.22 -70.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608188217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.491 kcal (2) G-P(sol) polarization free energy of solvation -70.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds