Wall clock time and date at job start Tue Mar 31 2020 06:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86792 * 119.99918 * 2 1 4 4 H 1.48503 * 109.47233 * 269.99811 * 3 2 1 5 5 H 1.48501 * 109.47238 * 30.00103 * 3 2 1 6 6 H 1.48500 * 109.47219 * 149.99776 * 3 2 1 7 7 C 1.38812 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00276 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00158 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47206 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.49516 * 55.06543 * 11 10 9 13 13 C 1.53035 * 109.49474 * 175.15917 * 11 10 9 14 14 C 1.53042 * 109.53590 * 181.31664 * 13 11 10 15 15 C 1.53630 * 109.24171 * 298.51301 * 14 13 11 16 16 N 1.46927 * 108.54239 * 54.85531 * 15 14 13 17 17 C 1.34777 * 120.62492 * 126.36730 * 16 15 14 18 18 O 1.21579 * 119.99201 * 189.70688 * 17 16 15 19 19 C 1.47615 * 120.00368 * 9.71242 * 17 16 15 20 20 N 1.33048 * 120.53130 * 7.55749 * 19 17 16 21 21 N 1.28715 * 120.36935 * 180.02562 * 20 19 17 22 22 C 1.32946 * 121.55361 * 359.97438 * 21 20 19 23 23 O 1.35286 * 119.46828 * 179.97438 * 22 21 20 24 24 N 1.32468 * 121.05945 * 0.02562 * 22 21 20 25 25 C 1.32864 * 119.51351 * 359.97438 * 24 22 21 26 26 O 1.35282 * 120.71619 * 179.97438 * 25 24 22 27 27 C 1.46919 * 118.74015 * 306.09467 * 16 15 14 28 28 H 0.96999 * 120.00482 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99978 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.46822 * 59.99725 * 10 9 7 31 31 H 1.09003 * 109.46923 * 299.99619 * 10 9 7 32 32 H 1.08994 * 109.46671 * 301.33531 * 13 11 10 33 33 H 1.09003 * 109.46096 * 61.31619 * 13 11 10 34 34 H 1.09002 * 109.49705 * 58.58692 * 14 13 11 35 35 H 1.08999 * 109.49754 * 178.65357 * 14 13 11 36 36 H 1.08999 * 109.73776 * 295.11564 * 15 14 13 37 37 H 1.09007 * 109.66200 * 174.54976 * 15 14 13 38 38 H 0.96697 * 114.00248 * 270.01820 * 23 22 21 39 39 H 0.96695 * 114.00351 * 90.00341 * 26 25 24 40 40 H 1.08996 * 109.59181 * 173.65007 * 27 16 15 41 41 H 1.08999 * 109.58645 * 293.93362 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8198 0.0012 12 1 0.3798 -4.7141 -0.8409 13 6 1.8244 -6.1421 -0.1206 14 6 0.8290 -7.3040 -0.1530 15 6 0.0315 -7.3244 1.1599 16 7 -0.5870 -6.0055 1.3514 17 6 -1.9128 -5.8936 1.5663 18 8 -2.4413 -4.7988 1.5474 19 6 -2.7232 -7.1001 1.8246 20 7 -2.1386 -8.2829 1.9964 21 7 -2.8483 -9.3330 2.2210 22 6 -4.1747 -9.2748 2.2891 23 8 -4.8791 -10.4050 2.5268 24 7 -4.8177 -8.1280 2.1271 25 6 -4.1267 -7.0175 1.8931 26 8 -4.7585 -5.8334 1.7233 27 6 0.2681 -4.8115 1.3103 28 1 -0.4851 0.8400 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.6847 -3.7145 0.8905 31 1 2.6846 -3.7146 -0.8895 32 1 2.4108 -6.1406 -1.0393 33 1 2.4900 -6.2583 0.7348 34 1 0.1471 -7.1755 -0.9937 35 1 1.3701 -8.2437 -0.2638 36 1 0.7003 -7.5389 1.9935 37 1 -0.7448 -8.0877 1.1058 38 1 -5.1350 -10.8846 1.7271 39 1 -4.8915 -5.3375 2.5427 40 1 -0.3519 -3.9162 1.3554 41 1 0.9541 -4.8240 2.1572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690412858.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:43 Heat of formation + Delta-G solvation = 2.991002 kcal Electronic energy + Delta-G solvation = -27576.104492 eV Core-core repulsion = 23494.466255 eV Total energy + Delta-G solvation = -4081.638237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.61114 -40.16097 -38.84048 -38.17615 -37.50867 -35.11484 -34.69768 -33.14348 -32.11296 -31.66278 -29.69014 -27.00833 -25.96662 -25.36586 -24.78820 -23.13836 -21.58016 -20.88648 -20.49456 -20.11530 -19.49530 -18.95032 -17.40395 -16.98233 -16.81363 -16.23908 -16.07303 -15.28433 -15.05289 -14.70630 -14.34147 -14.28331 -13.85127 -13.57797 -13.47067 -13.21396 -13.15142 -12.98126 -12.64542 -12.43407 -12.35207 -12.08616 -11.94035 -11.26574 -11.04481 -10.91426 -10.81055 -10.67549 -10.44393 -10.36495 -10.30818 -10.17493 -9.98551 -9.68250 -9.55732 -8.84729 -8.58873 -6.87909 -5.70677 -3.00420 -0.47264 -0.22266 1.98394 2.17026 2.54293 2.67749 2.95318 3.26970 3.46684 3.51443 3.53516 3.91107 4.04449 4.38812 4.61536 4.78541 4.90572 4.98743 5.06138 5.21348 5.40833 5.62175 5.62971 5.73679 5.87083 5.87830 5.95261 5.96775 6.12192 6.14114 6.20495 6.40302 6.50696 6.55341 6.59505 6.77095 6.80130 6.88488 7.27226 7.59423 7.74135 7.93035 8.47120 9.58204 10.15972 10.50281 11.51578 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020107 B = 0.003014 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.236120 B = 9286.585446 C =10509.318161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.161 3.839 11 C -0.107 4.107 12 H 0.075 0.925 13 C -0.114 4.114 14 C -0.134 4.134 15 C 0.082 3.918 16 N -0.586 5.586 17 C 0.572 3.428 18 O -0.498 6.498 19 C -0.045 4.045 20 N -0.109 5.109 21 N -0.292 5.292 22 C 0.479 3.521 23 O -0.448 6.448 24 N -0.509 5.509 25 C 0.423 3.577 26 O -0.440 6.440 27 C 0.119 3.881 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.021 0.979 31 H 0.022 0.978 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.122 0.878 38 H 0.422 0.578 39 H 0.426 0.574 40 H 0.106 0.894 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.517 -23.037 4.028 24.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.032 3.968 11 C -0.126 4.126 12 H 0.094 0.906 13 C -0.152 4.152 14 C -0.172 4.172 15 C -0.041 4.041 16 N -0.318 5.318 17 C 0.354 3.646 18 O -0.371 6.371 19 C -0.197 4.197 20 N 0.033 4.967 21 N -0.153 5.153 22 C 0.174 3.826 23 O -0.250 6.250 24 N -0.252 5.252 25 C 0.226 3.774 26 O -0.248 6.248 27 C -0.002 4.002 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.038 0.962 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.139 0.861 38 H 0.284 0.716 39 H 0.291 0.709 40 H 0.124 0.876 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.358 -23.256 4.202 24.473 hybrid contribution -0.477 1.534 -0.173 1.616 sum -6.836 -21.722 4.029 23.126 Atomic orbital electron populations 1.69671 1.05037 1.25623 1.57451 1.24753 0.95501 0.97659 1.03020 0.86209 0.78626 0.83990 0.77459 1.21791 1.21804 1.20810 1.19201 0.90973 0.84171 1.42924 0.91232 1.42423 1.05957 0.99948 1.89502 1.20639 0.92942 0.85084 0.98093 1.21689 0.98006 0.95318 0.97633 0.90649 1.21548 0.97545 0.93681 1.02399 1.22019 0.98528 0.99167 0.97481 1.22790 0.99097 0.84528 0.97722 1.48033 1.05937 1.09322 1.68544 1.17094 0.82178 0.86103 0.79195 1.90938 1.70517 1.25500 1.50147 1.24276 0.94106 0.97057 1.04284 1.74102 1.26673 0.94436 1.01481 1.73879 1.05219 1.22015 1.14199 1.21849 0.86375 0.86106 0.88221 1.84697 1.71920 1.32515 1.35902 1.68217 1.42695 0.99554 1.14730 1.19896 0.86067 0.86854 0.84615 1.84668 1.78054 1.25580 1.36531 1.21886 0.93241 0.87263 0.97768 0.93497 0.78067 0.96166 0.95981 0.91491 0.91622 0.91796 0.90686 0.90792 0.86098 0.71641 0.70924 0.87582 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.63 13.06 55.49 0.72 -27.91 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.63 5.38 -59.91 -0.32 -18.95 16 10 C 0.16 3.16 5.65 -4.04 -0.02 3.13 16 11 C -0.11 -1.70 2.38 -90.50 -0.21 -1.91 16 12 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 13 C -0.11 -1.37 5.16 -26.69 -0.14 -1.50 16 14 C -0.13 -1.38 6.10 -26.38 -0.16 -1.54 16 15 C 0.08 0.89 5.89 -3.48 -0.02 0.87 16 16 N -0.59 -8.10 2.97 -173.70 -0.52 -8.61 16 17 C 0.57 8.39 7.63 -12.43 -0.09 8.29 16 18 O -0.50 -8.87 14.75 -15.92 -0.23 -9.10 16 19 C -0.04 -0.54 6.67 -82.56 -0.55 -1.09 16 20 N -0.11 -1.21 7.50 33.45 0.25 -0.96 16 21 N -0.29 -3.05 11.60 29.21 0.34 -2.71 16 22 C 0.48 4.59 8.81 -90.58 -0.80 3.79 16 23 O -0.45 -3.04 13.63 -17.55 -0.24 -3.28 16 24 N -0.51 -5.44 10.57 -14.33 -0.15 -5.59 16 25 C 0.42 4.79 7.84 -16.15 -0.13 4.66 16 26 O -0.44 -4.81 11.79 -38.75 -0.46 -5.27 16 27 C 0.12 1.91 5.53 -3.71 -0.02 1.89 16 28 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.39 10.44 6.89 -40.82 -0.28 10.16 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.12 1.27 4.12 -120.17 -0.49 0.78 16 38 H 0.42 0.49 9.06 45.56 0.41 0.90 16 39 H 0.43 2.79 9.06 45.56 0.41 3.20 16 40 H 0.11 2.09 6.21 -51.93 -0.32 1.77 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 344.02 15.07 5.18 5.18 Total: -1.00 -35.58 344.02 -6.46 -42.05 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -3.62 Total: 8.38 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: -2.39 Total: 9.16 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: 0.33 Total: -64.73 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: -0.93 Total: -17.65 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.58 -6.46 -42.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690412858.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.036 kcal (2) G-P(sol) polarization free energy of solvation -35.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds