Wall clock time and date at job start Tue Mar 31 2020 06:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86792 * 119.99918 * 2 1 4 4 H 1.48503 * 109.47233 * 269.99811 * 3 2 1 5 5 H 1.48501 * 109.47238 * 30.00103 * 3 2 1 6 6 H 1.48500 * 109.47219 * 149.99776 * 3 2 1 7 7 C 1.38812 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00276 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00019 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00158 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47206 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.49516 * 55.06543 * 11 10 9 13 13 C 1.53035 * 109.49474 * 175.15917 * 11 10 9 14 14 C 1.53042 * 109.53590 * 181.31664 * 13 11 10 15 15 C 1.53630 * 109.24171 * 298.51301 * 14 13 11 16 16 N 1.46927 * 108.54239 * 54.85531 * 15 14 13 17 17 C 1.34777 * 120.62492 * 126.36730 * 16 15 14 18 18 O 1.21579 * 119.99201 * 189.70688 * 17 16 15 19 19 C 1.47615 * 120.00368 * 9.71242 * 17 16 15 20 20 N 1.33048 * 120.53130 * 7.55749 * 19 17 16 21 21 N 1.28715 * 120.36935 * 180.02562 * 20 19 17 22 22 C 1.32946 * 121.55361 * 359.97438 * 21 20 19 23 23 O 1.35286 * 119.46828 * 179.97438 * 22 21 20 24 24 N 1.32468 * 121.05945 * 0.02562 * 22 21 20 25 25 C 1.32864 * 119.51351 * 359.97438 * 24 22 21 26 26 O 1.35282 * 120.71619 * 179.97438 * 25 24 22 27 27 C 1.46919 * 118.74015 * 306.09467 * 16 15 14 28 28 H 0.96999 * 120.00482 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99978 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.46822 * 59.99725 * 10 9 7 31 31 H 1.09003 * 109.46923 * 299.99619 * 10 9 7 32 32 H 1.08994 * 109.46671 * 301.33531 * 13 11 10 33 33 H 1.09003 * 109.46096 * 61.31619 * 13 11 10 34 34 H 1.09002 * 109.49705 * 58.58692 * 14 13 11 35 35 H 1.08999 * 109.49754 * 178.65357 * 14 13 11 36 36 H 1.08999 * 109.73776 * 295.11564 * 15 14 13 37 37 H 1.09007 * 109.66200 * 174.54976 * 15 14 13 38 38 H 0.96697 * 114.00248 * 270.01820 * 23 22 21 39 39 H 0.96695 * 114.00351 * 90.00341 * 26 25 24 40 40 H 1.08996 * 109.59181 * 173.65007 * 27 16 15 41 41 H 1.08999 * 109.58645 * 293.93362 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0638 -4.8198 0.0012 12 1 0.3798 -4.7141 -0.8409 13 6 1.8244 -6.1421 -0.1206 14 6 0.8290 -7.3040 -0.1530 15 6 0.0315 -7.3244 1.1599 16 7 -0.5870 -6.0055 1.3514 17 6 -1.9128 -5.8936 1.5663 18 8 -2.4413 -4.7988 1.5474 19 6 -2.7232 -7.1001 1.8246 20 7 -2.1386 -8.2829 1.9964 21 7 -2.8483 -9.3330 2.2210 22 6 -4.1747 -9.2748 2.2891 23 8 -4.8791 -10.4050 2.5268 24 7 -4.8177 -8.1280 2.1271 25 6 -4.1267 -7.0175 1.8931 26 8 -4.7585 -5.8334 1.7233 27 6 0.2681 -4.8115 1.3103 28 1 -0.4851 0.8400 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 2.6847 -3.7145 0.8905 31 1 2.6846 -3.7146 -0.8895 32 1 2.4108 -6.1406 -1.0393 33 1 2.4900 -6.2583 0.7348 34 1 0.1471 -7.1755 -0.9937 35 1 1.3701 -8.2437 -0.2638 36 1 0.7003 -7.5389 1.9935 37 1 -0.7448 -8.0877 1.1058 38 1 -5.1350 -10.8846 1.7271 39 1 -4.8915 -5.3375 2.5427 40 1 -0.3519 -3.9162 1.3554 41 1 0.9541 -4.8240 2.1572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690412858.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:42 Heat of formation + Delta-G solvation = -30.879032 kcal Electronic energy + Delta-G solvation = -27577.573207 eV Core-core repulsion = 23494.466255 eV Total energy + Delta-G solvation = -4083.106952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.45839 -41.24354 -39.68031 -38.90246 -38.68373 -36.62537 -35.67050 -34.56847 -33.19610 -33.00260 -31.33612 -27.98720 -27.31638 -26.53939 -25.77498 -24.83629 -22.75661 -22.17364 -21.22586 -21.03934 -20.58551 -19.70229 -19.14708 -18.30903 -17.65593 -17.27319 -17.00091 -16.67926 -16.37247 -16.08916 -15.46181 -15.35961 -15.18467 -15.08554 -14.74762 -14.30857 -14.06537 -14.03857 -13.90332 -13.69198 -13.54578 -13.00908 -12.91847 -12.81175 -12.76295 -12.46010 -12.16294 -11.97530 -11.90477 -11.76829 -11.57370 -11.33129 -11.31264 -11.11754 -10.93289 -10.54615 -9.71949 -8.97887 -7.91950 -5.21907 -1.30994 -1.06429 1.17924 1.27980 1.47453 1.49817 1.58273 1.64533 1.73388 1.99655 2.34154 2.57551 3.02785 3.22253 3.41007 3.59533 3.74334 3.91083 3.96778 4.09755 4.15183 4.24131 4.36633 4.54695 4.70754 4.79937 4.80982 4.95087 5.02530 5.07362 5.12070 5.17582 5.26056 5.37132 5.46936 5.50355 5.54443 6.13227 6.17564 6.20577 6.28909 6.72200 6.85374 7.34753 8.11620 8.33450 9.31373 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.020107 B = 0.003014 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.236120 B = 9286.585446 C =10509.318161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.975 3.025 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.267 1.267 7 C -0.244 4.244 8 H 0.079 0.921 9 N -0.748 5.748 10 C 0.159 3.841 11 C -0.095 4.095 12 H 0.052 0.948 13 C -0.107 4.107 14 C -0.127 4.127 15 C 0.079 3.921 16 N -0.585 5.585 17 C 0.569 3.431 18 O -0.542 6.542 19 C -0.056 4.056 20 N -0.098 5.098 21 N -0.294 5.294 22 C 0.493 3.507 23 O -0.445 6.445 24 N -0.515 5.515 25 C 0.428 3.572 26 O -0.454 6.454 27 C 0.127 3.873 28 H 0.250 0.750 29 H 0.372 0.628 30 H 0.030 0.970 31 H 0.026 0.974 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.110 0.890 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.446 0.554 39 H 0.441 0.559 40 H 0.061 0.939 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.277 -25.582 4.302 26.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.804 3.196 4 H -0.215 1.215 5 H -0.224 1.224 6 H -0.191 1.191 7 C -0.376 4.376 8 H 0.097 0.903 9 N -0.391 5.391 10 C 0.032 3.968 11 C -0.115 4.115 12 H 0.070 0.930 13 C -0.145 4.145 14 C -0.165 4.165 15 C -0.042 4.042 16 N -0.316 5.316 17 C 0.353 3.647 18 O -0.418 6.418 19 C -0.208 4.208 20 N 0.043 4.957 21 N -0.157 5.157 22 C 0.189 3.811 23 O -0.252 6.252 24 N -0.259 5.259 25 C 0.231 3.769 26 O -0.265 6.265 27 C 0.005 3.995 28 H 0.059 0.941 29 H 0.204 0.796 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.128 0.872 36 H 0.111 0.889 37 H 0.146 0.854 38 H 0.314 0.686 39 H 0.309 0.691 40 H 0.080 0.920 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.086 -25.879 4.464 26.749 hybrid contribution -0.893 2.155 -0.238 2.345 sum -5.979 -23.724 4.227 24.828 Atomic orbital electron populations 1.69856 1.06761 1.25970 1.59540 1.25623 0.96347 1.01296 1.03843 0.85119 0.77730 0.79390 0.77389 1.21460 1.22415 1.19121 1.19660 0.91568 0.85310 1.41033 0.90314 1.42678 1.05606 1.01412 1.89405 1.20838 0.93554 0.84108 0.98314 1.21549 0.97095 0.96297 0.96571 0.92984 1.21527 0.97718 0.91600 1.03608 1.22016 0.98027 0.99874 0.96632 1.23050 0.99585 0.82779 0.98831 1.48097 1.05680 1.09794 1.68011 1.17418 0.82448 0.86420 0.78406 1.90912 1.71400 1.27352 1.52142 1.23778 0.94018 0.96458 1.06530 1.74029 1.26871 0.94109 1.00740 1.73889 1.05683 1.21381 1.14769 1.21940 0.86287 0.86557 0.86341 1.84671 1.71375 1.31530 1.37617 1.68323 1.42557 0.99637 1.15361 1.19870 0.85875 0.87123 0.84068 1.84618 1.77957 1.25920 1.37961 1.21586 0.92871 0.86803 0.98254 0.94147 0.79642 0.95183 0.95574 0.90593 0.89966 0.92778 0.87208 0.88928 0.85423 0.68624 0.69143 0.92042 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.83 13.06 21.65 0.28 -61.54 16 2 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 3 Si 0.97 47.14 29.55 68.60 2.03 49.17 16 4 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 5 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.24 -13.88 9.99 84.03 0.84 -13.04 16 8 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 9 N -0.75 -39.00 5.38 -343.45 -1.85 -40.85 16 10 C 0.16 6.21 5.65 86.38 0.49 6.70 16 11 C -0.10 -3.03 2.38 -10.72 -0.03 -3.05 16 12 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 13 C -0.11 -2.30 5.16 30.62 0.16 -2.14 16 14 C -0.13 -2.25 6.10 30.82 0.19 -2.07 16 15 C 0.08 1.54 5.89 86.51 0.51 2.05 16 16 N -0.58 -16.09 2.97 -821.73 -2.44 -18.52 16 17 C 0.57 17.15 7.63 86.72 0.66 17.82 16 18 O -0.54 -20.54 14.75 16.32 0.24 -20.30 16 19 C -0.06 -1.34 6.67 42.05 0.28 -1.06 16 20 N -0.10 -2.02 7.50 -48.10 -0.36 -2.38 16 21 N -0.29 -5.51 11.60 -174.23 -2.02 -7.53 16 22 C 0.49 8.39 8.81 180.33 1.59 9.98 16 23 O -0.44 -4.81 13.63 -85.72 -1.17 -5.97 16 24 N -0.51 -10.34 10.57 -424.99 -4.49 -14.83 16 25 C 0.43 9.55 7.84 85.15 0.67 10.22 16 26 O -0.45 -10.19 11.79 -65.38 -0.77 -10.97 16 27 C 0.13 4.17 5.53 86.36 0.48 4.64 16 28 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 29 H 0.37 21.20 6.89 -92.71 -0.64 20.56 16 30 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.13 2.39 4.12 -90.68 -0.37 2.01 16 38 H 0.45 -0.36 9.06 -74.06 -0.67 -1.03 16 39 H 0.44 6.17 9.06 -74.06 -0.67 5.50 16 40 H 0.06 2.60 6.21 -2.39 -0.01 2.58 16 41 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -78.66 344.02 -5.46 -84.12 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: -1.22 Total: 23.75 kcal Atomic # 6 Polarization: 19.55 SS G_CDS: 6.30 Total: 25.85 kcal Atomic # 7 Polarization: -134.78 SS G_CDS: -10.88 Total: -145.65 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -1.70 Total: -37.24 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -78.66 -5.46 -84.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690412858.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.244 kcal (2) G-P(sol) polarization free energy of solvation -78.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds