Wall clock time and date at job start Tue Mar 31 2020 04:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42897 * 114.00461 * 2 1 4 4 C 1.50692 * 109.47513 * 180.02562 * 3 2 1 5 5 C 1.35310 * 126.66809 * 90.00303 * 4 3 2 6 6 C 1.42276 * 103.92527 * 179.97438 * 5 4 3 7 7 C 1.48329 * 126.94089 * 180.02562 * 6 5 4 8 8 O 1.21499 * 119.99842 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00303 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00490 * 180.02562 * 9 7 6 11 11 H 1.09002 * 110.88796 * 34.29236 * 10 9 7 12 12 C 1.54909 * 111.00270 * 270.41740 * 10 9 7 13 13 N 1.47420 * 104.83377 * 278.93158 * 12 10 9 14 14 C 1.36937 * 125.64809 * 155.83285 * 13 12 10 15 15 H 1.07998 * 119.99844 * 180.02562 * 14 13 12 16 16 C 1.38814 * 120.00491 * 0.02971 * 14 13 12 17 17 N 1.31624 * 119.99531 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00263 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47350 * 60.00337 * 18 16 14 20 20 H 1.48509 * 109.46988 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47485 * 299.99941 * 18 16 14 22 22 C 1.47019 * 108.70392 * 335.87504 * 13 12 10 23 23 C 1.54429 * 107.27927 * 1.05579 * 22 13 12 24 24 C 1.53004 * 110.72616 * 263.84790 * 23 22 13 25 25 C 1.53002 * 110.75977 * 140.54391 * 23 22 13 26 26 N 1.30979 * 106.12156 * 0.02562 * 6 5 4 27 27 O 1.20913 * 111.43938 * 359.97438 * 26 6 5 28 28 H 1.08998 * 109.47388 * 299.99665 * 1 2 3 29 29 H 1.08999 * 109.47216 * 59.99931 * 1 2 3 30 30 H 1.09008 * 109.47120 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46728 * 59.99938 * 3 2 1 32 32 H 1.09000 * 109.46898 * 300.00574 * 3 2 1 33 33 H 1.08007 * 128.04133 * 359.97438 * 5 4 3 34 34 H 0.97004 * 119.99521 * 0.02562 * 9 7 6 35 35 H 1.09001 * 110.36698 * 37.77060 * 12 10 9 36 36 H 1.09002 * 110.36560 * 160.09168 * 12 10 9 37 37 H 0.96992 * 119.99945 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.88799 * 120.47595 * 22 13 12 39 39 H 1.08999 * 109.88154 * 241.48708 * 22 13 12 40 40 H 1.08992 * 109.46992 * 173.46649 * 24 23 22 41 41 H 1.09001 * 109.47152 * 293.47138 * 24 23 22 42 42 H 1.09002 * 109.46809 * 53.46953 * 24 23 22 43 43 H 1.09003 * 109.47123 * 306.51435 * 25 23 22 44 44 H 1.09005 * 109.46958 * 66.50989 * 25 23 22 45 45 H 1.08996 * 109.47373 * 186.50899 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.3175 1.1228 -1.0863 6 6 5.6259 1.0197 -0.5368 7 6 6.9021 0.9195 -1.2861 8 8 6.8948 0.9200 -2.5011 9 7 8.0696 0.8269 -0.6193 10 6 9.3301 0.7285 -1.3592 11 1 9.2859 1.3086 -2.2810 12 6 9.6891 -0.7500 -1.6504 13 7 10.3002 -1.2427 -0.4026 14 6 10.3527 -2.5512 -0.0021 15 1 10.8245 -2.8108 0.9340 16 6 9.7996 -3.5439 -0.7993 17 7 9.2242 -3.2273 -1.9400 18 14 9.8718 -5.3287 -0.2533 19 1 9.1676 -5.4780 1.0455 20 1 9.2148 -6.1853 -1.2732 21 1 11.2896 -5.7420 -0.0980 22 6 10.8432 -0.0966 0.3410 23 6 10.5279 1.1733 -0.4791 24 6 11.7231 1.5662 -1.3499 25 6 10.1243 2.3270 0.4413 26 7 5.4758 1.0310 0.7643 27 8 4.3107 1.1231 1.0740 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8462 0.8900 32 1 1.6886 1.8463 -0.8899 33 1 4.0332 1.1452 -2.1280 34 1 8.0752 0.8254 0.3508 35 1 8.7896 -1.3200 -1.8831 36 1 10.4021 -0.8124 -2.4725 37 1 8.8373 -3.9208 -2.4969 38 1 10.3697 -0.0322 1.3207 39 1 11.9214 -0.2073 0.4572 40 1 11.4407 2.3916 -2.0033 41 1 12.5515 1.8747 -0.7121 42 1 12.0284 0.7122 -1.9544 43 1 9.3102 2.0057 1.0910 44 1 10.9793 2.6228 1.0494 45 1 9.7961 3.1743 -0.1606 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977250607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:40:40 Heat of formation + Delta-G solvation = 16.087354 kcal Electronic energy + Delta-G solvation = -28100.686323 eV Core-core repulsion = 24123.156329 eV Total energy + Delta-G solvation = -3977.529994 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.08480 -39.68835 -38.28981 -37.88640 -34.01012 -33.84213 -33.22622 -32.51316 -30.68026 -28.26109 -28.02388 -26.92149 -25.92031 -25.60249 -24.70132 -23.13831 -22.50626 -20.43263 -19.66823 -18.76607 -17.94518 -17.77858 -16.79217 -16.57856 -16.56305 -16.19312 -15.83450 -15.20125 -14.70775 -14.35273 -14.05926 -13.85184 -13.77697 -13.64361 -13.21162 -13.16340 -12.72902 -12.52868 -12.19621 -11.91676 -11.87877 -11.75142 -11.57700 -11.29267 -11.15385 -10.99839 -10.73879 -10.45040 -10.36471 -10.22329 -10.15950 -9.99061 -9.85365 -9.74822 -9.70798 -9.66334 -8.66648 -8.41552 -6.78896 -5.60153 -3.03042 1.09809 1.62311 2.72637 3.24875 3.43371 3.47374 3.49230 3.54288 3.68002 4.07792 4.42913 4.51929 4.66867 4.85608 4.94652 4.97244 4.99324 5.03622 5.24510 5.29445 5.33608 5.34817 5.39696 5.55210 5.63509 5.79525 5.81426 5.89507 6.03546 6.10269 6.18374 6.27782 6.39342 6.50439 6.60168 6.63892 6.68876 6.73024 6.96227 7.46724 7.64330 7.79271 7.91755 8.07493 8.40808 8.51886 9.24832 9.86428 10.50237 11.42833 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010834 B = 0.003914 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.798244 B = 7152.014543 C = 8879.705598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.384 6.384 3 C 0.148 3.852 4 C -0.049 4.049 5 C -0.152 4.152 6 C -0.017 4.017 7 C 0.596 3.404 8 O -0.526 6.526 9 N -0.682 5.682 10 C 0.122 3.878 11 H 0.090 0.910 12 C 0.146 3.854 13 N -0.601 5.601 14 C -0.226 4.226 15 H 0.076 0.924 16 C -0.009 4.009 17 N -0.918 5.918 18 Si 0.913 3.087 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.286 1.286 22 C 0.142 3.858 23 C -0.087 4.087 24 C -0.128 4.128 25 C -0.132 4.132 26 N -0.322 5.322 27 O 0.129 5.871 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.182 0.818 34 H 0.403 0.597 35 H 0.113 0.887 36 H 0.024 0.976 37 H 0.253 0.747 38 H 0.022 0.978 39 H 0.025 0.975 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.207 14.202 3.875 19.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C 0.070 3.930 4 C -0.112 4.112 5 C -0.174 4.174 6 C -0.177 4.177 7 C 0.379 3.621 8 O -0.401 6.401 9 N -0.332 5.332 10 C 0.017 3.983 11 H 0.108 0.892 12 C 0.020 3.980 13 N -0.327 5.327 14 C -0.354 4.354 15 H 0.094 0.906 16 C -0.204 4.204 17 N -0.566 5.566 18 Si 0.744 3.256 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.016 3.984 23 C -0.088 4.088 24 C -0.185 4.185 25 C -0.190 4.190 26 N -0.022 5.022 27 O 0.051 5.949 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.200 0.800 34 H 0.239 0.761 35 H 0.131 0.869 36 H 0.042 0.958 37 H 0.064 0.936 38 H 0.040 0.960 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.210 13.731 3.896 18.783 hybrid contribution -0.451 -0.871 0.035 0.982 sum -12.661 12.860 3.931 18.470 Atomic orbital electron populations 1.22815 0.79860 1.03494 1.00294 1.88021 1.20406 1.26295 1.95516 1.20610 0.83201 0.86171 1.02982 1.23863 0.94949 1.06448 0.85962 1.22484 0.89893 1.03557 1.01454 1.23688 0.97248 1.06832 0.89898 1.16741 0.81450 0.77566 0.86379 1.90784 1.86264 1.50694 1.12334 1.45672 1.05419 1.71563 1.10577 1.22648 0.80633 1.01193 0.93858 0.89197 1.22322 1.00117 0.87773 0.87748 1.44439 1.66381 1.01634 1.20223 1.18986 1.31720 0.81246 1.03441 0.90590 1.24789 1.00783 0.98092 0.96779 1.69781 1.42931 1.31222 1.12680 0.86180 0.77510 0.84513 0.77441 1.21238 1.21584 1.21222 1.21441 0.96650 0.86466 0.93836 1.21863 0.95223 0.95505 0.96178 1.21683 0.96349 1.01321 0.99175 1.21730 1.00904 0.97419 0.98929 1.74193 0.97033 1.15082 1.15879 1.84780 1.11474 1.65404 1.33217 0.93582 0.93585 0.89054 0.90503 0.89421 0.80017 0.76138 0.86921 0.95844 0.93626 0.96050 0.95688 0.93019 0.92606 0.91661 0.92902 0.92561 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.90 10.69 -35.23 -0.38 -4.28 16 3 C 0.15 1.18 6.49 36.00 0.23 1.42 16 4 C -0.05 -0.59 7.10 -35.36 -0.25 -0.84 16 5 C -0.15 -2.12 10.92 -39.07 -0.43 -2.55 16 6 C -0.02 -0.30 7.19 -82.53 -0.59 -0.89 16 7 C 0.60 11.83 7.85 -12.11 -0.10 11.73 16 8 O -0.53 -11.68 16.64 5.37 0.09 -11.59 16 9 N -0.68 -13.18 4.62 -52.52 -0.24 -13.42 16 10 C 0.12 2.43 2.61 -65.79 -0.17 2.26 16 11 H 0.09 1.78 7.53 -51.93 -0.39 1.39 16 12 C 0.15 3.67 5.27 -2.53 -0.01 3.65 16 13 N -0.60 -15.42 3.39 -170.01 -0.58 -15.99 16 14 C -0.23 -6.39 10.27 -15.06 -0.15 -6.54 16 15 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 16 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 17 N -0.92 -27.74 10.09 55.49 0.56 -27.18 16 18 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 C 0.14 2.94 6.41 -3.01 -0.02 2.92 16 23 C -0.09 -1.49 0.81 -152.62 -0.12 -1.61 16 24 C -0.13 -1.95 8.41 37.16 0.31 -1.64 16 25 C -0.13 -1.86 8.08 37.16 0.30 -1.56 16 26 N -0.32 -5.29 11.84 33.29 0.39 -4.89 16 27 O 0.13 1.81 11.18 17.25 0.19 2.01 16 28 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.18 2.20 8.06 -52.48 -0.42 1.78 16 34 H 0.40 7.46 6.79 -40.82 -0.28 7.18 16 35 H 0.11 3.31 5.87 -51.93 -0.30 3.00 16 36 H 0.02 0.63 7.80 -51.93 -0.41 0.22 16 37 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.02 0.44 7.77 -51.93 -0.40 0.04 16 39 H 0.03 0.52 7.85 -51.93 -0.41 0.11 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 1.12 7.57 -51.93 -0.39 0.73 16 43 H 0.05 0.75 6.42 -51.93 -0.33 0.42 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 372.32 15.07 5.61 5.61 Total: -1.00 -34.19 372.32 -6.05 -40.24 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -6.69 Total: 4.45 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 0.01 Total: 7.31 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: 0.13 Total: -61.48 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.09 Total: -13.86 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.19 -6.05 -40.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977250607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.324 kcal (2) G-P(sol) polarization free energy of solvation -34.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds