Wall clock time and date at job start Tue Mar 31 2020 04:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30176 * 126.80116 * 2 1 4 4 O 1.20921 * 111.60048 * 180.25365 * 3 2 1 5 5 C 1.34040 * 111.57065 * 359.74575 * 4 3 2 6 6 C 1.50702 * 126.78311 * 179.97438 * 5 4 3 7 7 C 1.35455 * 106.44298 * 0.02562 * 5 4 3 8 8 C 1.50703 * 128.00445 * 179.97438 * 7 5 4 9 9 C 1.50694 * 109.47332 * 89.99619 * 8 7 5 10 10 O 1.21283 * 120.00247 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00053 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00015 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.45761 * 35.00443 * 12 11 9 14 14 C 1.53043 * 109.44963 * 275.03571 * 12 11 9 15 15 C 1.53195 * 109.31066 * 301.35179 * 14 12 11 16 16 N 1.46922 * 108.77658 * 305.36274 * 15 14 12 17 17 C 1.36940 * 120.63115 * 233.63222 * 16 15 14 18 18 H 1.07995 * 119.99861 * 27.66186 * 17 16 15 19 19 C 1.38813 * 119.99797 * 207.66273 * 17 16 15 20 20 N 1.31619 * 120.00153 * 17.36978 * 19 17 16 21 21 Si 1.86799 * 119.99979 * 197.37234 * 19 17 16 22 22 H 1.48505 * 109.47059 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47395 * 119.99619 * 21 19 17 24 24 H 1.48493 * 109.47139 * 240.00284 * 21 19 17 25 25 C 1.46932 * 118.73867 * 53.60941 * 16 15 14 26 26 C 1.53042 * 109.45862 * 154.97667 * 12 11 9 27 27 H 1.08998 * 109.49736 * 178.62605 * 26 12 11 28 28 O 1.42904 * 109.49654 * 298.69042 * 26 12 11 29 29 H 1.09006 * 109.47099 * 270.16407 * 1 2 3 30 30 H 1.09007 * 109.47390 * 30.16063 * 1 2 3 31 31 H 1.09000 * 109.47452 * 150.16217 * 1 2 3 32 32 H 1.08997 * 109.47421 * 270.00726 * 6 5 4 33 33 H 1.09008 * 109.46431 * 30.00640 * 6 5 4 34 34 H 1.08999 * 109.47104 * 150.00137 * 6 5 4 35 35 H 1.08997 * 109.47203 * 329.99270 * 8 7 5 36 36 H 1.09001 * 109.46808 * 210.00175 * 8 7 5 37 37 H 0.97004 * 120.00031 * 0.02562 * 11 9 8 38 38 H 1.08994 * 109.49471 * 61.30050 * 14 12 11 39 39 H 1.09000 * 109.49441 * 181.39895 * 14 12 11 40 40 H 1.09003 * 109.58315 * 185.57822 * 15 14 12 41 41 H 1.08993 * 109.70114 * 65.22483 * 15 14 12 42 42 H 0.97001 * 119.99901 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.58638 * 186.59968 * 25 16 15 44 44 H 1.09002 * 109.69500 * 66.25006 * 25 16 15 45 45 H 0.96698 * 114.00258 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0050 5 6 3.6024 -0.6068 -0.0035 6 6 4.9021 -1.3697 -0.0089 7 6 2.3539 -1.1320 0.0026 8 6 1.9590 -2.5864 0.0061 9 6 1.8337 -3.0696 1.4280 10 8 2.0439 -2.3079 2.3481 11 7 1.4871 -4.3479 1.6772 12 6 1.3659 -4.8178 3.0596 13 1 0.9768 -4.0134 3.6837 14 6 2.7424 -5.2434 3.5757 15 6 3.3010 -6.3500 2.6756 16 7 2.3199 -7.4412 2.6033 17 6 2.6835 -8.7272 2.9019 18 1 3.4949 -8.9131 3.5899 19 6 2.0090 -9.7920 2.3203 20 7 1.2709 -9.5967 1.2481 21 14 2.1488 -11.5019 3.0592 22 1 3.0313 -11.4548 4.2526 23 1 0.8010 -11.9799 3.4596 24 1 2.7247 -12.4302 2.0534 25 6 0.9411 -7.1263 2.2051 26 6 0.4089 -6.0110 3.1104 27 1 0.3372 -6.3765 4.1348 28 8 -0.8841 -5.6051 2.6571 29 1 -0.3633 0.0029 1.0277 30 1 -0.3634 0.8886 -0.5163 31 1 -0.3634 -0.8914 -0.5113 32 1 5.2102 -1.5553 -1.0378 33 1 5.6685 -0.7852 0.5001 34 1 4.7675 -2.3203 0.5072 35 1 2.7203 -3.1708 -0.5105 36 1 1.0026 -2.7044 -0.5034 37 1 1.3186 -4.9571 0.9414 38 1 3.4169 -4.3873 3.5611 39 1 2.6491 -5.6164 4.5956 40 1 4.2347 -6.7252 3.0946 41 1 3.4819 -5.9544 1.6762 42 1 0.7999 -10.3408 0.8414 43 1 0.3177 -8.0139 2.3136 44 1 0.9254 -6.7934 1.1673 45 1 -1.5431 -6.3127 2.6631 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090798607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:37:51 Heat of formation + Delta-G solvation = -10.753728 kcal Electronic energy + Delta-G solvation = -28495.241807 eV Core-core repulsion = 24516.547896 eV Total energy + Delta-G solvation = -3978.693910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.89896 -39.87450 -37.97504 -35.39019 -35.24970 -34.08545 -33.66807 -32.08936 -30.39485 -29.33082 -28.84675 -28.63522 -27.12163 -25.34426 -22.71992 -22.19080 -21.75784 -20.60859 -20.03312 -18.76833 -17.78028 -17.20924 -16.88575 -16.79715 -16.56728 -15.42365 -15.19765 -15.03209 -14.42173 -14.13239 -13.89377 -13.71323 -13.65453 -13.52002 -13.41030 -13.18454 -13.04908 -12.79090 -12.60016 -12.41855 -12.27253 -11.96531 -11.88208 -11.70525 -11.12822 -11.07775 -10.97158 -10.89929 -10.47381 -10.26103 -10.06153 -9.96467 -9.72736 -9.58060 -9.38635 -9.07754 -8.72425 -8.58256 -6.85168 -5.95581 -3.38589 1.45589 2.17147 2.88104 3.08426 3.26915 3.36319 3.38066 3.56394 4.15174 4.34791 4.41484 4.54970 4.69277 4.82928 5.09231 5.16576 5.19950 5.27850 5.29880 5.34775 5.38313 5.41977 5.46038 5.58851 5.65819 5.68513 5.69805 5.77823 5.87954 5.88874 5.98105 6.12030 6.19688 6.39060 6.39219 6.64907 6.74340 6.91193 6.99186 7.34612 7.65483 7.84532 8.03919 8.27967 8.28747 8.51270 9.03235 9.66084 10.21324 11.12513 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022444 B = 0.003099 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.251270 B = 9033.009129 C = 9535.429466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.034 3.966 3 N -0.372 5.372 4 O 0.093 5.907 5 C -0.019 4.019 6 C -0.074 4.074 7 C -0.178 4.178 8 C -0.065 4.065 9 C 0.514 3.486 10 O -0.544 6.544 11 N -0.704 5.704 12 C 0.166 3.834 13 H 0.077 0.923 14 C -0.144 4.144 15 C 0.146 3.854 16 N -0.588 5.588 17 C -0.255 4.255 18 H 0.069 0.931 19 C 0.004 3.996 20 N -0.902 5.902 21 Si 0.903 3.097 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.289 1.289 25 C 0.146 3.854 26 C 0.067 3.933 27 H 0.061 0.939 28 O -0.573 6.573 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.404 0.596 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.020 0.980 42 H 0.254 0.746 43 H 0.092 0.908 44 H 0.025 0.975 45 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.515 12.503 -3.824 13.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.125 4.125 3 N -0.079 5.079 4 O 0.030 5.970 5 C -0.082 4.082 6 C -0.132 4.132 7 C -0.182 4.182 8 C -0.105 4.105 9 C 0.299 3.701 10 O -0.422 6.422 11 N -0.356 5.356 12 C 0.062 3.938 13 H 0.095 0.905 14 C -0.185 4.185 15 C 0.020 3.980 16 N -0.312 5.312 17 C -0.384 4.384 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.546 5.546 21 Si 0.732 3.268 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.216 1.216 25 C 0.019 3.981 26 C 0.006 3.994 27 H 0.079 0.921 28 O -0.378 6.378 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.241 0.759 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.064 0.936 43 H 0.110 0.890 44 H 0.043 0.957 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.680 14.805 -3.306 15.185 hybrid contribution -0.480 -2.646 0.075 2.690 sum 0.200 12.159 -3.231 12.582 Atomic orbital electron populations 1.20161 0.86157 1.03399 1.03593 1.23338 0.98783 0.88446 1.01946 1.73787 0.89261 1.23894 1.20945 1.84760 1.21667 1.22448 1.68146 1.24168 0.98123 0.83746 1.02172 1.20350 0.90083 0.98896 1.03835 1.20231 0.91825 0.96017 1.10174 1.19906 1.04537 0.90324 0.95751 1.20334 0.76964 0.82050 0.90748 1.90686 1.50215 1.55025 1.46264 1.45981 1.69190 1.11035 1.09404 1.20787 0.94972 0.95413 0.82670 0.90482 1.22398 0.95736 0.99567 1.00749 1.20910 0.92823 0.88397 0.95871 1.43970 1.03800 1.03464 1.79968 1.19247 1.17494 0.81658 1.20035 0.91363 1.25042 1.00763 0.98059 0.95656 1.70019 1.34633 1.30927 1.19059 0.86221 0.77513 0.84296 0.78742 1.20181 1.21511 1.21632 1.21391 0.87264 0.95687 0.93725 1.22936 0.82157 0.95284 0.99035 0.92128 1.86408 1.20896 1.40733 1.89726 0.90024 0.90685 0.90132 0.89395 0.89774 0.88992 0.87573 0.87622 0.75940 0.91781 0.91207 0.92525 0.96204 0.93558 0.88958 0.95728 0.77735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.39 36.01 0.37 -0.44 16 2 C 0.03 0.47 7.33 -82.10 -0.60 -0.14 16 3 N -0.37 -5.56 12.07 33.42 0.40 -5.16 16 4 O 0.09 1.30 11.20 17.18 0.19 1.49 16 5 C -0.02 -0.23 7.49 -35.30 -0.26 -0.49 16 6 C -0.07 -0.64 10.24 36.01 0.37 -0.27 16 7 C -0.18 -2.31 4.81 -104.42 -0.50 -2.82 16 8 C -0.06 -0.74 5.95 -29.04 -0.17 -0.92 16 9 C 0.51 7.73 7.79 -10.99 -0.09 7.64 16 10 O -0.54 -10.13 15.70 5.55 0.09 -10.04 16 11 N -0.70 -10.82 4.16 -53.76 -0.22 -11.05 16 12 C 0.17 2.83 2.47 -67.89 -0.17 2.66 16 13 H 0.08 1.41 7.58 -51.93 -0.39 1.01 16 14 C -0.14 -2.46 5.77 -26.61 -0.15 -2.61 16 15 C 0.15 2.80 6.25 -3.71 -0.02 2.78 16 16 N -0.59 -13.25 2.99 -172.32 -0.52 -13.76 16 17 C -0.25 -6.46 9.59 -15.06 -0.14 -6.61 16 18 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 19 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 20 N -0.90 -24.04 11.19 55.49 0.62 -23.42 16 21 Si 0.90 20.37 29.59 -169.99 -5.03 15.34 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 C 0.15 3.04 4.64 -3.71 -0.02 3.03 16 26 C 0.07 1.17 3.36 -26.61 -0.09 1.08 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 O -0.57 -9.24 13.21 -35.23 -0.47 -9.71 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.72 7.65 -51.93 -0.40 0.32 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.09 0.82 8.06 -51.93 -0.42 0.40 16 35 H 0.11 0.99 8.08 -51.93 -0.42 0.57 16 36 H 0.11 1.01 7.65 -51.93 -0.40 0.62 16 37 H 0.40 6.07 6.87 -40.82 -0.28 5.79 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 41 H 0.02 0.38 7.74 -51.93 -0.40 -0.02 16 42 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 43 H 0.09 2.18 6.03 -51.93 -0.31 1.87 16 44 H 0.02 0.53 6.64 -51.93 -0.35 0.19 16 45 H 0.38 4.83 9.08 45.56 0.41 5.24 16 LS Contribution 368.92 15.07 5.56 5.56 Total: -1.00 -31.75 368.92 -6.81 -38.56 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -5.87 Total: 9.27 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -1.57 Total: 2.91 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.28 Total: -53.39 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.19 Total: -18.26 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.75 -6.81 -38.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090798607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.804 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds