Wall clock time and date at job start Tue Mar 31 2020 04:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30176 * 126.80116 * 2 1 4 4 O 1.20921 * 111.60048 * 180.25365 * 3 2 1 5 5 C 1.34040 * 111.57065 * 359.74575 * 4 3 2 6 6 C 1.50702 * 126.78311 * 179.97438 * 5 4 3 7 7 C 1.35455 * 106.44298 * 0.02562 * 5 4 3 8 8 C 1.50703 * 128.00445 * 179.97438 * 7 5 4 9 9 C 1.50694 * 109.47332 * 89.99619 * 8 7 5 10 10 O 1.21283 * 120.00247 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00053 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00015 * 179.97438 * 11 9 8 13 13 H 1.08997 * 109.45761 * 35.00443 * 12 11 9 14 14 C 1.53043 * 109.44963 * 275.03571 * 12 11 9 15 15 C 1.53195 * 109.31066 * 301.35179 * 14 12 11 16 16 N 1.46922 * 108.77658 * 305.36274 * 15 14 12 17 17 C 1.36940 * 120.63115 * 233.63222 * 16 15 14 18 18 H 1.07995 * 119.99861 * 27.66186 * 17 16 15 19 19 C 1.38813 * 119.99797 * 207.66273 * 17 16 15 20 20 N 1.31619 * 120.00153 * 17.36978 * 19 17 16 21 21 Si 1.86799 * 119.99979 * 197.37234 * 19 17 16 22 22 H 1.48505 * 109.47059 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47395 * 119.99619 * 21 19 17 24 24 H 1.48493 * 109.47139 * 240.00284 * 21 19 17 25 25 C 1.46932 * 118.73867 * 53.60941 * 16 15 14 26 26 C 1.53042 * 109.45862 * 154.97667 * 12 11 9 27 27 H 1.08998 * 109.49736 * 178.62605 * 26 12 11 28 28 O 1.42904 * 109.49654 * 298.69042 * 26 12 11 29 29 H 1.09006 * 109.47099 * 270.16407 * 1 2 3 30 30 H 1.09007 * 109.47390 * 30.16063 * 1 2 3 31 31 H 1.09000 * 109.47452 * 150.16217 * 1 2 3 32 32 H 1.08997 * 109.47421 * 270.00726 * 6 5 4 33 33 H 1.09008 * 109.46431 * 30.00640 * 6 5 4 34 34 H 1.08999 * 109.47104 * 150.00137 * 6 5 4 35 35 H 1.08997 * 109.47203 * 329.99270 * 8 7 5 36 36 H 1.09001 * 109.46808 * 210.00175 * 8 7 5 37 37 H 0.97004 * 120.00031 * 0.02562 * 11 9 8 38 38 H 1.08994 * 109.49471 * 61.30050 * 14 12 11 39 39 H 1.09000 * 109.49441 * 181.39895 * 14 12 11 40 40 H 1.09003 * 109.58315 * 185.57822 * 15 14 12 41 41 H 1.08993 * 109.70114 * 65.22483 * 15 14 12 42 42 H 0.97001 * 119.99901 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.58638 * 186.59968 * 25 16 15 44 44 H 1.09002 * 109.69500 * 66.25006 * 25 16 15 45 45 H 0.96698 * 114.00258 * 180.02562 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0050 5 6 3.6024 -0.6068 -0.0035 6 6 4.9021 -1.3697 -0.0089 7 6 2.3539 -1.1320 0.0026 8 6 1.9590 -2.5864 0.0061 9 6 1.8337 -3.0696 1.4280 10 8 2.0439 -2.3079 2.3481 11 7 1.4871 -4.3479 1.6772 12 6 1.3659 -4.8178 3.0596 13 1 0.9768 -4.0134 3.6837 14 6 2.7424 -5.2434 3.5757 15 6 3.3010 -6.3500 2.6756 16 7 2.3199 -7.4412 2.6033 17 6 2.6835 -8.7272 2.9019 18 1 3.4949 -8.9131 3.5899 19 6 2.0090 -9.7920 2.3203 20 7 1.2709 -9.5967 1.2481 21 14 2.1488 -11.5019 3.0592 22 1 3.0313 -11.4548 4.2526 23 1 0.8010 -11.9799 3.4596 24 1 2.7247 -12.4302 2.0534 25 6 0.9411 -7.1263 2.2051 26 6 0.4089 -6.0110 3.1104 27 1 0.3372 -6.3765 4.1348 28 8 -0.8841 -5.6051 2.6571 29 1 -0.3633 0.0029 1.0277 30 1 -0.3634 0.8886 -0.5163 31 1 -0.3634 -0.8914 -0.5113 32 1 5.2102 -1.5553 -1.0378 33 1 5.6685 -0.7852 0.5001 34 1 4.7675 -2.3203 0.5072 35 1 2.7203 -3.1708 -0.5105 36 1 1.0026 -2.7044 -0.5034 37 1 1.3186 -4.9571 0.9414 38 1 3.4169 -4.3873 3.5611 39 1 2.6491 -5.6164 4.5956 40 1 4.2347 -6.7252 3.0946 41 1 3.4819 -5.9544 1.6762 42 1 0.7999 -10.3408 0.8414 43 1 0.3177 -8.0139 2.3136 44 1 0.9254 -6.7934 1.1673 45 1 -1.5431 -6.3127 2.6631 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090798607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:37:50 Heat of formation + Delta-G solvation = -33.060114 kcal Electronic energy + Delta-G solvation = -28496.209084 eV Core-core repulsion = 24516.547896 eV Total energy + Delta-G solvation = -3979.661188 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.88815 -41.18484 -39.37114 -36.82651 -36.30563 -35.56832 -34.57704 -33.69180 -31.75694 -30.69712 -30.15411 -29.57222 -28.03776 -27.06623 -24.16724 -23.56113 -23.19376 -21.73833 -21.00853 -20.22614 -18.89145 -18.74077 -18.08933 -18.00380 -17.88689 -16.80402 -16.67493 -16.35499 -15.78268 -15.48682 -15.35351 -15.04519 -14.86967 -14.58455 -14.42752 -14.30541 -13.90236 -13.85960 -13.81765 -13.49906 -13.41284 -13.26974 -13.11866 -12.91198 -12.81438 -12.67135 -12.64195 -12.11457 -11.94701 -11.89822 -11.79586 -11.24066 -11.07587 -10.90551 -10.71167 -10.56241 -10.04723 -9.96140 -8.67769 -7.87993 -5.32339 0.50732 1.17853 1.47607 1.52471 1.60519 1.71750 2.18527 2.39289 2.51883 3.16814 3.23680 3.29533 3.54926 3.70029 3.78190 3.87745 3.99036 4.12698 4.18437 4.30043 4.36693 4.39621 4.49716 4.50212 4.59445 4.64611 4.69786 4.73996 4.77843 4.82953 4.90504 4.94935 4.99647 5.12824 5.14197 5.20359 5.28324 5.36412 5.59831 5.63184 5.69015 6.37569 6.63699 6.84782 7.15328 7.31399 7.32138 7.83575 8.34205 9.17458 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022444 B = 0.003099 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.251270 B = 9033.009129 C = 9535.429466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.022 3.978 3 N -0.401 5.401 4 O 0.080 5.920 5 C -0.017 4.017 6 C -0.074 4.074 7 C -0.197 4.197 8 C -0.056 4.056 9 C 0.516 3.484 10 O -0.581 6.581 11 N -0.701 5.701 12 C 0.170 3.830 13 H 0.068 0.932 14 C -0.131 4.131 15 C 0.148 3.852 16 N -0.603 5.603 17 C -0.263 4.263 18 H 0.065 0.935 19 C -0.041 4.041 20 N -0.926 5.926 21 Si 0.959 3.041 22 H -0.271 1.271 23 H -0.291 1.291 24 H -0.294 1.294 25 C 0.158 3.842 26 C 0.084 3.916 27 H 0.056 0.944 28 O -0.573 6.573 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.408 0.592 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.026 0.974 42 H 0.251 0.749 43 H 0.063 0.937 44 H 0.018 0.982 45 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.800 12.444 -4.238 13.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.136 4.136 3 N -0.111 5.111 4 O 0.019 5.981 5 C -0.080 4.080 6 C -0.131 4.131 7 C -0.202 4.202 8 C -0.096 4.096 9 C 0.304 3.696 10 O -0.461 6.461 11 N -0.353 5.353 12 C 0.065 3.935 13 H 0.086 0.914 14 C -0.171 4.171 15 C 0.023 3.977 16 N -0.327 5.327 17 C -0.393 4.393 18 H 0.083 0.917 19 C -0.237 4.237 20 N -0.572 5.572 21 Si 0.788 3.212 22 H -0.196 1.196 23 H -0.217 1.217 24 H -0.221 1.221 25 C 0.031 3.969 26 C 0.023 3.977 27 H 0.074 0.926 28 O -0.380 6.380 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.133 0.867 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.245 0.755 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.060 0.940 43 H 0.081 0.919 44 H 0.035 0.965 45 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.974 14.750 -3.723 15.244 hybrid contribution -0.552 -2.599 0.206 2.664 sum 0.423 12.152 -3.516 12.657 Atomic orbital electron populations 1.20270 0.84588 1.04930 1.03543 1.23882 1.00071 0.88582 1.01110 1.73772 0.89797 1.24938 1.22624 1.84719 1.21459 1.23442 1.68493 1.24867 0.99507 0.83248 1.00414 1.20541 0.88605 0.98309 1.05672 1.20478 0.92019 0.96551 1.11105 1.19944 1.06659 0.89586 0.93410 1.20901 0.75600 0.81246 0.91892 1.90676 1.51813 1.55808 1.47826 1.45935 1.69202 1.11415 1.08703 1.20634 0.94591 0.94640 0.83652 0.91383 1.22245 0.95819 0.98898 1.00169 1.20969 0.92191 0.87989 0.96588 1.44166 1.05079 1.03430 1.80061 1.19487 1.17173 0.83101 1.19566 0.91688 1.25635 1.01086 1.00847 0.96139 1.70129 1.35560 1.31413 1.20064 0.85336 0.77168 0.80696 0.77973 1.19555 1.21727 1.22146 1.21199 0.86299 0.95397 0.93970 1.22593 0.82894 0.94382 0.97860 0.92561 1.86387 1.20549 1.41491 1.89523 0.90702 0.89674 0.88171 0.86731 0.88708 0.89070 0.84947 0.85388 0.75534 0.90987 0.91249 0.92707 0.95572 0.93995 0.91868 0.96452 0.75994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.54 10.39 71.24 0.74 -0.80 16 2 C 0.02 0.59 7.33 43.58 0.32 0.91 16 3 N -0.40 -11.92 12.07 -49.57 -0.60 -12.52 16 4 O 0.08 2.18 11.20 71.64 0.80 2.99 16 5 C -0.02 -0.39 7.49 25.04 0.19 -0.20 16 6 C -0.07 -1.10 10.24 71.24 0.73 -0.37 16 7 C -0.20 -4.79 4.81 -19.73 -0.10 -4.89 16 8 C -0.06 -1.14 5.95 29.10 0.17 -0.97 16 9 C 0.52 14.55 7.79 87.65 0.68 15.23 16 10 O -0.58 -20.94 15.70 -3.04 -0.05 -20.98 16 11 N -0.70 -20.25 4.16 -442.40 -1.84 -22.09 16 12 C 0.17 5.55 2.47 45.02 0.11 5.66 16 13 H 0.07 2.40 7.58 -2.39 -0.02 2.38 16 14 C -0.13 -4.27 5.77 30.67 0.18 -4.10 16 15 C 0.15 5.48 6.25 86.36 0.54 6.02 16 16 N -0.60 -26.75 2.99 -699.10 -2.09 -28.84 16 17 C -0.26 -13.22 9.59 84.03 0.81 -12.42 16 18 H 0.07 3.25 7.89 -2.91 -0.02 3.22 16 19 C -0.04 -2.09 4.91 84.86 0.42 -1.67 16 20 N -0.93 -49.39 11.19 21.65 0.24 -49.15 16 21 Si 0.96 41.74 29.59 68.60 2.03 43.77 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 23 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 24 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 25 C 0.16 6.49 4.64 86.36 0.40 6.89 16 26 C 0.08 2.86 3.36 30.67 0.10 2.96 16 27 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 28 O -0.57 -17.58 13.21 -148.98 -1.97 -19.55 16 29 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.10 1.58 7.65 -2.39 -0.02 1.56 16 32 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.09 1.40 8.06 -2.39 -0.02 1.38 16 35 H 0.13 2.00 8.08 -2.39 -0.02 1.98 16 36 H 0.13 2.04 7.65 -2.39 -0.02 2.02 16 37 H 0.41 11.42 6.87 -92.71 -0.64 10.78 16 38 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 41 H 0.03 0.95 7.74 -2.39 -0.02 0.93 16 42 H 0.25 13.05 8.31 -92.71 -0.77 12.28 16 43 H 0.06 2.99 6.03 -2.39 -0.01 2.98 16 44 H 0.02 0.74 6.64 -2.39 -0.02 0.73 16 45 H 0.39 9.46 9.08 -74.06 -0.67 8.79 16 Total: -1.00 -67.68 368.92 1.54 -66.14 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: -0.28 Total: 27.98 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 5.29 Total: 12.25 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -4.29 Total: -112.60 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -1.21 Total: -37.55 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -67.68 1.54 -66.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090798607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.083 kcal (2) G-P(sol) polarization free energy of solvation -67.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds