Wall clock time and date at job start Tue Mar 31 2020 04:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30178 * 126.80066 * 2 1 4 4 O 1.20918 * 111.60163 * 179.97438 * 3 2 1 5 5 C 1.34037 * 111.57071 * 359.75826 * 4 3 2 6 6 C 1.50703 * 126.77893 * 180.29155 * 5 4 3 7 7 C 1.35448 * 106.44494 * 0.38713 * 5 4 3 8 8 C 1.50703 * 128.00645 * 179.91665 * 7 5 4 9 9 C 1.50707 * 109.46647 * 269.67253 * 8 7 5 10 10 O 1.21284 * 119.99818 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99653 * 179.97438 * 9 8 7 12 12 C 1.46503 * 119.99433 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46728 * 180.02562 * 12 11 9 14 14 O 1.42896 * 110.88867 * 303.87903 * 13 12 11 15 15 C 1.55157 * 111.00499 * 180.02562 * 13 12 11 16 16 C 1.54326 * 102.94369 * 206.42418 * 15 13 12 17 17 N 1.47018 * 107.27077 * 22.19167 * 16 15 13 18 18 C 1.36933 * 125.64791 * 181.02164 * 17 16 15 19 19 H 1.08003 * 120.00191 * 169.69505 * 18 17 16 20 20 C 1.38815 * 120.00279 * 349.70283 * 18 17 16 21 21 N 1.31618 * 119.99973 * 152.99416 * 20 18 17 22 22 Si 1.86804 * 119.99596 * 332.99374 * 20 18 17 23 23 H 1.48502 * 109.47022 * 85.20223 * 22 20 18 24 24 H 1.48492 * 109.46735 * 205.20234 * 22 20 18 25 25 H 1.48498 * 109.47060 * 325.20175 * 22 20 18 26 26 C 1.47432 * 108.70453 * 1.28826 * 17 16 15 27 27 H 1.08998 * 109.47015 * 270.02410 * 1 2 3 28 28 H 1.09000 * 109.47664 * 30.02395 * 1 2 3 29 29 H 1.09003 * 109.47447 * 150.02418 * 1 2 3 30 30 H 1.09004 * 109.46664 * 270.11289 * 6 5 4 31 31 H 1.08999 * 109.47175 * 30.10946 * 6 5 4 32 32 H 1.08995 * 109.47243 * 150.11617 * 6 5 4 33 33 H 1.08998 * 109.47231 * 149.67867 * 8 7 5 34 34 H 1.09000 * 109.47285 * 29.66896 * 8 7 5 35 35 H 0.96996 * 119.99948 * 359.97438 * 11 9 8 36 36 H 1.08995 * 109.47208 * 59.99948 * 12 11 9 37 37 H 1.09000 * 109.47066 * 299.99740 * 12 11 9 38 38 H 0.96704 * 113.99761 * 56.11708 * 14 13 12 39 39 H 1.08996 * 110.71868 * 88.05966 * 15 13 12 40 40 H 1.09006 * 110.71967 * 324.78766 * 15 13 12 41 41 H 1.08994 * 109.88143 * 262.77454 * 16 15 13 42 42 H 1.09004 * 109.88181 * 141.60811 * 16 15 13 43 43 H 0.96998 * 120.00029 * 5.04598 * 21 20 18 44 44 H 1.08998 * 110.36548 * 94.48169 * 26 17 16 45 45 H 1.08998 * 110.36594 * 216.80377 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 0.0005 5 6 3.6024 -0.6067 0.0062 6 6 4.9021 -1.3695 0.0147 7 6 2.3539 -1.1320 0.0006 8 6 1.9591 -2.5864 0.0017 9 6 1.8273 -3.0721 -1.4188 10 8 2.0333 -2.3120 -2.3412 11 7 1.4807 -4.3512 -1.6641 12 6 1.3531 -4.8235 -3.0450 13 6 0.9521 -6.3001 -3.0440 14 8 1.8880 -7.0817 -2.2988 15 6 0.8075 -6.8382 -4.4920 16 6 -0.2006 -7.9956 -4.3316 17 7 -0.9570 -7.7476 -3.0956 18 6 -1.9371 -8.5554 -2.5840 19 1 -2.3188 -8.3779 -1.5894 20 6 -2.4402 -9.6026 -3.3438 21 7 -2.9443 -10.6636 -2.7499 22 14 -2.4019 -9.5059 -5.2089 23 1 -1.0822 -9.9758 -5.7019 24 1 -3.4748 -10.3648 -5.7711 25 1 -2.6180 -8.1003 -5.6362 26 6 -0.4898 -6.4817 -2.5014 27 1 -0.3633 0.0004 1.0277 28 1 -0.3634 0.8897 -0.5142 29 1 -0.3634 -0.8902 -0.5135 30 1 5.2209 -1.5555 -1.0110 31 1 5.6632 -0.7847 0.5313 32 1 4.7623 -2.3199 0.5296 33 1 1.0050 -2.7035 0.5157 34 1 2.7229 -3.1698 0.5159 35 1 1.3163 -4.9592 -0.9264 36 1 2.3072 -4.7061 -3.5588 37 1 0.5893 -4.2404 -3.5594 38 1 2.0121 -6.7832 -1.3874 39 1 1.7632 -7.2078 -4.8633 40 1 0.4082 -6.0676 -5.1517 41 1 0.3322 -8.9435 -4.2563 42 1 -0.8798 -8.0165 -5.1840 43 1 -3.0315 -10.6832 -1.7841 44 1 -1.1248 -5.6555 -2.8212 45 1 -0.4792 -6.5543 -1.4139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672045246.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:37:42 Heat of formation + Delta-G solvation = -28.069480 kcal Electronic energy + Delta-G solvation = -27673.511401 eV Core-core repulsion = 23694.066623 eV Total energy + Delta-G solvation = -3979.444778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.91093 -41.12706 -39.98207 -37.01364 -36.28494 -35.25084 -34.60004 -34.36529 -31.92713 -31.04150 -29.90760 -29.59386 -28.19349 -27.15083 -24.92564 -23.13361 -22.64698 -21.52822 -21.47687 -21.01182 -19.53900 -18.94210 -18.51836 -17.93350 -17.60751 -17.17140 -16.61820 -16.43812 -16.23879 -15.54861 -15.34910 -15.15783 -14.95915 -14.87121 -14.57284 -14.35433 -14.29852 -13.94500 -13.85519 -13.61249 -13.46337 -13.39810 -13.12330 -13.09810 -12.90040 -12.84124 -12.68175 -12.20883 -11.91251 -11.86973 -11.63426 -11.25887 -11.15688 -10.96349 -10.75111 -10.55472 -10.16671 -10.08215 -9.15328 -8.62974 -5.41008 0.49897 1.15371 1.40187 1.50827 1.62296 1.69833 2.13249 2.27806 2.52092 2.99870 3.11220 3.21695 3.32439 3.51566 3.53052 3.72226 3.74754 3.82474 3.90376 4.06240 4.30154 4.36199 4.40214 4.46128 4.60048 4.60717 4.62597 4.68727 4.70672 4.74790 4.78665 4.79909 4.83701 4.89489 4.91480 5.06125 5.12494 5.18616 5.28012 5.32805 5.57732 6.11308 6.46457 6.76792 6.83798 7.21414 7.31321 7.49083 8.12847 8.85884 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.025403 B = 0.002564 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.988236 B =10916.018713 C =11258.264028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.020 3.980 3 N -0.405 5.405 4 O 0.077 5.923 5 C -0.018 4.018 6 C -0.075 4.075 7 C -0.199 4.199 8 C -0.056 4.056 9 C 0.518 3.482 10 O -0.577 6.577 11 N -0.717 5.717 12 C 0.119 3.881 13 C 0.123 3.877 14 O -0.550 6.550 15 C -0.109 4.109 16 C 0.109 3.891 17 N -0.625 5.625 18 C -0.317 4.317 19 H 0.049 0.951 20 C -0.078 4.078 21 N -0.954 5.954 22 Si 1.108 2.892 23 H -0.274 1.274 24 H -0.307 1.307 25 H -0.274 1.274 26 C 0.110 3.890 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.115 0.885 33 H 0.132 0.868 34 H 0.145 0.855 35 H 0.413 0.587 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.385 0.615 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.022 0.978 42 H 0.025 0.975 43 H 0.249 0.751 44 H 0.037 0.963 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.960 18.997 7.211 25.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.139 4.139 3 N -0.114 5.114 4 O 0.016 5.984 5 C -0.081 4.081 6 C -0.132 4.132 7 C -0.204 4.204 8 C -0.096 4.096 9 C 0.306 3.694 10 O -0.456 6.456 11 N -0.371 5.371 12 C -0.006 4.006 13 C 0.081 3.919 14 O -0.357 6.357 15 C -0.147 4.147 16 C -0.015 4.015 17 N -0.352 5.352 18 C -0.446 4.446 19 H 0.067 0.933 20 C -0.272 4.272 21 N -0.598 5.598 22 Si 0.936 3.064 23 H -0.200 1.200 24 H -0.236 1.236 25 H -0.200 1.200 26 C -0.016 4.016 27 H 0.119 0.881 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.118 0.882 32 H 0.134 0.866 33 H 0.150 0.850 34 H 0.163 0.837 35 H 0.250 0.750 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.234 0.766 39 H 0.118 0.882 40 H 0.125 0.875 41 H 0.040 0.960 42 H 0.042 0.958 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.557 19.648 4.672 25.493 hybrid contribution -0.550 -0.103 2.353 2.419 sum 15.007 19.546 7.025 25.624 Atomic orbital electron populations 1.20262 0.84728 1.03989 1.04443 1.23919 1.00015 0.88794 1.01166 1.73801 0.89878 1.25169 1.22593 1.84732 1.21417 1.23756 1.68452 1.24951 0.99678 0.83223 1.00288 1.20583 0.88593 0.99213 1.04831 1.20531 0.91740 0.96850 1.11238 1.20012 1.07235 0.89223 0.93133 1.20958 0.75366 0.81132 0.91990 1.90734 1.51188 1.55861 1.47837 1.45817 1.70632 1.11897 1.08758 1.21699 1.02575 0.92161 0.84176 1.22410 0.87592 0.88783 0.93102 1.86617 1.62402 1.58059 1.28608 1.22616 0.99820 0.97674 0.94601 1.21761 0.93114 0.97937 0.88710 1.44759 1.41055 1.23108 1.26267 1.19907 1.15767 1.10657 0.98261 0.93345 1.26956 0.98584 0.91967 1.09716 1.71033 1.52124 1.25821 1.10839 0.83213 0.76160 0.75226 0.71763 1.20034 1.23600 1.20036 1.22461 0.93712 0.87913 0.97494 0.88123 0.90983 0.89623 0.89259 0.88189 0.86628 0.85042 0.83719 0.74988 0.90070 0.90777 0.76594 0.88159 0.87528 0.96009 0.95791 0.94135 0.94511 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 10.39 71.23 0.74 -0.52 16 2 C 0.02 0.44 7.33 43.58 0.32 0.76 16 3 N -0.40 -10.53 12.07 -49.57 -0.60 -11.13 16 4 O 0.08 1.80 11.20 71.67 0.80 2.60 16 5 C -0.02 -0.31 7.49 25.04 0.19 -0.12 16 6 C -0.08 -0.62 10.30 71.24 0.73 0.11 16 7 C -0.20 -3.57 4.81 -19.74 -0.10 -3.66 16 8 C -0.06 -0.61 6.03 29.11 0.18 -0.44 16 9 C 0.52 9.26 7.82 87.66 0.69 9.94 16 10 O -0.58 -16.06 16.03 -3.04 -0.05 -16.11 16 11 N -0.72 -11.00 5.20 -463.04 -2.41 -13.41 16 12 C 0.12 2.44 4.88 86.38 0.42 2.86 16 13 C 0.12 3.23 0.97 -9.32 -0.01 3.22 16 14 O -0.55 -14.34 13.21 -148.98 -1.97 -16.31 16 15 C -0.11 -3.17 6.15 31.78 0.20 -2.97 16 16 C 0.11 4.53 4.94 86.73 0.43 4.96 16 17 N -0.62 -29.12 3.29 -691.53 -2.27 -31.39 16 18 C -0.32 -18.04 10.43 84.03 0.88 -17.16 16 19 H 0.05 2.93 8.06 -2.91 -0.02 2.91 16 20 C -0.08 -4.62 5.43 84.86 0.46 -4.16 16 21 N -0.95 -61.01 13.70 21.65 0.30 -60.71 16 22 Si 1.11 54.05 24.66 68.60 1.69 55.74 16 23 H -0.27 -12.39 6.76 99.48 0.67 -11.72 16 24 H -0.31 -15.25 7.11 99.48 0.71 -14.54 16 25 H -0.27 -12.30 6.71 99.48 0.67 -11.63 16 26 C 0.11 3.74 6.23 86.93 0.54 4.28 16 27 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.12 0.36 7.43 -2.39 -0.02 0.34 16 33 H 0.13 0.89 8.14 -2.39 -0.02 0.88 16 34 H 0.15 0.51 7.44 -2.39 -0.02 0.49 16 35 H 0.41 4.18 7.28 -92.71 -0.67 3.50 16 36 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.07 1.67 8.07 -2.39 -0.02 1.65 16 38 H 0.38 6.49 7.69 -74.05 -0.57 5.92 16 39 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.11 2.59 8.04 -2.38 -0.02 2.57 16 41 H 0.02 1.00 7.82 -2.39 -0.02 0.98 16 42 H 0.02 1.04 3.76 -2.38 -0.01 1.03 16 43 H 0.25 15.92 8.73 -92.71 -0.81 15.11 16 44 H 0.04 1.24 7.99 -2.39 -0.02 1.22 16 45 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -84.93 368.73 0.83 -84.10 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -0.33 Total: 9.53 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 5.66 Total: -2.92 kcal Atomic # 7 Polarization: -111.66 SS G_CDS: -4.98 Total: -116.64 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -1.21 Total: -29.82 kcal Atomic # 14 Polarization: 54.05 SS G_CDS: 1.69 Total: 55.74 kcal Total: -84.93 0.83 -84.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672045246.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.027 kcal (2) G-P(sol) polarization free energy of solvation -84.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds