Wall clock time and date at job start Tue Mar 31 2020 05:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.47086 * 2 1 4 4 C 1.46908 * 110.99788 * 297.83481 * 3 2 1 5 5 C 1.52999 * 109.47126 * 288.32997 * 4 3 2 6 6 C 1.46900 * 111.00112 * 61.78995 * 3 2 1 7 7 C 1.50702 * 109.46990 * 66.04654 * 6 3 2 8 8 C 1.35123 * 125.61321 * 90.00106 * 7 6 3 9 9 C 1.40363 * 107.11466 * 180.02562 * 8 7 6 10 10 C 1.36541 * 106.70659 * 359.97438 * 9 8 7 11 11 C 1.46661 * 125.98728 * 179.97438 * 10 9 8 12 12 O 1.21688 * 120.00038 * 359.97438 * 11 10 9 13 13 N 1.34782 * 120.00104 * 180.02562 * 11 10 9 14 14 C 1.46488 * 120.00238 * 179.72341 * 13 11 10 15 15 C 1.50699 * 109.47398 * 180.27307 * 14 13 11 16 16 O 1.21294 * 119.99588 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00053 * 180.02562 * 15 14 13 18 18 C 1.37101 * 119.99573 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00186 * 359.97438 * 18 17 15 20 20 C 1.38951 * 119.99593 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00392 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99898 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47083 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47117 * 119.99814 * 22 20 18 25 25 H 1.48493 * 109.47322 * 239.99749 * 22 20 18 26 26 O 1.33933 * 125.61698 * 270.32365 * 7 6 3 27 27 H 1.09002 * 109.47062 * 61.98285 * 1 2 3 28 28 H 1.08998 * 109.46979 * 181.97577 * 1 2 3 29 29 H 1.09001 * 109.47490 * 301.97904 * 1 2 3 30 30 H 1.08993 * 109.47347 * 239.99728 * 2 1 3 31 31 H 1.09002 * 109.47017 * 119.99794 * 2 1 3 32 32 H 1.08996 * 109.46642 * 48.33267 * 4 3 2 33 33 H 1.08998 * 109.46534 * 168.32742 * 4 3 2 34 34 H 1.08998 * 109.47446 * 59.99887 * 5 4 3 35 35 H 1.09003 * 109.46855 * 179.97438 * 5 4 3 36 36 H 1.08998 * 109.46856 * 299.99850 * 5 4 3 37 37 H 1.08996 * 109.47157 * 306.04631 * 6 3 2 38 38 H 1.08998 * 109.47139 * 186.04915 * 6 3 2 39 39 H 1.08002 * 126.44618 * 0.03733 * 8 7 6 40 40 H 1.08006 * 126.64816 * 179.97438 * 9 8 7 41 41 H 0.97006 * 119.99269 * 359.97438 * 13 11 10 42 42 H 1.09004 * 109.47371 * 300.27501 * 14 13 11 43 43 H 1.09002 * 109.47611 * 60.27136 * 14 13 11 44 44 H 0.96992 * 119.99954 * 359.97438 * 17 15 14 45 45 H 0.97000 * 120.00549 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5914 2.0948 -1.2128 5 6 2.3716 1.5636 -2.4170 6 6 1.5840 2.0975 1.2085 7 6 2.2421 1.4845 2.4177 8 6 3.4290 1.8604 2.9429 9 6 3.6688 1.0365 4.0536 10 6 2.6024 0.1894 4.1515 11 6 2.4194 -0.8519 5.1679 12 8 3.2654 -1.0197 6.0264 13 7 1.3146 -1.6239 5.1506 14 6 1.1347 -2.6680 6.1622 15 6 -0.1678 -3.3854 5.9175 16 8 -0.8759 -3.0571 4.9890 17 7 -0.5459 -4.3918 6.7303 18 6 -1.7306 -5.0448 6.5073 19 1 -2.3611 -4.7525 5.6806 20 6 -2.1201 -6.0827 7.3450 21 7 -1.3528 -6.4388 8.3506 22 14 -3.7347 -6.9720 7.0416 23 1 -4.4076 -6.3852 5.8550 24 1 -3.4681 -8.4123 6.7971 25 1 -4.6114 -6.8259 8.2312 26 8 1.7498 0.4735 3.1452 27 1 -0.3633 0.4827 -0.9072 28 1 -0.3633 -1.0270 0.0354 29 1 -0.3634 0.5443 0.8717 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.5251 1.9333 -1.3708 33 1 1.7841 3.1613 -1.0967 34 1 2.1789 0.4970 -2.5330 35 1 2.0534 2.0899 -3.3169 36 1 3.4379 1.7251 -2.2589 37 1 0.5011 2.0196 1.3056 38 1 1.8674 3.1472 1.1335 39 1 4.0722 2.6470 2.5769 40 1 4.5299 1.0666 4.7048 41 1 0.6404 -1.4904 4.4660 42 1 1.9584 -3.3793 6.1007 43 1 1.1192 -2.2149 7.1534 44 1 0.0205 -4.6546 7.4725 45 1 -1.6249 -7.1632 8.9356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588077261.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:40 Heat of formation + Delta-G solvation = -54.255804 kcal Electronic energy + Delta-G solvation = -26903.137686 eV Core-core repulsion = 22922.557385 eV Total energy + Delta-G solvation = -3980.580302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.79484 -39.46700 -38.65280 -38.08490 -34.58930 -33.82526 -33.16507 -32.20667 -31.42884 -31.30946 -29.32094 -27.73519 -25.85374 -24.58103 -24.10149 -22.17864 -21.64893 -20.31466 -19.99921 -19.66611 -18.45066 -17.91569 -16.92130 -16.38084 -16.09345 -15.86233 -15.65373 -15.36849 -15.06025 -14.65052 -14.53181 -14.13453 -13.73704 -13.65270 -13.48156 -13.38009 -13.03380 -13.03244 -12.94195 -12.44644 -12.31572 -12.24627 -12.00640 -11.85889 -11.73836 -11.65712 -11.37954 -11.16193 -10.87136 -10.42645 -10.36308 -10.20266 -10.07211 -9.67146 -9.02088 -8.75641 -8.66961 -8.50113 -8.12615 -6.53668 -3.95710 1.00961 2.22495 2.52710 3.08575 3.20519 3.25223 3.27163 3.32075 3.66444 3.70984 4.09261 4.33005 4.59493 4.69168 4.81423 4.82980 4.86914 4.94503 5.01022 5.02253 5.14412 5.14656 5.16258 5.28065 5.37459 5.56012 5.58512 5.69809 5.72170 5.75630 5.79705 5.87858 5.89584 5.89693 6.02088 6.05898 6.27936 6.50529 6.60033 6.67602 6.84784 7.44255 7.68405 7.89222 8.22914 8.42615 9.02350 9.36390 9.84159 10.63225 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015001 B = 0.002566 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.068374 B =10908.900989 C =12502.354247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.044 3.956 3 N -0.532 5.532 4 C 0.045 3.955 5 C -0.147 4.147 6 C 0.126 3.874 7 C 0.021 3.979 8 C -0.200 4.200 9 C -0.124 4.124 10 C -0.066 4.066 11 C 0.599 3.401 12 O -0.529 6.529 13 N -0.695 5.695 14 C 0.107 3.893 15 C 0.428 3.572 16 O -0.596 6.596 17 N -0.548 5.548 18 C -0.304 4.304 19 H 0.106 0.894 20 C 0.026 3.974 21 N -0.894 5.894 22 Si 0.933 3.067 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.280 1.280 26 O -0.158 6.158 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.107 0.893 39 H 0.155 0.845 40 H 0.160 0.840 41 H 0.416 0.584 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.396 0.604 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.840 17.077 -15.574 24.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.084 4.084 3 N -0.257 5.257 4 C -0.083 4.083 5 C -0.205 4.205 6 C -0.001 4.001 7 C -0.032 4.032 8 C -0.220 4.220 9 C -0.145 4.145 10 C -0.119 4.119 11 C 0.384 3.616 12 O -0.408 6.408 13 N -0.347 5.347 14 C -0.020 4.020 15 C 0.213 3.787 16 O -0.482 6.482 17 N -0.183 5.183 18 C -0.434 4.434 19 H 0.124 0.876 20 C -0.177 4.177 21 N -0.534 5.534 22 Si 0.759 3.241 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 O -0.054 6.054 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.125 0.875 39 H 0.172 0.828 40 H 0.177 0.823 41 H 0.254 0.746 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.230 0.770 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.126 16.799 -15.469 24.239 hybrid contribution -1.447 -0.575 0.190 1.569 sum 6.678 16.224 -15.279 23.265 Atomic orbital electron populations 1.22412 0.97683 1.03372 1.01806 1.22245 0.93382 0.89370 1.03404 1.62329 1.59644 1.02745 1.00955 1.22154 0.98133 0.98215 0.89766 1.21761 1.01100 1.01296 0.96311 1.20634 0.98080 0.97054 0.84353 1.22453 0.95310 0.90272 0.95162 1.21502 0.97585 1.04431 0.98442 1.21917 0.98846 0.95047 0.98672 1.22073 0.93070 1.03108 0.93624 1.16528 0.82256 0.79925 0.82865 1.90866 1.43350 1.69817 1.36758 1.45627 1.22166 1.34200 1.32744 1.21044 0.98175 0.90551 0.92245 1.19687 0.88219 0.84583 0.86206 1.90508 1.55935 1.68465 1.33308 1.41792 1.20603 1.28946 1.26950 1.19779 0.97039 1.12896 1.13661 0.87611 1.25334 0.99699 0.97327 0.95376 1.69619 1.37848 1.29593 1.16339 0.85755 0.80892 0.78890 0.78539 1.19129 1.20587 1.20588 1.84059 1.44231 1.43205 1.33869 0.92459 0.91316 0.92121 0.90181 0.90289 0.93770 0.90772 0.92567 0.92297 0.91825 0.92037 0.87538 0.82751 0.82254 0.74569 0.89375 0.89378 0.76992 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.80 9.28 37.16 0.34 -1.46 16 2 C 0.04 0.42 5.74 -3.82 -0.02 0.40 16 3 N -0.53 -4.53 4.66 -236.07 -1.10 -5.63 16 4 C 0.04 0.29 5.55 -3.82 -0.02 0.27 16 5 C -0.15 -0.90 9.95 37.16 0.37 -0.53 16 6 C 0.13 1.05 5.28 -4.98 -0.03 1.02 16 7 C 0.02 0.23 5.89 -35.42 -0.21 0.02 16 8 C -0.20 -2.13 10.77 -39.89 -0.43 -2.56 16 9 C -0.12 -1.58 10.62 -39.39 -0.42 -1.99 16 10 C -0.07 -0.98 7.13 -36.80 -0.26 -1.24 16 11 C 0.60 10.23 7.79 -12.86 -0.10 10.13 16 12 O -0.53 -10.11 16.86 5.20 0.09 -10.03 16 13 N -0.69 -12.26 5.52 -62.81 -0.35 -12.60 16 14 C 0.11 1.99 6.15 -5.20 -0.03 1.96 16 15 C 0.43 9.83 7.85 -10.99 -0.09 9.75 16 16 O -0.60 -15.35 15.24 5.55 0.08 -15.27 16 17 N -0.55 -13.56 5.29 -10.96 -0.06 -13.62 16 18 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 19 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 21 N -0.89 -23.78 13.05 55.50 0.72 -23.06 16 22 Si 0.93 20.48 29.55 -169.99 -5.02 15.46 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 O -0.16 -2.17 9.71 5.01 0.05 -2.12 16 27 H 0.06 0.46 6.32 -51.93 -0.33 0.13 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.61 6.22 -51.93 -0.32 0.28 16 30 H 0.08 0.71 6.61 -51.93 -0.34 0.37 16 31 H 0.08 0.93 6.69 -51.93 -0.35 0.58 16 32 H 0.04 0.29 5.89 -51.93 -0.31 -0.02 16 33 H 0.07 0.40 7.82 -51.93 -0.41 -0.01 16 34 H 0.06 0.37 6.71 -51.93 -0.35 0.02 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.51 6.02 -51.93 -0.31 0.20 16 38 H 0.11 0.65 7.86 -51.93 -0.41 0.24 16 39 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.16 1.84 8.06 -52.48 -0.42 1.41 16 41 H 0.42 7.45 7.19 -40.82 -0.29 7.16 16 42 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 44 H 0.40 9.39 7.90 -40.82 -0.32 9.06 16 45 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 375.91 15.07 5.66 5.66 Total: -1.00 -31.02 375.91 -7.26 -38.28 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -6.21 Total: 14.97 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -1.13 Total: 7.95 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.78 Total: -54.91 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: 0.22 Total: -27.42 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.02 -7.26 -38.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588077261.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.977 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds