Wall clock time and date at job start Tue Mar 31 2020 05:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47475 * 2 1 4 4 C 1.50704 * 109.47056 * 240.00181 * 2 1 3 5 5 O 1.21285 * 119.99766 * 240.00208 * 4 2 1 6 6 N 1.34777 * 120.00055 * 59.99526 * 4 2 1 7 7 C 1.46493 * 119.99869 * 0.02562 * 6 4 2 8 8 C 1.46503 * 119.99918 * 180.02562 * 6 4 2 9 9 H 1.09007 * 110.88491 * 350.32604 * 8 6 4 10 10 C 1.55161 * 111.00322 * 226.40499 * 8 6 4 11 11 C 1.54323 * 102.94017 * 277.42988 * 10 8 6 12 12 N 1.47293 * 107.30606 * 337.81724 * 11 10 8 13 13 C 1.36940 * 125.79344 * 178.92898 * 12 11 10 14 14 H 1.08001 * 120.00024 * 180.02562 * 13 12 11 15 15 C 1.38811 * 119.99987 * 359.97438 * 13 12 11 16 16 N 1.31618 * 119.99878 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00218 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46666 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47022 * 120.00256 * 17 15 13 20 20 H 1.48503 * 109.47150 * 240.00328 * 17 15 13 21 21 C 1.47423 * 108.55784 * 358.92594 * 12 11 10 22 22 N 1.46500 * 109.47212 * 120.00094 * 2 1 3 23 23 C 1.33879 * 122.76030 * 59.70761 * 22 2 1 24 24 O 1.21227 * 125.40017 * 359.97438 * 23 22 2 25 25 C 1.51317 * 109.20560 * 179.84319 * 23 22 2 26 26 C 1.54228 * 103.55287 * 0.38427 * 25 23 22 27 27 C 1.33870 * 122.76600 * 239.99835 * 22 2 1 28 28 O 1.21235 * 125.39508 * 0.02562 * 27 22 2 29 29 H 1.09004 * 109.47145 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46794 * 299.99930 * 1 2 3 31 31 H 1.09003 * 109.47025 * 59.99795 * 1 2 3 32 32 H 1.09002 * 109.47167 * 263.99186 * 7 6 4 33 33 H 1.09005 * 109.47704 * 23.99191 * 7 6 4 34 34 H 1.09006 * 109.47631 * 143.99239 * 7 6 4 35 35 H 1.09002 * 110.72101 * 35.79161 * 10 8 6 36 36 H 1.08997 * 110.71888 * 159.06506 * 10 8 6 37 37 H 1.08997 * 109.88482 * 97.22726 * 11 10 8 38 38 H 1.09001 * 109.87921 * 218.24171 * 11 10 8 39 39 H 0.97008 * 120.00203 * 180.02562 * 16 15 13 40 40 H 1.09003 * 110.36903 * 265.25851 * 21 12 11 41 41 H 1.09005 * 110.36598 * 143.04618 * 21 12 11 42 42 H 1.09000 * 110.79644 * 241.77722 * 25 23 22 43 43 H 1.08999 * 110.54727 * 118.87626 * 25 23 22 44 44 H 1.08999 * 110.61135 * 241.25648 * 26 25 23 45 45 H 1.09003 * 110.60081 * 118.29460 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 0.8649 0.9414 -2.5890 8 6 2.1946 -0.9409 -3.6508 9 1 2.9369 -1.6948 -3.3885 10 6 2.7658 0.0682 -4.6818 11 6 1.5022 0.5665 -5.4143 12 7 0.4579 -0.4560 -5.2314 13 6 -0.8234 -0.3866 -5.7097 14 1 -1.5154 -1.1937 -5.5192 15 6 -1.2332 0.7215 -6.4385 16 7 -0.3900 1.7052 -6.6702 17 14 -2.9812 0.8165 -7.0904 18 1 -3.7237 -0.4076 -6.6958 19 1 -3.6573 2.0100 -6.5217 20 1 -2.9521 0.9226 -8.5713 21 6 1.0228 -1.5685 -4.4462 22 7 2.0184 -0.6906 1.1961 23 6 1.7245 -1.9687 1.4655 24 8 1.0387 -2.6920 0.7756 25 6 2.3867 -2.3683 2.7661 26 6 3.1138 -1.0830 3.2113 27 6 2.7906 -0.0941 2.1127 28 8 3.1704 1.0564 2.0695 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.1730 0.6390 -2.7292 33 1 0.9478 1.5485 -1.6875 34 1 1.1933 1.5232 -3.4503 35 1 3.2690 0.8926 -4.1765 36 1 3.4423 -0.4307 -5.3757 37 1 1.1734 1.5126 -4.9845 38 1 1.7156 0.6957 -6.4754 39 1 -0.6764 2.4798 -7.1792 40 1 1.3906 -2.3520 -5.1087 41 1 0.2735 -1.9703 -3.7641 42 1 3.1001 -3.1764 2.6048 43 1 1.6381 -2.6603 3.5026 44 1 4.1890 -1.2517 3.2715 45 1 2.7250 -0.7342 4.1680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033124442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:05 Heat of formation + Delta-G solvation = -43.416052 kcal Electronic energy + Delta-G solvation = -29246.337306 eV Core-core repulsion = 25266.227051 eV Total energy + Delta-G solvation = -3980.110255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.20260 -39.82842 -38.64359 -37.45521 -35.92524 -34.81995 -34.05931 -32.18614 -30.41384 -29.15057 -28.05943 -26.37258 -26.21690 -24.84368 -24.02659 -22.56371 -21.55797 -20.12787 -19.48212 -18.58570 -17.45712 -17.40249 -16.96842 -16.74215 -16.32590 -15.62979 -15.10189 -14.86226 -14.64045 -14.33887 -14.18087 -14.13465 -13.97099 -13.78164 -13.45296 -13.08440 -13.02282 -12.42493 -12.28783 -12.13844 -11.96212 -11.88675 -11.70678 -11.64495 -11.37030 -10.96766 -10.92967 -10.74977 -10.64940 -10.40483 -10.14390 -10.09627 -10.06687 -9.92544 -9.68384 -9.27585 -8.71648 -8.21394 -6.83824 -5.76207 -3.08723 1.40714 2.20034 2.58811 2.74684 3.30976 3.36881 3.43830 3.45329 3.84395 3.99536 4.17420 4.46127 4.48389 4.56731 4.82515 4.85132 5.06681 5.12247 5.28051 5.32159 5.35285 5.42427 5.44715 5.49520 5.57473 5.68974 5.72465 5.83486 5.97581 6.06720 6.16612 6.31800 6.39446 6.49264 6.58568 6.67058 6.69523 7.00163 7.18637 7.49540 7.52214 7.63866 7.71633 7.79138 8.19463 8.33775 9.17514 9.77363 10.43836 11.35783 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021866 B = 0.003452 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.212950 B = 8109.311286 C = 8283.758259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.111 3.889 3 H 0.127 0.873 4 C 0.509 3.491 5 O -0.540 6.540 6 N -0.581 5.581 7 C 0.065 3.935 8 C 0.125 3.875 9 H 0.098 0.902 10 C -0.156 4.156 11 C 0.172 3.828 12 N -0.602 5.602 13 C -0.223 4.223 14 H 0.077 0.923 15 C -0.007 4.007 16 N -0.922 5.922 17 Si 0.909 3.091 18 H -0.281 1.281 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.126 3.874 22 N -0.558 5.558 23 C 0.530 3.470 24 O -0.461 6.461 25 C -0.155 4.155 26 C -0.154 4.154 27 C 0.529 3.471 28 O -0.488 6.488 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.043 0.957 39 H 0.251 0.749 40 H 0.029 0.971 41 H 0.043 0.957 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.426 -3.070 19.625 20.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.006 3.994 3 H 0.145 0.855 4 C 0.294 3.706 5 O -0.418 6.418 6 N -0.312 5.312 7 C -0.077 4.077 8 C 0.021 3.979 9 H 0.116 0.884 10 C -0.195 4.195 11 C 0.048 3.952 12 N -0.329 5.329 13 C -0.352 4.352 14 H 0.095 0.905 15 C -0.203 4.203 16 N -0.570 5.570 17 Si 0.740 3.260 18 H -0.206 1.206 19 H -0.218 1.218 20 H -0.218 1.218 21 C -0.001 4.001 22 N -0.301 5.301 23 C 0.319 3.681 24 O -0.330 6.330 25 C -0.195 4.195 26 C -0.193 4.193 27 C 0.318 3.682 28 O -0.361 6.361 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.061 0.939 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.139 0.861 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.460 -3.216 19.106 20.424 hybrid contribution -0.958 0.237 -0.582 1.146 sum 5.502 -2.979 18.524 19.552 Atomic orbital electron populations 1.22397 0.91071 1.05154 1.04660 1.21211 0.97235 0.97837 0.83124 0.85528 1.20323 0.80846 0.84814 0.84569 1.90661 1.38781 1.26127 1.86212 1.47546 1.49994 1.28963 1.04689 1.22379 0.96020 0.86617 1.02722 1.22279 0.96946 0.94923 0.83706 0.88410 1.23259 0.99989 0.98634 0.97650 1.21379 0.83986 0.91975 0.97903 1.44545 1.09202 1.17132 1.62035 1.19083 0.86043 1.02805 1.27223 0.90497 1.24751 0.98060 0.96821 1.00678 1.69951 1.33428 1.08887 1.44781 0.86077 0.84075 0.77345 0.78472 1.20587 1.21797 1.21828 1.21893 0.93707 0.91543 0.92928 1.46506 1.47093 1.14537 1.21960 1.20663 0.79710 0.80410 0.87348 1.90783 1.35324 1.54165 1.52763 1.22449 1.01967 0.99377 0.95702 1.22443 1.04521 0.93487 0.98871 1.20844 0.76016 0.87969 0.83400 1.90777 1.51461 1.16951 1.76862 0.90237 0.91254 0.88427 0.90920 0.92491 0.88365 0.91721 0.91098 0.92696 0.93873 0.93822 0.95312 0.93892 0.86150 0.86357 0.86140 0.86193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 8.75 37.16 0.33 -1.89 16 2 C 0.11 1.55 2.30 -69.08 -0.16 1.39 16 3 H 0.13 1.65 6.69 -51.93 -0.35 1.30 16 4 C 0.51 8.80 6.72 -10.98 -0.07 8.73 16 5 O -0.54 -10.75 14.24 -10.30 -0.15 -10.90 16 6 N -0.58 -10.15 2.91 -171.47 -0.50 -10.65 16 7 C 0.06 1.06 7.52 59.84 0.45 1.51 16 8 C 0.13 2.35 3.64 -65.78 -0.24 2.11 16 9 H 0.10 1.84 7.07 -51.93 -0.37 1.47 16 10 C -0.16 -2.87 6.06 -24.89 -0.15 -3.02 16 11 C 0.17 3.90 4.36 -2.92 -0.01 3.89 16 12 N -0.60 -14.60 2.88 -169.86 -0.49 -15.09 16 13 C -0.22 -5.97 10.28 -15.06 -0.15 -6.12 16 14 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 15 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 16 N -0.92 -25.71 10.33 55.49 0.57 -25.14 16 17 Si 0.91 21.54 29.55 -169.99 -5.02 16.51 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 C 0.13 2.68 6.75 -2.53 -0.02 2.66 16 22 N -0.56 -7.03 2.27 -109.48 -0.25 -7.28 16 23 C 0.53 6.60 6.70 -11.08 -0.07 6.52 16 24 O -0.46 -7.60 15.13 -10.25 -0.16 -7.76 16 25 C -0.16 -1.01 7.03 -26.94 -0.19 -1.20 16 26 C -0.15 -0.89 7.03 -26.94 -0.19 -1.08 16 27 C 0.53 5.80 8.08 -11.09 -0.09 5.71 16 28 O -0.49 -6.79 17.23 5.60 0.10 -6.69 16 29 H 0.08 1.16 6.62 -51.93 -0.34 0.81 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 1.24 4.63 -51.93 -0.24 1.00 16 32 H 0.07 1.32 7.33 -51.93 -0.38 0.94 16 33 H 0.06 0.74 5.56 -51.93 -0.29 0.46 16 34 H 0.10 1.80 4.19 -51.93 -0.22 1.58 16 35 H 0.06 1.09 8.07 -51.93 -0.42 0.68 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.32 5.11 -51.93 -0.27 1.06 16 38 H 0.04 1.11 7.52 -51.93 -0.39 0.72 16 39 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.12 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 350.65 15.07 5.28 5.28 Total: -1.00 -34.23 350.65 -7.47 -41.70 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.19 Total: 1.07 kcal Atomic # 6 Polarization: 19.59 SS G_CDS: -0.67 Total: 18.92 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: -0.66 Total: -58.14 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.21 Total: -25.35 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.23 -7.47 -41.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033124442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.714 kcal (2) G-P(sol) polarization free energy of solvation -34.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds