Wall clock time and date at job start Tue Mar 31 2020 05:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47475 * 2 1 4 4 C 1.50704 * 109.47056 * 240.00181 * 2 1 3 5 5 O 1.21285 * 119.99766 * 240.00208 * 4 2 1 6 6 N 1.34777 * 120.00055 * 59.99526 * 4 2 1 7 7 C 1.46493 * 119.99869 * 0.02562 * 6 4 2 8 8 C 1.46503 * 119.99918 * 180.02562 * 6 4 2 9 9 H 1.09007 * 110.88491 * 350.32604 * 8 6 4 10 10 C 1.55161 * 111.00322 * 226.40499 * 8 6 4 11 11 C 1.54323 * 102.94017 * 277.42988 * 10 8 6 12 12 N 1.47293 * 107.30606 * 337.81724 * 11 10 8 13 13 C 1.36940 * 125.79344 * 178.92898 * 12 11 10 14 14 H 1.08001 * 120.00024 * 180.02562 * 13 12 11 15 15 C 1.38811 * 119.99987 * 359.97438 * 13 12 11 16 16 N 1.31618 * 119.99878 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00218 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46666 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47022 * 120.00256 * 17 15 13 20 20 H 1.48503 * 109.47150 * 240.00328 * 17 15 13 21 21 C 1.47423 * 108.55784 * 358.92594 * 12 11 10 22 22 N 1.46500 * 109.47212 * 120.00094 * 2 1 3 23 23 C 1.33879 * 122.76030 * 59.70761 * 22 2 1 24 24 O 1.21227 * 125.40017 * 359.97438 * 23 22 2 25 25 C 1.51317 * 109.20560 * 179.84319 * 23 22 2 26 26 C 1.54228 * 103.55287 * 0.38427 * 25 23 22 27 27 C 1.33870 * 122.76600 * 239.99835 * 22 2 1 28 28 O 1.21235 * 125.39508 * 0.02562 * 27 22 2 29 29 H 1.09004 * 109.47145 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46794 * 299.99930 * 1 2 3 31 31 H 1.09003 * 109.47025 * 59.99795 * 1 2 3 32 32 H 1.09002 * 109.47167 * 263.99186 * 7 6 4 33 33 H 1.09005 * 109.47704 * 23.99191 * 7 6 4 34 34 H 1.09006 * 109.47631 * 143.99239 * 7 6 4 35 35 H 1.09002 * 110.72101 * 35.79161 * 10 8 6 36 36 H 1.08997 * 110.71888 * 159.06506 * 10 8 6 37 37 H 1.08997 * 109.88482 * 97.22726 * 11 10 8 38 38 H 1.09001 * 109.87921 * 218.24171 * 11 10 8 39 39 H 0.97008 * 120.00203 * 180.02562 * 16 15 13 40 40 H 1.09003 * 110.36903 * 265.25851 * 21 12 11 41 41 H 1.09005 * 110.36598 * 143.04618 * 21 12 11 42 42 H 1.09000 * 110.79644 * 241.77722 * 25 23 22 43 43 H 1.08999 * 110.54727 * 118.87626 * 25 23 22 44 44 H 1.08999 * 110.61135 * 241.25648 * 26 25 23 45 45 H 1.09003 * 110.60081 * 118.29460 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 0.8649 0.9414 -2.5890 8 6 2.1946 -0.9409 -3.6508 9 1 2.9369 -1.6948 -3.3885 10 6 2.7658 0.0682 -4.6818 11 6 1.5022 0.5665 -5.4143 12 7 0.4579 -0.4560 -5.2314 13 6 -0.8234 -0.3866 -5.7097 14 1 -1.5154 -1.1937 -5.5192 15 6 -1.2332 0.7215 -6.4385 16 7 -0.3900 1.7052 -6.6702 17 14 -2.9812 0.8165 -7.0904 18 1 -3.7237 -0.4076 -6.6958 19 1 -3.6573 2.0100 -6.5217 20 1 -2.9521 0.9226 -8.5713 21 6 1.0228 -1.5685 -4.4462 22 7 2.0184 -0.6906 1.1961 23 6 1.7245 -1.9687 1.4655 24 8 1.0387 -2.6920 0.7756 25 6 2.3867 -2.3683 2.7661 26 6 3.1138 -1.0830 3.2113 27 6 2.7906 -0.0941 2.1127 28 8 3.1704 1.0564 2.0695 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.1730 0.6390 -2.7292 33 1 0.9478 1.5485 -1.6875 34 1 1.1933 1.5232 -3.4503 35 1 3.2690 0.8926 -4.1765 36 1 3.4423 -0.4307 -5.3757 37 1 1.1734 1.5126 -4.9845 38 1 1.7156 0.6957 -6.4754 39 1 -0.6764 2.4798 -7.1792 40 1 1.3906 -2.3520 -5.1087 41 1 0.2735 -1.9703 -3.7641 42 1 3.1001 -3.1764 2.6048 43 1 1.6381 -2.6603 3.5026 44 1 4.1890 -1.2517 3.2715 45 1 2.7250 -0.7342 4.1680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033124442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:04 Heat of formation + Delta-G solvation = -65.803458 kcal Electronic energy + Delta-G solvation = -29247.308097 eV Core-core repulsion = 25266.227051 eV Total energy + Delta-G solvation = -3981.081046 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.12479 -41.21462 -39.62667 -39.04650 -36.92274 -36.20075 -35.28250 -33.91417 -31.58800 -30.81941 -29.66771 -27.67193 -27.07197 -26.56279 -25.41328 -23.38542 -22.80815 -21.98791 -20.71226 -19.83316 -18.98460 -18.60289 -18.31032 -17.71597 -17.53485 -16.83554 -16.68150 -16.42993 -15.91280 -15.68012 -15.46756 -15.23196 -15.03912 -14.87007 -14.61130 -14.41856 -13.96106 -13.87566 -13.61031 -13.51307 -13.43815 -13.37425 -13.04747 -12.89320 -12.82197 -12.64885 -12.36166 -12.07681 -12.00998 -11.98979 -11.81853 -11.61661 -11.52026 -11.30704 -11.00393 -10.72705 -10.56688 -9.77615 -8.82190 -7.83912 -5.17874 0.55954 1.25965 1.39307 1.46670 1.48363 1.57425 1.71755 2.04442 2.49672 3.13398 3.28086 3.33680 3.36107 3.62253 3.65829 3.74040 3.79708 3.81249 3.98146 4.07179 4.20818 4.22954 4.27909 4.53273 4.56176 4.58595 4.63924 4.65531 4.76847 4.83918 4.87425 4.92072 4.93905 4.95842 4.99021 5.10686 5.46695 5.48397 5.64479 5.79692 5.83102 6.19809 6.29707 6.36414 6.75304 6.95764 7.11968 7.75985 8.41884 9.26310 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021866 B = 0.003452 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.212950 B = 8109.311286 C = 8283.758259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.111 3.889 3 H 0.137 0.863 4 C 0.505 3.495 5 O -0.568 6.568 6 N -0.584 5.584 7 C 0.075 3.925 8 C 0.135 3.865 9 H 0.102 0.898 10 C -0.139 4.139 11 C 0.182 3.818 12 N -0.615 5.615 13 C -0.236 4.236 14 H 0.073 0.927 15 C -0.053 4.053 16 N -0.943 5.943 17 Si 0.971 3.029 18 H -0.273 1.273 19 H -0.289 1.289 20 H -0.295 1.295 21 C 0.127 3.873 22 N -0.566 5.566 23 C 0.517 3.483 24 O -0.514 6.514 25 C -0.140 4.140 26 C -0.136 4.136 27 C 0.522 3.478 28 O -0.523 6.523 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.041 0.959 38 H 0.008 0.992 39 H 0.247 0.753 40 H 0.032 0.968 41 H 0.030 0.970 42 H 0.136 0.864 43 H 0.151 0.849 44 H 0.144 0.856 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.067 -3.234 22.390 23.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.005 3.995 3 H 0.155 0.845 4 C 0.293 3.707 5 O -0.447 6.447 6 N -0.315 5.315 7 C -0.067 4.067 8 C 0.030 3.970 9 H 0.120 0.880 10 C -0.177 4.177 11 C 0.058 3.942 12 N -0.342 5.342 13 C -0.365 4.365 14 H 0.091 0.909 15 C -0.247 4.247 16 N -0.592 5.592 17 Si 0.800 3.200 18 H -0.198 1.198 19 H -0.216 1.216 20 H -0.222 1.222 21 C 0.001 3.999 22 N -0.309 5.309 23 C 0.309 3.691 24 O -0.387 6.387 25 C -0.179 4.179 26 C -0.174 4.174 27 C 0.314 3.686 28 O -0.397 6.397 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.058 0.942 38 H 0.026 0.974 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.048 0.952 42 H 0.154 0.846 43 H 0.169 0.831 44 H 0.162 0.838 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.117 -3.390 21.913 23.288 hybrid contribution -1.150 0.252 -1.436 1.857 sum 5.967 -3.138 20.476 21.558 Atomic orbital electron populations 1.22305 0.90259 1.03990 1.05702 1.21167 0.97789 0.97998 0.82589 0.84528 1.20948 0.80066 0.84479 0.85233 1.90632 1.40011 1.27383 1.86685 1.47604 1.50107 1.29129 1.04644 1.22267 0.94427 0.86295 1.03686 1.22095 0.95758 0.95050 0.84104 0.88006 1.23118 0.98162 0.99110 0.97354 1.21174 0.85396 0.91503 0.96140 1.44704 1.08981 1.18268 1.62201 1.19309 0.87202 1.02752 1.27252 0.90938 1.25433 1.01404 0.96651 1.01183 1.70127 1.34760 1.09096 1.45233 0.85126 0.80182 0.77398 0.77282 1.19822 1.21575 1.22243 1.21940 0.94226 0.91036 0.92733 1.46817 1.47453 1.15043 1.21599 1.21794 0.78785 0.79777 0.88754 1.90757 1.37753 1.55257 1.54899 1.22583 1.02560 1.00089 0.92716 1.22594 1.05943 0.90923 0.97986 1.21814 0.74690 0.88220 0.83890 1.90762 1.52565 1.18690 1.77699 0.92419 0.88712 0.88823 0.93039 0.88958 0.90107 0.89795 0.89564 0.94168 0.97421 0.94304 0.94988 0.95190 0.84568 0.83129 0.83835 0.82617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.09 8.75 71.98 0.63 -3.46 16 2 C 0.11 3.00 2.30 44.25 0.10 3.10 16 3 H 0.14 3.39 6.69 -2.39 -0.02 3.37 16 4 C 0.51 17.39 6.72 87.66 0.59 17.98 16 5 O -0.57 -22.59 14.24 12.12 0.17 -22.42 16 6 N -0.58 -20.43 2.91 -814.81 -2.37 -22.80 16 7 C 0.08 2.48 7.52 127.77 0.96 3.44 16 8 C 0.13 5.03 3.64 46.38 0.17 5.20 16 9 H 0.10 3.79 7.07 -2.38 -0.02 3.77 16 10 C -0.14 -5.03 6.06 31.78 0.19 -4.83 16 11 C 0.18 8.47 4.36 86.68 0.38 8.85 16 12 N -0.61 -30.57 2.88 -691.31 -1.99 -32.56 16 13 C -0.24 -12.91 10.28 84.03 0.86 -12.05 16 14 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 15 C -0.05 -2.90 5.49 84.86 0.47 -2.44 16 16 N -0.94 -53.76 10.33 21.65 0.22 -53.54 16 17 Si 0.97 44.85 29.55 68.60 2.03 46.88 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 19 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 20 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 21 C 0.13 5.50 6.75 86.85 0.59 6.08 16 22 N -0.57 -13.41 2.27 -738.13 -1.68 -15.09 16 23 C 0.52 12.11 6.70 87.99 0.59 12.70 16 24 O -0.51 -16.99 15.13 12.30 0.19 -16.81 16 25 C -0.14 -1.29 7.03 30.46 0.21 -1.07 16 26 C -0.14 -0.95 7.03 30.46 0.21 -0.74 16 27 C 0.52 10.14 8.08 87.99 0.71 10.85 16 28 O -0.52 -13.56 17.23 -2.89 -0.05 -13.61 16 29 H 0.06 1.71 6.62 -2.39 -0.02 1.69 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.09 2.36 4.63 -2.39 -0.01 2.35 16 32 H 0.05 1.92 7.33 -2.39 -0.02 1.90 16 33 H 0.09 2.34 5.56 -2.38 -0.01 2.32 16 34 H 0.08 2.99 4.19 -2.38 -0.01 2.98 16 35 H 0.08 2.74 8.07 -2.39 -0.02 2.72 16 36 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 37 H 0.04 2.00 5.11 -2.39 -0.01 1.98 16 38 H 0.01 0.40 7.52 -2.39 -0.02 0.39 16 39 H 0.25 13.79 8.31 -92.70 -0.77 13.01 16 40 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.15 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.16 0.10 8.14 -2.39 -0.02 0.08 16 Total: -1.00 -77.87 350.65 4.21 -73.66 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 1.02 Total: 12.66 kcal Atomic # 6 Polarization: 36.95 SS G_CDS: 6.67 Total: 43.61 kcal Atomic # 7 Polarization: -118.16 SS G_CDS: -5.82 Total: -123.98 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: 0.31 Total: -52.83 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -77.87 4.21 -73.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033124442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.860 kcal (2) G-P(sol) polarization free energy of solvation -77.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds