Wall clock time and date at job start Tue Mar 31 2020 05:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 109.66514 * 2 1 4 4 C 1.50410 * 109.72491 * 239.84311 * 2 1 3 5 5 O 1.21280 * 118.45995 * 47.58159 * 4 2 1 6 6 N 1.33374 * 123.04706 * 227.82978 * 4 2 1 7 7 C 1.46502 * 117.70579 * 184.04758 * 6 4 2 8 8 C 1.45644 * 124.59135 * 3.77183 * 6 4 2 9 9 C 1.52985 * 110.77405 * 338.37357 * 8 6 4 10 10 N 1.47047 * 109.56753 * 120.29673 * 2 1 3 11 11 C 1.34775 * 121.35618 * 342.54254 * 10 2 1 12 12 O 1.21359 * 119.99847 * 347.64846 * 11 10 2 13 13 C 1.49446 * 120.00652 * 167.64807 * 11 10 2 14 14 O 1.21349 * 119.99777 * 354.01931 * 13 11 10 15 15 N 1.34775 * 120.00517 * 174.01717 * 13 11 10 16 16 C 1.46500 * 120.00215 * 184.40641 * 15 13 11 17 17 C 1.52999 * 109.46927 * 175.69377 * 16 15 13 18 18 C 1.50705 * 115.54908 * 53.27274 * 17 16 15 19 19 H 1.07997 * 119.99596 * 265.39999 * 18 17 16 20 20 C 1.37876 * 120.00015 * 85.40311 * 18 17 16 21 21 N 1.31516 * 119.99843 * 177.28265 * 20 18 17 22 22 Si 1.86799 * 120.00199 * 357.27639 * 20 18 17 23 23 H 1.48501 * 109.46713 * 90.03542 * 22 20 18 24 24 H 1.48491 * 109.47301 * 210.03758 * 22 20 18 25 25 H 1.48504 * 109.46994 * 330.04088 * 22 20 18 26 26 C 1.52997 * 117.50228 * 267.60223 * 17 16 15 27 27 C 1.53002 * 117.50010 * 198.94014 * 17 16 15 28 28 H 1.09000 * 109.47288 * 323.72388 * 1 2 3 29 29 H 1.09006 * 109.47088 * 83.72096 * 1 2 3 30 30 H 1.09000 * 109.47488 * 203.71717 * 1 2 3 31 31 H 1.09000 * 109.47110 * 269.74259 * 7 6 4 32 32 H 1.09001 * 109.47528 * 149.73613 * 7 6 4 33 33 H 1.09004 * 109.46807 * 29.74390 * 7 6 4 34 34 H 1.08996 * 109.22274 * 98.71184 * 8 6 4 35 35 H 1.09004 * 109.21976 * 218.04543 * 8 6 4 36 36 H 1.08999 * 109.72253 * 166.39737 * 9 8 6 37 37 H 1.09003 * 109.72491 * 287.05385 * 9 8 6 38 38 H 0.97004 * 119.99494 * 4.41316 * 15 13 11 39 39 H 1.08995 * 109.47423 * 295.69602 * 16 15 13 40 40 H 1.08999 * 109.46700 * 55.69543 * 16 15 13 41 41 H 0.96996 * 119.99851 * 179.97438 * 21 20 18 42 42 H 1.09008 * 117.49736 * 359.97438 * 26 17 16 43 43 H 1.08997 * 117.50125 * 145.02362 * 26 17 16 44 44 H 1.08995 * 117.49946 * 214.98328 * 27 17 16 45 45 H 1.09002 * 117.49715 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8967 1.0264 0.0000 4 6 2.0376 -0.7113 -1.2242 5 8 1.5556 -0.4259 -2.2999 6 7 2.9896 -1.6444 -1.1809 7 6 3.4598 -2.1973 -2.4535 8 6 3.5985 -2.1482 0.0424 9 6 3.4251 -1.1478 1.1868 10 7 2.0224 -0.6990 1.1963 11 6 1.2228 -0.9197 2.2585 12 8 0.1525 -0.3535 2.3404 13 6 1.6540 -1.8617 3.3356 14 8 2.6714 -2.5097 3.2034 15 7 0.9130 -1.9916 4.4539 16 6 1.3844 -2.8409 5.5505 17 6 0.4191 -2.7302 6.7324 18 6 -1.0301 -2.9955 6.4151 19 1 -1.6920 -2.1733 6.1866 20 6 -1.5108 -4.2877 6.4167 21 7 -2.7866 -4.5150 6.1925 22 14 -0.3500 -5.7157 6.7372 23 1 -0.3016 -5.9967 8.1946 24 1 -0.8357 -6.9198 6.0167 25 1 1.0103 -5.3656 6.2552 26 6 0.7274 -1.6788 7.8003 27 6 0.9323 -3.1645 8.1068 28 1 -0.3634 0.8285 0.6080 29 1 -0.3633 0.1124 -1.0216 30 1 -0.3634 -0.9408 0.4133 31 1 2.8597 -3.0689 -2.7148 32 1 4.5050 -2.4912 -2.3580 33 1 3.3644 -1.4431 -3.2347 34 1 3.1265 -3.0917 0.3161 35 1 4.6618 -2.3164 -0.1289 36 1 3.6637 -1.6289 2.1353 37 1 4.0836 -0.2932 1.0313 38 1 0.0675 -1.5226 4.5325 39 1 1.4297 -3.8767 5.2142 40 1 2.3774 -2.5159 5.8607 41 1 -3.1247 -5.4241 6.1933 42 1 1.6183 -1.0662 7.6611 43 1 -0.1178 -1.1793 8.2737 44 1 0.2218 -3.6417 8.7816 45 1 1.9575 -3.5295 8.1689 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326144192.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:03 Heat of formation + Delta-G solvation = -37.770480 kcal Electronic energy + Delta-G solvation = -28485.988479 eV Core-core repulsion = 24506.123035 eV Total energy + Delta-G solvation = -3979.865445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.40186 -40.01339 -38.48691 -37.26011 -36.76032 -35.38684 -33.64075 -32.21680 -31.75662 -29.65298 -27.42847 -27.26508 -25.67959 -24.88566 -23.54035 -22.82217 -21.76317 -20.17463 -19.48470 -18.73124 -17.97166 -17.40393 -16.69334 -16.51463 -16.16025 -15.87226 -15.84638 -15.32655 -15.16554 -14.76456 -14.67167 -13.99674 -13.88468 -13.45189 -13.34066 -13.19824 -12.90894 -12.79593 -12.54504 -12.50086 -12.36663 -12.25269 -12.06961 -11.82558 -11.68460 -11.22891 -10.85564 -10.71469 -10.61639 -10.38496 -10.27669 -9.77243 -9.30817 -9.13293 -9.05500 -8.87455 -8.80333 -8.66625 -8.48552 -6.22667 -4.29027 1.52285 2.19132 2.34080 2.70462 3.21678 3.30730 3.32252 3.34631 3.58489 4.12630 4.31594 4.45678 4.56665 4.80228 4.84470 4.87499 4.91916 4.99333 5.05529 5.06030 5.24269 5.47199 5.54000 5.54772 5.62558 5.72753 5.86772 5.88412 5.90374 5.97051 6.04557 6.10675 6.29194 6.33545 6.35888 6.61178 6.73709 6.83402 6.92094 7.00046 7.10449 7.52428 7.58598 7.81591 7.93904 8.27885 8.35072 8.78638 9.39295 10.88311 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018534 B = 0.003349 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.402170 B = 8359.454220 C = 8428.813609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.136 3.864 3 H 0.107 0.893 4 C 0.512 3.488 5 O -0.541 6.541 6 N -0.606 5.606 7 C 0.077 3.923 8 C 0.101 3.899 9 C 0.060 3.940 10 N -0.598 5.598 11 C 0.516 3.484 12 O -0.496 6.496 13 C 0.499 3.501 14 O -0.536 6.536 15 N -0.656 5.656 16 C 0.147 3.853 17 C -0.019 4.019 18 C -0.497 4.497 19 H 0.081 0.919 20 C 0.083 3.917 21 N -0.890 5.890 22 Si 0.877 3.123 23 H -0.276 1.276 24 H -0.293 1.293 25 H -0.256 1.256 26 C -0.176 4.176 27 C -0.191 4.191 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.160 0.840 37 H 0.074 0.926 38 H 0.422 0.578 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.267 0.733 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.114 5.993 -10.423 19.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.030 3.970 3 H 0.125 0.875 4 C 0.299 3.701 5 O -0.418 6.418 6 N -0.339 5.339 7 C -0.066 4.066 8 C -0.022 4.022 9 C -0.062 4.062 10 N -0.335 5.335 11 C 0.299 3.701 12 O -0.369 6.369 13 C 0.279 3.721 14 O -0.418 6.418 15 N -0.305 5.305 16 C 0.024 3.976 17 C -0.020 4.020 18 C -0.534 4.534 19 H 0.099 0.901 20 C -0.121 4.121 21 N -0.526 5.526 22 Si 0.705 3.295 23 H -0.202 1.202 24 H -0.220 1.220 25 H -0.181 1.181 26 C -0.213 4.213 27 C -0.228 4.228 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.177 0.823 37 H 0.093 0.907 38 H 0.260 0.740 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 14.775 5.857 -10.975 19.315 hybrid contribution 0.286 -0.826 0.199 0.897 sum 15.061 5.031 -10.777 19.190 Atomic orbital electron populations 1.22047 0.89689 1.05056 1.02933 1.21420 0.98329 0.96316 0.80934 0.87507 1.20269 0.79250 0.79537 0.91035 1.90723 1.56517 1.64923 1.29639 1.47248 1.38678 1.39667 1.08267 1.21761 0.99227 0.99621 0.86002 1.21837 0.98944 0.98252 0.83217 1.23122 0.80760 0.98334 1.03942 1.48082 1.12496 1.57705 1.15248 1.20283 0.84516 0.82464 0.82826 1.90817 1.22397 1.47290 1.76441 1.19939 0.84761 0.83807 0.83566 1.90421 1.25550 1.47090 1.78714 1.45836 1.23951 1.46206 1.14552 1.21410 0.95707 0.94159 0.86327 1.19576 0.95924 1.00632 0.85915 1.20193 0.90024 0.94135 1.49074 0.90148 1.24976 0.94730 0.98785 0.93625 1.69888 1.13187 1.21343 1.48144 0.86916 0.82198 0.81777 0.78624 1.20218 1.21968 1.18063 1.22872 1.01488 0.91130 1.05856 1.22964 1.00285 0.98010 1.01583 0.89583 0.90968 0.91148 0.92472 0.91056 0.90298 0.90536 0.89272 0.82326 0.90743 0.73990 0.90961 0.92681 0.92357 0.90812 0.89257 0.89019 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 7.87 37.15 0.29 -1.59 16 2 C 0.14 1.66 3.64 -68.93 -0.25 1.41 16 3 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 4 C 0.51 6.63 7.09 -11.75 -0.08 6.55 16 5 O -0.54 -8.41 15.27 5.56 0.08 -8.32 16 6 N -0.61 -6.47 3.20 -182.79 -0.59 -7.05 16 7 C 0.08 0.65 10.19 59.85 0.61 1.26 16 8 C 0.10 0.91 6.57 -4.51 -0.03 0.88 16 9 C 0.06 0.60 6.13 -3.63 -0.02 0.57 16 10 N -0.60 -7.52 2.98 -167.07 -0.50 -8.02 16 11 C 0.52 7.88 7.15 -11.59 -0.08 7.80 16 12 O -0.50 -8.49 13.11 5.49 0.07 -8.42 16 13 C 0.50 8.23 7.74 -11.59 -0.09 8.14 16 14 O -0.54 -8.84 13.31 5.50 0.07 -8.76 16 15 N -0.66 -11.89 5.40 -60.73 -0.33 -12.22 16 16 C 0.15 2.80 5.36 -4.04 -0.02 2.78 16 17 C -0.02 -0.40 1.01 -155.66 -0.16 -0.56 16 18 C -0.50 -12.60 8.59 -34.44 -0.30 -12.89 16 19 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 20 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 21 N -0.89 -25.75 13.96 55.43 0.77 -24.98 16 22 Si 0.88 20.40 25.17 -169.99 -4.28 16.13 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.26 -5.58 5.33 56.52 0.30 -5.27 16 26 C -0.18 -3.21 9.92 -26.69 -0.26 -3.47 16 27 C -0.19 -3.65 7.77 -26.69 -0.21 -3.86 16 28 H 0.09 1.15 7.24 -51.93 -0.38 0.78 16 29 H 0.07 0.96 7.22 -51.93 -0.37 0.58 16 30 H 0.07 1.08 6.59 -51.93 -0.34 0.74 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.41 7.81 -51.93 -0.41 0.00 16 33 H 0.08 0.74 7.22 -51.93 -0.38 0.37 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.54 7.85 -51.93 -0.41 0.13 16 36 H 0.16 1.77 4.40 -53.92 -0.24 1.54 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.42 7.99 7.38 -40.82 -0.30 7.69 16 39 H 0.07 1.50 5.99 -51.93 -0.31 1.19 16 40 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.07 1.17 8.14 -51.92 -0.42 0.75 16 43 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 44 H 0.09 1.87 7.49 -51.93 -0.39 1.48 16 45 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 357.08 15.07 5.38 5.38 Total: -1.00 -30.37 357.08 -6.56 -36.93 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.56 Total: 10.17 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -0.70 Total: 9.16 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: -0.64 Total: -52.27 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: 0.23 Total: -25.50 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.28 Total: 16.13 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.37 -6.56 -36.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326144192.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.837 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds