Wall clock time and date at job start Tue Mar 31 2020 05:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42898 * 109.47354 * 2 1 4 4 C 1.35422 * 117.00064 * 180.02562 * 3 2 1 5 5 N 1.32238 * 119.80414 * 0.27538 * 4 3 2 6 6 C 1.31877 * 121.80130 * 180.26860 * 5 4 3 7 7 C 1.50710 * 119.40590 * 179.72103 * 6 5 4 8 8 C 1.38350 * 121.18970 * 359.74265 * 6 5 4 9 9 C 1.38339 * 119.45684 * 359.97438 * 8 6 5 10 10 C 1.39986 * 118.34827 * 359.97438 * 9 8 6 11 11 C 1.47526 * 120.59738 * 180.02562 * 10 9 8 12 12 O 1.21589 * 119.99724 * 180.02562 * 11 10 9 13 13 N 1.34770 * 120.00107 * 0.02562 * 11 10 9 14 14 C 1.46500 * 120.00423 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47361 * 180.02562 * 14 13 11 16 16 H 1.08994 * 109.47294 * 64.99703 * 15 14 13 17 17 C 1.53006 * 109.47104 * 185.00342 * 15 14 13 18 18 O 1.42900 * 109.47466 * 54.99437 * 17 15 14 19 19 N 1.46505 * 109.47024 * 304.99744 * 15 14 13 20 20 C 1.36931 * 119.99788 * 155.00126 * 19 15 14 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 15 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 15 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48496 * 109.47141 * 59.99751 * 24 22 20 26 26 H 1.48490 * 109.47071 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46993 * 300.00028 * 24 22 20 28 28 H 1.08996 * 109.46463 * 299.99633 * 1 2 3 29 29 H 1.09002 * 109.46988 * 59.99712 * 1 2 3 30 30 H 1.08997 * 109.46947 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47078 * 240.00124 * 2 1 3 32 32 H 1.08995 * 109.47485 * 120.00748 * 2 1 3 33 33 H 1.08999 * 109.47189 * 270.02407 * 7 6 5 34 34 H 1.09002 * 109.47043 * 30.01874 * 7 6 5 35 35 H 1.08993 * 109.47233 * 150.01909 * 7 6 5 36 36 H 1.07996 * 120.27712 * 179.97438 * 8 6 5 37 37 H 1.08000 * 120.82445 * 179.97438 * 9 8 6 38 38 H 0.96998 * 119.99979 * 359.97438 * 13 11 10 39 39 H 1.09005 * 109.46957 * 59.99705 * 14 13 11 40 40 H 1.09002 * 109.46680 * 300.00186 * 14 13 11 41 41 H 1.08997 * 109.47191 * 175.00471 * 17 15 14 42 42 H 1.09004 * 109.46584 * 294.99655 * 17 15 14 43 43 H 0.96700 * 113.99900 * 180.02562 * 18 17 15 44 44 H 0.97000 * 119.99792 * 334.99921 * 19 15 14 45 45 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3490 1.5246 -0.0005 5 7 4.1509 0.4732 -0.0065 6 6 5.4635 0.6002 -0.0021 7 6 6.3266 -0.6353 -0.0029 8 6 6.0626 1.8473 0.0039 9 6 5.2715 2.9821 0.0046 10 6 3.8807 2.8228 -0.0013 11 6 2.9902 3.9990 -0.0014 12 8 1.7837 3.8480 -0.0061 13 7 3.5139 5.2407 0.0038 14 6 2.6296 6.4088 0.0043 15 6 3.4718 7.6861 0.0099 16 1 4.0370 7.7527 -0.9197 17 6 2.5524 8.9026 0.1362 18 8 1.7280 8.7585 1.2945 19 7 4.3988 7.6548 1.1439 20 6 5.5626 8.3748 1.0968 21 1 5.7970 8.9660 0.2239 22 6 6.4382 8.3497 2.1737 23 7 6.1524 7.6296 3.2377 24 14 8.0222 9.3380 2.1127 25 1 7.7010 10.7780 1.9449 26 1 8.7766 9.1425 3.3767 27 1 8.8486 8.8785 0.9676 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 6.5310 -0.9364 1.0245 34 1 5.8067 -1.4412 -0.5211 35 1 7.2659 -0.4220 -0.5129 36 1 7.1391 1.9342 0.0080 37 1 5.7158 3.9665 0.0097 38 1 4.4764 5.3612 0.0079 39 1 1.9978 6.3857 0.8922 40 1 2.0035 6.3907 -0.8878 41 1 3.1555 9.8057 0.2294 42 1 1.9231 8.9760 -0.7508 43 1 1.1181 9.4951 1.4372 44 1 4.1881 7.1241 1.9280 45 1 6.7644 7.6118 3.9900 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676591829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:09 Heat of formation + Delta-G solvation = -78.079629 kcal Electronic energy + Delta-G solvation = -27603.764474 eV Core-core repulsion = 23622.151094 eV Total energy + Delta-G solvation = -3981.613380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.87206 -38.87039 -38.13255 -37.03092 -34.84035 -33.60812 -33.06980 -32.28004 -31.22721 -30.94130 -28.56291 -27.78947 -25.28742 -23.85727 -23.60945 -22.87002 -22.27601 -20.15020 -20.04867 -18.36739 -17.73825 -17.09482 -16.73354 -16.56671 -16.32924 -15.38499 -14.94817 -14.74031 -14.51291 -14.28950 -14.18110 -14.03301 -13.74711 -13.41699 -13.20699 -13.10871 -12.81731 -12.74231 -12.65910 -12.43650 -12.26730 -12.03310 -11.86447 -11.50622 -11.38632 -10.88815 -10.84872 -10.71994 -10.56314 -10.13904 -9.97222 -9.86011 -9.78815 -9.41884 -9.29431 -8.98570 -8.58536 -8.32224 -7.04886 -5.82331 -3.12940 0.72642 1.27345 3.00627 3.13918 3.37513 3.42969 3.44378 3.57596 3.93638 4.07861 4.51345 4.63779 4.87154 4.94137 4.97097 4.97259 5.04497 5.14977 5.29592 5.36284 5.37636 5.39738 5.44411 5.54171 5.59362 5.63128 5.78512 5.80053 5.86705 5.92590 6.02932 6.04740 6.07153 6.07949 6.37687 6.39978 6.52832 6.77586 6.97903 7.29590 7.60728 7.74601 8.03448 8.22543 8.34480 8.69000 9.46600 10.02349 10.39233 11.38931 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011711 B = 0.003693 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.411434 B = 7580.963343 C = 9533.448248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.268 6.268 4 C 0.376 3.624 5 N -0.550 5.550 6 C 0.186 3.814 7 C -0.106 4.106 8 C -0.219 4.219 9 C 0.000 4.000 10 C -0.210 4.210 11 C 0.560 3.440 12 O -0.530 6.530 13 N -0.711 5.711 14 C 0.121 3.879 15 C 0.165 3.835 16 H 0.065 0.935 17 C 0.060 3.940 18 O -0.560 6.560 19 N -0.714 5.714 20 C -0.249 4.249 21 H 0.070 0.930 22 C -0.007 4.007 23 N -0.925 5.925 24 Si 0.905 3.095 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.143 0.857 37 H 0.151 0.849 38 H 0.406 0.594 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.027 0.973 43 H 0.364 0.636 44 H 0.389 0.611 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.761 -13.705 -8.870 16.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.173 6.173 4 C 0.195 3.805 5 N -0.276 5.276 6 C 0.048 3.952 7 C -0.163 4.163 8 C -0.239 4.239 9 C -0.026 4.026 10 C -0.216 4.216 11 C 0.346 3.654 12 O -0.408 6.408 13 N -0.363 5.363 14 C -0.003 4.003 15 C 0.054 3.946 16 H 0.083 0.917 17 C -0.022 4.022 18 O -0.363 6.363 19 N -0.355 5.355 20 C -0.380 4.380 21 H 0.087 0.913 22 C -0.204 4.204 23 N -0.572 5.572 24 Si 0.736 3.264 25 H -0.214 1.214 26 H -0.217 1.217 27 H -0.212 1.212 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.161 0.839 37 H 0.169 0.831 38 H 0.243 0.757 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.045 0.955 43 H 0.208 0.792 44 H 0.224 0.776 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.758 -14.901 -8.849 17.972 hybrid contribution 1.492 1.829 0.323 2.382 sum -3.266 -13.072 -8.526 15.945 Atomic orbital electron populations 1.21778 0.92962 1.02321 1.03768 1.22647 0.95099 0.81593 1.02076 1.86546 1.15582 1.29422 1.85716 1.19729 0.84429 0.88355 0.87942 1.67245 1.05974 1.32539 1.21810 1.21123 0.88793 0.95280 0.89971 1.20793 0.97965 0.94115 1.03469 1.21738 1.01684 0.92146 1.08318 1.21796 0.91253 1.00350 0.89155 1.20088 0.94303 0.92479 1.14744 1.17715 0.87633 0.82677 0.77384 1.90787 1.14193 1.86015 1.49773 1.45854 1.11308 1.04938 1.74234 1.21532 0.92616 0.84095 1.02062 1.20603 0.90038 0.90614 0.93350 0.91673 1.23025 0.92371 1.00746 0.86029 1.86577 1.54781 1.47548 1.47381 1.42383 1.19628 1.56941 1.16579 1.19177 0.95825 1.22163 1.00880 0.91251 1.24743 0.98985 1.00299 0.96353 1.69672 1.37548 1.43627 1.06348 0.86313 0.83466 0.79893 0.76697 1.21355 1.21726 1.21242 0.91452 0.91558 0.90640 0.91860 0.91803 0.89888 0.90402 0.90171 0.83929 0.83133 0.75743 0.90538 0.92087 0.93349 0.95521 0.79181 0.77637 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 37.16 0.38 -1.18 16 2 C 0.06 0.77 6.03 37.16 0.22 0.99 16 3 O -0.27 -4.51 8.22 -39.73 -0.33 -4.83 16 4 C 0.38 6.20 7.51 -16.61 -0.12 6.08 16 5 N -0.55 -7.90 9.11 -9.21 -0.08 -7.99 16 6 C 0.19 2.24 6.78 -82.53 -0.56 1.68 16 7 C -0.11 -0.85 10.16 36.01 0.37 -0.48 16 8 C -0.22 -2.61 9.71 -39.50 -0.38 -2.99 16 9 C 0.00 0.00 9.64 -38.89 -0.37 -0.37 16 10 C -0.21 -3.51 5.90 -104.69 -0.62 -4.13 16 11 C 0.56 10.62 7.77 -12.48 -0.10 10.52 16 12 O -0.53 -11.49 15.19 -16.48 -0.25 -11.74 16 13 N -0.71 -12.80 5.34 -61.35 -0.33 -13.13 16 14 C 0.12 2.23 5.12 -4.04 -0.02 2.21 16 15 C 0.17 3.15 2.84 -67.93 -0.19 2.95 16 16 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 17 C 0.06 1.04 6.86 37.16 0.25 1.29 16 18 O -0.56 -10.12 12.64 -35.23 -0.45 -10.56 16 19 N -0.71 -16.89 4.51 -53.42 -0.24 -17.13 16 20 C -0.25 -6.46 9.93 -15.06 -0.15 -6.61 16 21 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 22 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 23 N -0.92 -26.91 13.06 55.49 0.72 -26.19 16 24 Si 0.91 21.37 29.55 -169.99 -5.02 16.34 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 32 H 0.06 0.76 8.11 -51.93 -0.42 0.34 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.48 8.07 -51.93 -0.42 0.06 16 36 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 37 H 0.15 1.99 6.52 -52.49 -0.34 1.65 16 38 H 0.41 7.09 6.24 -40.82 -0.25 6.84 16 39 H 0.08 1.59 7.40 -51.93 -0.38 1.21 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.36 4.75 9.12 45.56 0.42 5.16 16 44 H 0.39 10.30 7.80 -40.82 -0.32 9.98 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 381.72 15.07 5.75 5.75 Total: -1.00 -33.79 381.72 -7.53 -41.31 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: -5.91 Total: 18.47 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: -1.39 Total: 9.68 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: 0.07 Total: -64.43 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -1.02 Total: -27.13 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.79 -7.53 -41.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676591829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.766 kcal (2) G-P(sol) polarization free energy of solvation -33.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds