Wall clock time and date at job start Tue Mar 31 2020 05:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47110 * 2 1 4 4 C 1.53002 * 109.46814 * 239.99739 * 2 1 3 5 5 N 1.46906 * 109.47053 * 65.00187 * 4 2 1 6 6 C 1.46895 * 110.99789 * 179.97438 * 5 4 2 7 7 C 1.50704 * 109.47030 * 179.97438 * 6 5 4 8 8 O 1.21294 * 119.99926 * 0.02562 * 7 6 5 9 9 N 1.34767 * 120.00169 * 179.97438 * 7 6 5 10 10 C 1.37102 * 120.00058 * 180.02562 * 9 7 6 11 11 H 1.08001 * 120.00073 * 0.02562 * 10 9 7 12 12 C 1.38957 * 120.00049 * 180.02562 * 10 9 7 13 13 N 1.31410 * 119.99604 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99778 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47124 * 90.00361 * 14 12 10 16 16 H 1.48500 * 109.46917 * 210.00009 * 14 12 10 17 17 H 1.48494 * 109.47470 * 329.99835 * 14 12 10 18 18 C 1.53000 * 109.47029 * 119.99981 * 2 1 3 19 19 N 1.46495 * 109.47334 * 294.99467 * 18 2 1 20 20 C 1.34774 * 120.00207 * 179.97438 * 19 18 2 21 21 O 1.21277 * 120.00085 * 0.02562 * 20 19 18 22 22 C 1.50699 * 120.00005 * 180.02562 * 20 19 18 23 23 C 1.50701 * 109.47023 * 180.02562 * 22 20 19 24 24 C 1.41384 * 126.58100 * 90.00492 * 23 22 20 25 25 C 1.34519 * 106.84165 * 179.97438 * 24 23 22 26 26 O 1.34307 * 108.41824 * 359.97438 * 25 24 23 27 27 C 1.34305 * 109.47752 * 359.78006 * 26 25 24 28 28 H 1.08993 * 109.46967 * 59.99924 * 1 2 3 29 29 H 1.08997 * 109.46762 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46776 * 299.99721 * 1 2 3 31 31 H 1.08992 * 109.47056 * 304.99857 * 4 2 1 32 32 H 1.09004 * 109.47006 * 184.99974 * 4 2 1 33 33 H 1.00899 * 110.99484 * 303.95475 * 5 4 2 34 34 H 1.08996 * 109.47424 * 299.99656 * 6 5 4 35 35 H 1.09002 * 109.47411 * 60.00282 * 6 5 4 36 36 H 0.97000 * 120.00220 * 0.02562 * 9 7 6 37 37 H 0.97005 * 119.99191 * 179.97438 * 13 12 10 38 38 H 1.08994 * 109.47370 * 55.00030 * 18 2 1 39 39 H 1.09006 * 109.46810 * 174.99833 * 18 2 1 40 40 H 0.97007 * 120.00042 * 0.02562 * 19 18 2 41 41 H 1.09003 * 109.47362 * 300.00335 * 22 20 19 42 42 H 1.08993 * 109.47302 * 60.00193 * 22 20 19 43 43 H 1.07996 * 126.58042 * 359.92012 * 24 23 22 44 44 H 1.07995 * 125.78969 * 179.97438 * 25 24 23 45 45 H 1.08002 * 125.78775 * 180.23907 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6513 0.0374 -2.4457 6 6 2.1257 -0.6266 -3.6671 7 6 1.7086 0.1785 -4.8709 8 8 1.0786 1.2047 -4.7255 9 7 2.0365 -0.2412 -6.1089 10 6 1.6575 0.4915 -7.2039 11 1 1.0965 1.4053 -7.0744 12 6 1.9951 0.0585 -8.4804 13 7 2.6771 -1.0537 -8.6379 14 14 1.4781 1.0565 -9.9724 15 1 2.5370 2.0457 -10.2974 16 1 1.2770 0.1483 -11.1299 17 1 0.2093 1.7689 -9.6760 18 6 2.0400 -0.7212 1.2492 19 7 1.6526 0.0354 2.4424 20 6 1.9957 -0.4136 3.6659 21 8 2.6256 -1.4437 3.7793 22 6 1.5966 0.3645 4.8933 23 6 2.0991 -0.3459 6.1237 24 6 3.3499 -0.1556 6.7548 25 6 3.3836 -0.9871 7.8117 26 8 2.2259 -1.6666 7.8542 27 6 1.4410 -1.2781 6.8360 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6054 -1.7198 -1.2951 32 1 3.1263 -0.7996 -1.2056 33 1 0.6528 0.1793 -2.4752 34 1 3.2125 -0.7038 -3.6401 35 1 1.6919 -1.6247 -3.7300 36 1 2.5406 -1.0617 -6.2252 37 1 2.9125 -1.3561 -9.5291 38 1 1.6054 -1.7198 1.2952 39 1 3.1264 -0.7995 1.2055 40 1 1.1484 0.8592 2.3518 41 1 2.0313 1.3631 4.8477 42 1 0.5104 0.4427 4.9366 43 1 4.1291 0.5258 6.4468 44 1 4.2027 -1.0907 8.5078 45 1 0.4504 -1.6525 6.6237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753610160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:27 Heat of formation + Delta-G solvation = -67.040583 kcal Electronic energy + Delta-G solvation = -25494.302925 eV Core-core repulsion = 21513.168234 eV Total energy + Delta-G solvation = -3981.134691 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.85542 -39.94335 -38.40464 -37.28589 -34.92494 -34.29828 -33.86867 -32.36619 -31.20316 -30.71028 -28.50859 -27.41955 -26.53195 -24.76153 -23.16531 -21.92920 -21.36993 -20.68967 -20.08756 -19.22402 -17.94091 -17.83267 -17.31857 -16.58764 -16.10420 -15.90124 -15.86083 -15.55784 -15.01452 -14.81493 -14.48546 -14.40123 -13.93641 -13.78091 -13.54184 -13.32571 -13.10267 -13.03983 -12.81575 -12.74047 -12.60307 -12.08573 -11.87372 -11.59414 -11.54760 -11.20299 -11.07892 -10.97880 -10.91135 -10.39930 -10.32997 -10.22229 -9.86991 -9.51421 -9.31455 -8.84932 -8.47119 -8.07358 -7.96415 -6.42173 -3.83063 1.46427 2.19837 2.39871 2.83046 3.04206 3.17598 3.26220 3.31946 3.90430 4.08990 4.30537 4.34527 4.42294 4.57342 4.65325 4.70333 4.81132 4.88157 5.00605 5.08573 5.12825 5.25087 5.34636 5.35369 5.42383 5.53915 5.59112 5.65332 5.70963 5.78836 5.82698 5.84567 5.98171 6.04201 6.11878 6.15050 6.21956 6.26850 6.79003 7.19445 7.22268 7.54698 7.64982 7.98003 8.05860 8.60757 9.17325 9.53904 10.05244 10.75538 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.052733 B = 0.001462 C = 0.001447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.851403 B =19143.202879 C =19351.018623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 H 0.089 0.911 4 C 0.066 3.934 5 N -0.668 5.668 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.584 6.584 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.931 3.069 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 C 0.125 3.875 19 N -0.729 5.729 20 C 0.510 3.490 21 O -0.532 6.532 22 C -0.071 4.071 23 C -0.164 4.164 24 C -0.199 4.199 25 C -0.044 4.044 26 O -0.177 6.177 27 C -0.027 4.027 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.074 0.926 33 H 0.349 0.651 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.401 0.599 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.146 0.854 44 H 0.201 0.799 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.703 -0.336 29.751 29.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.121 4.121 3 H 0.107 0.893 4 C -0.064 4.064 5 N -0.302 5.302 6 C -0.083 4.083 7 C 0.226 3.774 8 O -0.469 6.469 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C 0.001 3.999 19 N -0.382 5.382 20 C 0.296 3.704 21 O -0.408 6.408 22 C -0.111 4.111 23 C -0.166 4.166 24 C -0.218 4.218 25 C -0.111 4.111 26 O -0.073 6.073 27 C -0.095 4.095 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.169 0.831 34 H 0.104 0.896 35 H 0.061 0.939 36 H 0.226 0.774 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.236 0.764 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.164 0.836 44 H 0.218 0.782 45 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -1.143 -0.291 29.974 29.998 hybrid contribution -0.551 -0.314 -1.262 1.412 sum -1.694 -0.605 28.712 28.769 Atomic orbital electron populations 1.21899 0.94750 1.02022 1.02278 1.21365 0.96431 1.01170 0.93085 0.89278 1.21884 1.00788 0.94412 0.89355 1.60088 1.21007 1.49057 1.00024 1.21671 1.01195 0.95379 0.90007 1.19810 0.85624 0.87932 0.84040 1.90516 1.44412 1.26219 1.85722 1.41864 1.49461 1.24237 1.04434 1.19712 1.32915 1.06752 0.83617 0.87913 1.25267 0.96906 0.96633 0.99116 1.69617 1.38872 1.21706 1.24072 0.85851 0.79152 0.79040 0.80199 1.20383 1.20940 1.19434 1.21367 1.00233 0.95194 0.83077 1.46028 1.58287 1.28044 1.05825 1.20600 0.79527 0.85865 0.84381 1.90732 1.39135 1.24321 1.86609 1.19992 1.02635 0.99296 0.89172 1.19775 0.96014 1.02016 0.98779 1.21675 0.98590 1.03965 0.97613 1.23972 0.89092 0.96159 1.01883 1.84065 1.24823 1.54073 1.44309 1.23787 0.97534 0.98908 0.89294 0.91410 0.92682 0.92741 0.95198 0.90782 0.83073 0.89552 0.93864 0.77441 0.91869 0.91469 0.91302 0.76433 0.87835 0.88020 0.83605 0.78191 0.78373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.84 37.16 0.33 -0.99 16 2 C -0.10 -0.94 2.63 -90.62 -0.24 -1.18 16 3 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 4 C 0.07 0.77 5.14 -3.82 -0.02 0.75 16 5 N -0.67 -10.43 6.12 -115.06 -0.70 -11.14 16 6 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 7 C 0.44 10.38 7.82 -10.99 -0.09 10.30 16 8 O -0.58 -15.80 15.78 5.54 0.09 -15.71 16 9 N -0.56 -14.30 5.29 -10.96 -0.06 -14.35 16 10 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 11 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.52 13.05 55.50 0.72 -23.80 16 14 Si 0.93 21.01 29.55 -169.99 -5.02 15.98 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 C 0.13 1.15 5.06 -4.04 -0.02 1.13 16 19 N -0.73 -5.60 5.28 -60.30 -0.32 -5.91 16 20 C 0.51 4.83 7.82 -10.99 -0.09 4.75 16 21 O -0.53 -7.50 16.03 5.56 0.09 -7.41 16 22 C -0.07 -0.44 6.22 -29.03 -0.18 -0.63 16 23 C -0.16 -1.39 4.66 -104.74 -0.49 -1.88 16 24 C -0.20 -1.66 10.87 -39.70 -0.43 -2.09 16 25 C -0.04 -0.33 12.09 29.42 0.36 0.02 16 26 O -0.18 -1.61 10.65 5.69 0.06 -1.55 16 27 C -0.03 -0.22 12.01 29.42 0.35 0.13 16 28 H 0.07 0.68 6.68 -51.93 -0.35 0.34 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.37 7.18 -51.93 -0.37 0.00 16 31 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.35 5.57 6.68 -39.29 -0.26 5.31 16 34 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.39 9.52 7.90 -40.82 -0.32 9.19 16 37 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.40 2.06 7.65 -40.82 -0.31 1.75 16 41 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.20 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.20 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 384.74 15.07 5.80 5.80 Total: -1.00 -35.54 384.74 -6.75 -42.30 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -6.62 Total: 12.67 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -0.78 Total: 3.13 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: -0.36 Total: -55.21 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: 0.24 Total: -24.67 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.54 -6.75 -42.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753610160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.745 kcal (2) G-P(sol) polarization free energy of solvation -35.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds