Wall clock time and date at job start Tue Mar 31 2020 04:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47222 * 2 1 4 4 C 1.53003 * 109.46980 * 240.00056 * 2 1 3 5 5 C 1.50699 * 109.46908 * 120.00400 * 2 1 3 6 6 C 1.38355 * 119.85529 * 59.99699 * 5 2 1 7 7 C 1.37948 * 120.15457 * 180.02562 * 6 5 2 8 8 C 1.39609 * 119.84321 * 359.97438 * 7 6 5 9 9 C 1.47803 * 120.14367 * 180.02562 * 8 7 6 10 10 O 1.21562 * 119.99764 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99521 * 179.97438 * 9 8 7 12 12 C 1.39125 * 119.99581 * 183.03581 * 11 9 8 13 13 C 1.39517 * 119.83457 * 141.96981 * 12 11 9 14 14 C 1.36367 * 120.16409 * 179.76228 * 13 12 11 15 15 C 1.40875 * 119.83085 * 0.53741 * 14 13 12 16 16 C 1.41133 * 120.16075 * 179.69850 * 15 14 13 17 17 H 1.07998 * 120.00179 * 158.00364 * 16 15 14 18 18 C 1.39916 * 119.99975 * 338.00437 * 16 15 14 19 19 N 1.30869 * 119.99752 * 327.54836 * 18 16 15 20 20 Si 1.86795 * 119.99795 * 147.54901 * 18 16 15 21 21 H 1.48501 * 109.47068 * 94.98684 * 20 18 16 22 22 H 1.48503 * 109.46905 * 214.98415 * 20 18 16 23 23 H 1.48496 * 109.47353 * 334.98371 * 20 18 16 24 24 C 1.40884 * 119.67760 * 359.71919 * 15 14 13 25 25 C 1.36357 * 119.82866 * 0.02562 * 24 15 14 26 26 C 1.39602 * 119.70723 * 0.27764 * 8 7 6 27 27 C 1.37945 * 119.85194 * 359.48905 * 26 8 7 28 28 H 1.09004 * 109.47333 * 300.00495 * 1 2 3 29 29 H 1.09002 * 109.46981 * 59.99469 * 1 2 3 30 30 H 1.08995 * 109.47648 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46675 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.46913 * 299.99870 * 3 2 1 33 33 H 1.08997 * 109.46800 * 60.00179 * 3 2 1 34 34 H 1.08995 * 109.47078 * 300.00530 * 4 2 1 35 35 H 1.09002 * 109.46876 * 60.00410 * 4 2 1 36 36 H 1.08993 * 109.47028 * 180.02562 * 4 2 1 37 37 H 1.08002 * 119.92633 * 0.02562 * 6 5 2 38 38 H 1.07997 * 120.08434 * 179.97438 * 7 6 5 39 39 H 0.97000 * 120.00119 * 3.31273 * 11 9 8 40 40 H 1.07992 * 119.91514 * 0.02562 * 13 12 11 41 41 H 1.07997 * 120.08211 * 180.24183 * 14 13 12 42 42 H 0.96998 * 119.99724 * 179.97438 * 19 18 16 43 43 H 1.08004 * 120.08427 * 179.97438 * 24 15 14 44 44 H 1.08009 * 119.91466 * 180.02562 * 25 24 15 45 45 H 1.08002 * 120.07277 * 179.72358 * 26 8 7 46 46 H 1.07999 * 119.92937 * 180.21169 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.6961 -2.0351 1.4463 7 6 2.1521 -2.6913 2.5708 8 6 2.9549 -2.0158 3.4918 9 6 3.4475 -2.7126 4.6985 10 8 3.1542 -3.8766 4.8906 11 7 4.2228 -2.0578 5.5854 12 6 4.7386 -2.7307 6.6885 13 6 6.0308 -2.4481 7.1322 14 6 6.5412 -3.1002 8.2156 15 6 5.7644 -4.0694 8.8802 16 6 6.2881 -4.7531 9.9984 17 1 5.6202 -5.2127 10.7118 18 6 7.6726 -4.8354 10.1826 19 7 8.4687 -4.8876 9.1452 20 14 8.3846 -4.8707 11.9092 21 1 8.6020 -6.2793 12.3262 22 1 9.6796 -4.1441 11.9255 23 1 7.4383 -4.2168 12.8483 24 6 4.4623 -4.3533 8.4231 25 6 3.9635 -3.6894 7.3415 26 6 3.2860 -0.6778 3.2705 27 6 2.8273 -0.0350 2.1394 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7488 -1.2493 35 1 1.6767 -0.2073 -2.1392 36 1 3.1299 -0.7217 -1.2491 37 1 1.0753 -2.5566 0.7328 38 1 1.8886 -3.7252 2.7384 39 1 4.4179 -1.1164 5.4568 40 1 6.6266 -1.7080 6.6189 41 1 7.5402 -2.8776 8.5603 42 1 9.4286 -4.9443 9.2729 43 1 3.8612 -5.0954 8.9274 44 1 2.9653 -3.9056 6.9901 45 1 3.9030 -0.1482 3.9813 46 1 3.0855 0.9991 1.9653 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000037208.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:12 Heat of formation + Delta-G solvation = -5.397350 kcal Electronic energy + Delta-G solvation = -25612.430125 eV Core-core repulsion = 22044.817748 eV Total energy + Delta-G solvation = -3567.612377 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.163 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.37443 -39.21049 -37.30809 -36.16193 -34.49455 -33.09789 -31.25163 -30.49457 -29.54089 -28.78574 -27.66980 -27.56793 -25.30145 -23.75398 -22.37121 -21.64208 -20.80625 -20.01131 -19.25156 -17.91634 -17.33993 -16.35760 -15.97657 -15.27494 -15.05487 -14.93535 -14.68519 -14.46346 -14.14255 -13.95820 -13.77709 -13.59733 -13.17193 -12.87153 -12.83321 -12.56291 -12.25929 -12.21758 -12.05392 -12.00371 -11.99003 -11.60754 -11.31060 -11.23848 -11.16007 -11.04693 -10.97638 -10.73427 -10.71445 -10.10340 -9.64487 -9.35161 -9.06119 -9.05125 -8.84755 -8.78412 -7.54464 -7.14880 -6.85827 -4.27541 0.85694 1.30354 2.64041 2.98930 3.04695 3.10658 3.12012 3.30312 3.74861 3.88648 3.98623 4.26103 4.41577 4.50882 4.66715 4.82726 4.84738 4.94735 5.09343 5.22654 5.27116 5.29358 5.43268 5.44660 5.54837 5.56359 5.62579 5.66232 5.73258 5.82764 5.90448 5.92663 5.97379 6.19220 6.27130 6.35986 6.43928 6.45164 6.77080 6.81281 6.98082 7.00115 7.14865 7.29345 7.56722 7.70730 7.90037 8.01956 8.25439 8.29824 8.54890 8.78086 8.83585 9.00594 10.01919 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.037564 B = 0.002088 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.219050 B =13407.986226 C =13708.296577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 C -0.145 4.145 4 C -0.139 4.139 5 C -0.055 4.055 6 C -0.124 4.124 7 C -0.061 4.061 8 C -0.125 4.125 9 C 0.538 3.462 10 O -0.530 6.530 11 N -0.642 5.642 12 C -0.024 4.024 13 C -0.101 4.101 14 C -0.172 4.172 15 C 0.113 3.887 16 C -0.464 4.464 17 H 0.082 0.918 18 C 0.087 3.913 19 N -0.767 5.767 20 Si 0.897 3.103 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.257 1.257 24 C -0.224 4.224 25 C -0.064 4.064 26 C -0.088 4.088 27 C -0.129 4.129 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.125 0.875 38 H 0.135 0.865 39 H 0.393 0.607 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.284 0.716 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.125 0.875 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.550 12.260 -16.703 22.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.032 4.032 3 C -0.202 4.202 4 C -0.196 4.196 5 C -0.055 4.055 6 C -0.142 4.142 7 C -0.079 4.079 8 C -0.129 4.129 9 C 0.325 3.675 10 O -0.408 6.408 11 N -0.284 5.284 12 C -0.116 4.116 13 C -0.121 4.121 14 C -0.192 4.192 15 C 0.110 3.890 16 C -0.491 4.491 17 H 0.100 0.900 18 C -0.135 4.135 19 N -0.389 5.389 20 Si 0.720 3.280 21 H -0.195 1.195 22 H -0.199 1.199 23 H -0.181 1.181 24 C -0.244 4.244 25 C -0.084 4.084 26 C -0.106 4.106 27 C -0.147 4.147 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.143 0.857 38 H 0.153 0.847 39 H 0.227 0.773 40 H 0.107 0.893 41 H 0.125 0.875 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.120 0.880 45 H 0.143 0.857 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.497 11.390 -16.662 22.305 hybrid contribution 0.693 0.386 0.632 1.014 sum -8.803 11.776 -16.030 21.752 Atomic orbital electron populations 1.21895 0.93522 1.02238 1.01944 1.19552 0.95840 0.95128 0.92710 1.21976 1.01326 0.94877 1.02019 1.21896 1.01403 1.00294 0.96032 1.19976 0.96254 0.93929 0.95355 1.20924 1.01229 0.94302 0.97782 1.21276 0.94049 1.00348 0.92270 1.20134 1.01413 0.94581 0.96726 1.18287 0.80105 0.86477 0.82600 1.90758 1.57380 1.16449 1.76251 1.42833 1.49743 1.12459 1.23411 1.17041 0.94706 1.06000 0.93840 1.20175 0.92593 1.00846 0.98454 1.20610 1.00366 0.99396 0.98813 1.17599 0.90972 0.89710 0.90743 1.19514 0.91382 1.30733 1.07516 0.89963 1.25966 0.97417 0.91624 0.98519 1.69961 1.05806 1.30690 1.32476 0.86493 0.78898 0.79298 0.83291 1.19452 1.19888 1.18079 1.20583 0.98485 1.04910 1.00429 1.20303 0.97898 0.95773 0.94405 1.21343 0.98391 0.93586 0.97308 1.21086 0.98972 1.00397 0.94273 0.92378 0.92314 0.92289 0.92124 0.92343 0.92139 0.92288 0.92306 0.92360 0.85709 0.84692 0.77294 0.89270 0.87452 0.90556 0.88697 0.87981 0.85671 0.85210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.28 37.16 0.31 -0.62 16 2 C -0.03 -0.24 0.85 -155.66 -0.13 -0.37 16 3 C -0.14 -0.91 7.13 37.16 0.26 -0.64 16 4 C -0.14 -0.94 8.29 37.16 0.31 -0.64 16 5 C -0.05 -0.53 4.77 -104.53 -0.50 -1.03 16 6 C -0.12 -1.33 8.69 -39.64 -0.34 -1.67 16 7 C -0.06 -0.82 9.60 -39.18 -0.38 -1.19 16 8 C -0.13 -1.85 5.87 -104.97 -0.62 -2.47 16 9 C 0.54 10.23 7.58 -12.35 -0.09 10.13 16 10 O -0.53 -12.16 13.97 5.31 0.07 -12.09 16 11 N -0.64 -11.98 5.24 -10.61 -0.06 -12.03 16 12 C -0.02 -0.55 6.25 -83.60 -0.52 -1.07 16 13 C -0.10 -2.34 9.90 -39.78 -0.39 -2.73 16 14 C -0.17 -4.44 8.74 -39.26 -0.34 -4.78 16 15 C 0.11 3.04 5.57 -106.80 -0.60 2.45 16 16 C -0.46 -12.32 8.94 -37.86 -0.34 -12.66 16 17 H 0.08 2.11 8.02 -52.49 -0.42 1.69 16 18 C 0.09 2.16 4.77 -17.33 -0.08 2.07 16 19 N -0.77 -19.65 11.78 55.55 0.65 -19.00 16 20 Si 0.90 18.20 29.66 -169.99 -5.04 13.16 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 24 C -0.22 -5.81 9.74 -39.26 -0.38 -6.19 16 25 C -0.06 -1.58 8.58 -39.79 -0.34 -1.92 16 26 C -0.09 -1.03 9.54 -39.18 -0.37 -1.40 16 27 C -0.13 -1.29 8.96 -39.64 -0.36 -1.64 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.39 7.38 -51.93 -0.38 0.01 16 31 H 0.06 0.38 7.50 -51.93 -0.39 -0.01 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.37 7.50 -51.93 -0.39 -0.02 16 34 H 0.06 0.40 7.37 -51.93 -0.38 0.02 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.13 1.08 7.08 -52.49 -0.37 0.70 16 38 H 0.14 1.88 7.65 -52.49 -0.40 1.48 16 39 H 0.39 5.80 6.86 -40.82 -0.28 5.52 16 40 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 41 H 0.11 2.79 6.52 -52.49 -0.34 2.45 16 42 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 43 H 0.09 2.34 8.06 -52.48 -0.42 1.91 16 44 H 0.10 2.50 6.45 -52.48 -0.34 2.16 16 45 H 0.13 1.24 6.41 -52.49 -0.34 0.90 16 46 H 0.13 1.01 5.87 -52.49 -0.31 0.70 16 LS Contribution 373.76 15.07 5.63 5.63 Total: -1.00 -30.66 373.76 -10.08 -40.75 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -6.44 Total: 9.96 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -4.91 Total: -26.38 kcal Atomic # 7 Polarization: -31.63 SS G_CDS: 0.60 Total: -31.03 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.07 Total: -12.09 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.04 Total: 13.16 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.66 -10.08 -40.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000037208.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.352 kcal (2) G-P(sol) polarization free energy of solvation -30.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds