Wall clock time and date at job start Tue Mar 31 2020 04:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99719 * 2 1 4 4 N 1.46500 * 109.47019 * 124.99737 * 3 2 1 5 5 C 1.46495 * 120.00022 * 269.99645 * 4 3 2 6 6 C 1.50696 * 109.47192 * 270.00247 * 5 4 3 7 7 H 1.08000 * 120.00168 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00274 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00284 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 119.99585 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47317 * 90.00130 * 10 8 6 12 12 H 1.48505 * 109.47000 * 210.00113 * 10 8 6 13 13 H 1.48496 * 109.47047 * 330.00136 * 10 8 6 14 14 C 1.34781 * 119.99864 * 89.99895 * 4 3 2 15 15 O 1.21281 * 120.00049 * 179.97438 * 14 4 3 16 16 C 1.50702 * 119.99969 * 359.97438 * 14 4 3 17 17 C 1.52996 * 109.47076 * 179.97438 * 16 14 4 18 18 C 1.52999 * 109.47188 * 179.97438 * 17 16 14 19 19 N 1.46506 * 109.46967 * 180.02562 * 18 17 16 20 20 C 1.34763 * 124.17431 * 90.02896 * 19 18 17 21 21 O 1.21234 * 127.16039 * 359.92588 * 20 19 18 22 22 C 1.51585 * 105.68455 * 179.97438 * 20 19 18 23 23 N 1.47309 * 103.59064 * 359.97438 * 22 20 19 24 24 C 1.46504 * 126.68818 * 180.02562 * 23 22 20 25 25 C 1.33784 * 124.17723 * 269.72544 * 19 18 17 26 26 O 1.21539 * 123.77572 * 0.03940 * 25 19 18 27 27 H 1.08002 * 119.99855 * 180.02562 * 1 2 3 28 28 H 1.07995 * 119.99938 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00290 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47033 * 4.99794 * 3 2 1 31 31 H 1.09000 * 109.46752 * 244.99771 * 3 2 1 32 32 H 1.08996 * 109.47311 * 30.00460 * 5 4 3 33 33 H 1.09002 * 109.47028 * 150.00688 * 5 4 3 34 34 H 0.96997 * 119.99964 * 179.97438 * 9 8 6 35 35 H 1.08994 * 109.47199 * 60.00089 * 16 14 4 36 36 H 1.08997 * 109.46903 * 299.99644 * 16 14 4 37 37 H 1.09011 * 109.47030 * 59.99939 * 17 16 14 38 38 H 1.09005 * 109.47630 * 300.00244 * 17 16 14 39 39 H 1.08994 * 109.46812 * 60.00569 * 18 17 16 40 40 H 1.08997 * 109.47178 * 300.00192 * 18 17 16 41 41 H 1.09003 * 110.59995 * 118.52446 * 22 20 19 42 42 H 1.09001 * 110.60165 * 241.47120 * 22 20 19 43 43 H 1.08997 * 109.47182 * 90.00246 * 24 23 22 44 44 H 1.09005 * 109.47073 * 210.00531 * 24 23 22 45 45 H 1.08999 * 109.47477 * 329.99687 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1315 5 6 2.5587 1.8651 2.4248 6 6 2.8441 3.3438 2.4803 7 1 3.3039 3.8371 1.6367 8 6 2.5191 4.0668 3.6085 9 7 2.7686 5.3571 3.6571 10 14 1.7245 3.2135 5.0679 11 1 2.7805 2.7223 5.9893 12 1 0.8484 4.1738 5.7860 13 1 0.9129 2.0660 4.5886 14 6 4.2497 0.8663 0.9825 15 8 5.0199 0.8889 1.9190 16 6 4.6969 0.3174 -0.3479 17 6 6.1534 -0.1400 -0.2472 18 6 6.6073 -0.6978 -1.5977 19 7 8.0019 -1.1363 -1.5010 20 6 8.3815 -2.3797 -1.1463 21 8 7.6611 -3.3108 -0.8566 22 6 9.8969 -2.3718 -1.1835 23 7 10.2259 -0.9958 -1.5941 24 6 11.5662 -0.4373 -1.7891 25 6 9.0555 -0.3535 -1.7597 26 8 8.9655 0.8090 -2.1029 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 1.3585 2.1317 0.0895 31 1 2.6213 1.4026 -0.9314 32 1 1.4887 1.6968 2.5459 33 1 3.0989 1.3606 3.2259 34 1 2.5397 5.8658 4.4506 35 1 4.6120 1.0937 -1.1083 36 1 4.0678 -0.5296 -0.6214 37 1 6.2388 -0.9162 0.5134 38 1 6.7824 0.7073 0.0263 39 1 6.5220 0.0781 -2.3584 40 1 5.9784 -1.5451 -1.8706 41 1 10.3060 -2.5859 -0.1961 42 1 10.2663 -3.0890 -1.9165 43 1 11.8754 -0.5874 -2.8234 44 1 11.5514 0.6294 -1.5653 45 1 12.2690 -0.9383 -1.1233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292451621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:35:53 Heat of formation + Delta-G solvation = -47.211967 kcal Electronic energy + Delta-G solvation = -27290.586039 eV Core-core repulsion = 23310.311181 eV Total energy + Delta-G solvation = -3980.274858 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.55367 -39.26655 -38.84284 -36.50744 -36.14529 -35.68348 -33.48704 -32.97412 -32.08929 -29.90733 -28.52526 -27.14586 -26.31445 -25.43875 -23.17636 -22.63349 -21.48094 -20.34928 -20.00187 -18.43330 -17.67328 -17.46505 -16.99601 -16.87830 -16.29772 -15.83890 -15.58688 -15.40096 -15.17235 -14.73468 -14.52070 -14.37147 -14.23748 -14.20108 -13.66460 -13.09076 -13.03680 -12.94485 -12.80541 -12.58979 -12.27892 -11.95673 -11.75495 -11.69741 -11.51845 -11.15603 -11.03428 -10.92364 -10.74885 -10.50728 -10.46109 -10.12636 -9.98516 -9.54141 -9.36877 -9.26079 -8.99865 -8.56628 -7.72897 -6.06476 -4.05021 1.36193 1.79122 2.37007 2.63567 2.76612 3.30959 3.36170 3.37008 3.39061 3.69104 3.90513 4.31950 4.41749 4.58175 4.72884 4.79897 4.80340 4.97555 5.02186 5.10770 5.21574 5.24487 5.26365 5.32177 5.33637 5.40369 5.49202 5.59268 5.60572 5.78841 5.95448 6.01871 6.12698 6.17409 6.33387 6.72164 6.72947 6.84145 6.85597 6.97611 7.08428 7.37587 7.63750 7.82077 8.25920 8.49291 8.94952 9.00742 9.53970 11.06927 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014544 B = 0.002883 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.718574 B = 9709.101415 C =10692.668383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.169 4.169 3 C 0.136 3.864 4 N -0.590 5.590 5 C 0.217 3.783 6 C -0.528 4.528 7 H 0.075 0.925 8 C 0.072 3.928 9 N -0.898 5.898 10 Si 0.875 3.125 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.508 3.492 15 O -0.539 6.539 16 C -0.136 4.136 17 C -0.119 4.119 18 C 0.119 3.881 19 N -0.574 5.574 20 C 0.521 3.479 21 O -0.468 6.468 22 C 0.063 3.937 23 N -0.633 5.633 24 C 0.121 3.879 25 C 0.698 3.302 26 O -0.535 6.535 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.029 0.971 33 H 0.035 0.965 34 H 0.264 0.736 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.373 -17.525 -14.935 25.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.188 4.188 3 C 0.012 3.988 4 N -0.321 5.321 5 C 0.096 3.904 6 C -0.566 4.566 7 H 0.093 0.907 8 C -0.130 4.130 9 N -0.536 5.536 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.295 3.705 15 O -0.417 6.417 16 C -0.176 4.176 17 C -0.158 4.158 18 C -0.002 4.002 19 N -0.320 5.320 20 C 0.308 3.692 21 O -0.338 6.338 22 C -0.063 4.063 23 N -0.373 5.373 24 C -0.020 4.020 25 C 0.400 3.600 26 O -0.407 6.407 27 H 0.112 0.888 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.080 0.920 44 H 0.102 0.898 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.385 -17.114 -14.352 25.070 hybrid contribution -0.480 -0.307 0.849 1.022 sum 10.905 -17.421 -13.503 24.592 Atomic orbital electron populations 1.23843 0.95876 1.01816 1.00613 1.23463 0.96409 0.99103 0.99867 1.20615 0.93143 0.95293 0.89762 1.47900 1.10806 1.60421 1.12944 1.19638 0.94846 0.95126 0.80746 1.21339 1.41048 0.91164 1.03097 0.90731 1.24854 0.95310 0.94721 0.98118 1.69897 1.47845 1.06612 1.29263 0.86862 0.79870 0.79673 0.83374 1.19941 1.21074 1.19036 1.20298 0.82035 0.78373 0.89757 1.90673 1.52427 1.56363 1.42213 1.21583 0.96628 1.02098 0.97328 1.21652 0.95915 1.02428 0.95801 1.21804 0.77143 1.01401 0.99841 1.46424 1.09081 1.13169 1.63277 1.20860 0.90965 0.82089 0.75264 1.90834 1.60926 1.37498 1.44552 1.22507 0.93130 0.85965 1.04700 1.47488 1.06117 1.11713 1.72012 1.21520 0.78544 1.00219 1.01687 1.15897 0.80799 0.84793 0.78555 1.91014 1.85056 1.13669 1.51005 0.88758 0.88227 0.87676 0.89268 0.90303 0.95266 0.94671 0.92587 0.88837 0.89216 0.90715 0.90188 0.88364 0.88663 0.85975 0.86116 0.92031 0.89793 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 14.32 29.01 0.42 -1.82 16 2 C -0.17 -2.26 9.74 -36.02 -0.35 -2.61 16 3 C 0.14 2.13 5.65 -5.19 -0.03 2.10 16 4 N -0.59 -12.19 2.44 -176.44 -0.43 -12.62 16 5 C 0.22 5.41 4.23 -5.20 -0.02 5.39 16 6 C -0.53 -15.40 9.94 -34.44 -0.34 -15.74 16 7 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 8 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 9 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 10 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 11 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.30 6.54 56.52 0.37 -5.94 16 14 C 0.51 10.37 7.67 -10.98 -0.08 10.29 16 15 O -0.54 -13.48 15.56 5.56 0.09 -13.40 16 16 C -0.14 -1.91 4.25 -27.88 -0.12 -2.03 16 17 C -0.12 -1.68 4.83 -26.73 -0.13 -1.81 16 18 C 0.12 1.31 5.70 -4.04 -0.02 1.29 16 19 N -0.57 -6.45 2.60 -120.73 -0.31 -6.77 16 20 C 0.52 5.20 8.31 -10.56 -0.09 5.11 16 21 O -0.47 -5.93 17.76 5.60 0.10 -5.83 16 22 C 0.06 0.37 7.66 -4.32 -0.03 0.34 16 23 N -0.63 -5.11 3.42 -187.94 -0.64 -5.75 16 24 C 0.12 0.62 11.17 59.85 0.67 1.29 16 25 C 0.70 8.37 8.31 -88.02 -0.73 7.64 16 26 O -0.53 -8.37 17.15 5.33 0.09 -8.28 16 27 H 0.09 0.98 8.06 -52.49 -0.42 0.56 16 28 H 0.10 1.20 7.84 -52.49 -0.41 0.79 16 29 H 0.11 1.30 7.83 -52.49 -0.41 0.89 16 30 H 0.09 1.48 7.72 -51.93 -0.40 1.08 16 31 H 0.08 1.02 6.44 -51.93 -0.33 0.68 16 32 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 33 H 0.04 0.94 6.85 -51.93 -0.36 0.59 16 34 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 35 H 0.09 1.16 7.40 -51.93 -0.38 0.78 16 36 H 0.09 1.01 7.77 -51.93 -0.40 0.61 16 37 H 0.07 1.15 8.10 -51.92 -0.42 0.73 16 38 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 39 H 0.10 1.02 7.85 -51.93 -0.41 0.62 16 40 H 0.10 0.89 8.00 -51.93 -0.42 0.47 16 41 H 0.12 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.08 0.54 8.04 -51.93 -0.42 0.13 16 45 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 LS Contribution 384.45 15.07 5.79 5.79 Total: -1.00 -39.30 384.45 -7.03 -46.34 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -6.86 Total: -0.96 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: -0.97 Total: 11.46 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.61 Total: -52.44 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: 0.28 Total: -27.51 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -39.30 -7.03 -46.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292451621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.876 kcal (2) G-P(sol) polarization free energy of solvation -39.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds