Wall clock time and date at job start Tue Mar 31 2020 04:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34781 * 119.99548 * 2 1 4 4 O 1.21282 * 119.99914 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.00019 * 359.97438 * 3 2 1 6 6 C 1.53242 * 109.61893 * 180.02562 * 5 3 2 7 7 C 1.50591 * 109.16187 * 175.52207 * 6 5 3 8 8 O 1.21221 * 119.36135 * 150.90350 * 7 6 5 9 9 N 1.34146 * 121.27891 * 330.93202 * 7 6 5 10 10 C 1.34140 * 122.59074 * 0.79970 * 9 7 6 11 11 O 1.21223 * 119.36304 * 179.17621 * 10 9 7 12 12 C 1.50599 * 121.27273 * 358.91744 * 10 9 7 13 13 C 1.46493 * 120.00218 * 179.97438 * 2 1 3 14 14 C 1.53041 * 109.45928 * 60.02940 * 13 2 1 15 15 C 1.53197 * 109.30910 * 178.60030 * 14 13 2 16 16 N 1.46928 * 108.76742 * 54.65301 * 15 14 13 17 17 C 1.36935 * 120.62967 * 126.40113 * 16 15 14 18 18 H 1.08002 * 120.00030 * 332.61275 * 17 16 15 19 19 C 1.38812 * 120.00206 * 152.60840 * 17 16 15 20 20 N 1.31618 * 120.00237 * 159.34798 * 19 17 16 21 21 Si 1.86802 * 119.99512 * 339.34901 * 19 17 16 22 22 H 1.48500 * 109.46980 * 92.94271 * 21 19 17 23 23 H 1.48500 * 109.46862 * 212.93850 * 21 19 17 24 24 H 1.48496 * 109.47427 * 332.93787 * 21 19 17 25 25 C 1.46919 * 118.73722 * 306.38662 * 16 15 14 26 26 C 1.53041 * 109.46252 * 299.97419 * 13 2 1 27 27 H 1.09003 * 109.46908 * 90.00802 * 1 2 3 28 28 H 1.08997 * 109.46756 * 209.99928 * 1 2 3 29 29 H 1.08994 * 109.47461 * 330.00013 * 1 2 3 30 30 H 1.09000 * 109.61793 * 59.63546 * 5 3 2 31 31 H 1.09001 * 109.52461 * 55.62063 * 6 5 3 32 32 H 1.08998 * 109.57699 * 295.45772 * 6 5 3 33 33 H 0.97001 * 118.70329 * 180.51693 * 9 7 6 34 34 H 1.09000 * 109.74846 * 269.60388 * 12 10 9 35 35 H 1.08994 * 109.40506 * 149.35009 * 12 10 9 36 36 H 1.09005 * 109.45998 * 180.02562 * 13 2 1 37 37 H 1.08997 * 109.49400 * 298.56142 * 14 13 2 38 38 H 1.08995 * 109.49608 * 58.66470 * 14 13 2 39 39 H 1.09002 * 109.59959 * 294.86440 * 15 14 13 40 40 H 1.08999 * 109.69964 * 174.50489 * 15 14 13 41 41 H 0.96995 * 120.00153 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.58795 * 293.81405 * 25 16 15 43 43 H 1.09006 * 109.70034 * 173.46409 * 25 16 15 44 44 H 1.09005 * 109.49594 * 301.33634 * 26 13 2 45 45 H 1.08996 * 109.50047 * 61.43250 * 26 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1674 -0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3780 3.6397 -0.0011 7 6 1.6179 4.9349 -0.1127 8 8 2.0823 5.9409 0.3788 9 7 0.4364 4.9969 -0.7451 10 6 -0.1445 3.9215 -1.2978 11 8 -1.2208 4.0414 -1.8424 12 6 0.5173 2.5692 -1.2598 13 6 2.1976 -1.2686 0.0006 14 6 1.8282 -2.0712 -1.2491 15 6 2.6222 -3.3813 -1.2628 16 7 2.3852 -4.0909 0.0017 17 6 1.9523 -5.3900 0.0022 18 1 1.3735 -5.7666 -0.8283 19 6 2.2572 -6.2229 1.0699 20 7 1.5384 -7.3038 1.2877 21 14 3.6878 -5.8096 2.1978 22 1 3.1937 -5.0221 3.3558 23 1 4.3135 -7.0655 2.6841 24 1 4.6934 -5.0128 1.4502 25 6 2.6219 -3.3803 1.2656 26 6 1.8282 -2.0702 1.2509 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 0.7525 2.5299 0.8851 31 1 3.0559 3.5411 -0.8489 32 1 2.9509 3.6324 0.9261 33 1 -0.0175 5.8522 -0.8015 34 1 1.1420 2.4399 -2.1436 35 1 -0.2470 1.7926 -1.2361 36 1 3.2692 -1.0692 0.0009 37 1 0.7610 -2.2924 -1.2371 38 1 2.0699 -1.4902 -2.1391 39 1 3.6853 -3.1635 -1.3659 40 1 2.2937 -4.0013 -2.0969 41 1 1.7513 -7.8855 2.0340 42 1 3.6849 -3.1624 1.3688 43 1 2.2927 -3.9976 2.1015 44 1 2.0698 -1.4884 2.1405 45 1 0.7610 -2.2914 1.2391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006137436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:40:05 Heat of formation + Delta-G solvation = -75.542507 kcal Electronic energy + Delta-G solvation = -28349.841351 eV Core-core repulsion = 24368.337989 eV Total energy + Delta-G solvation = -3981.503362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.09976 -40.31402 -39.30031 -37.96421 -35.92533 -35.53500 -34.32515 -32.46644 -30.60471 -30.44381 -29.31549 -27.25668 -26.17141 -24.45533 -23.67788 -22.94152 -21.93266 -19.96361 -19.75730 -19.17432 -18.26172 -17.96844 -17.32367 -16.88372 -16.53319 -16.07435 -15.71489 -15.25088 -15.08263 -14.85118 -14.64129 -14.55587 -14.25413 -13.86517 -13.70465 -13.24998 -13.19815 -13.11078 -12.84858 -12.44699 -12.40006 -12.01815 -11.92138 -11.82741 -11.77011 -11.28485 -10.99190 -10.91772 -10.75272 -10.70789 -10.64274 -10.25958 -10.19317 -9.99528 -9.76985 -9.53723 -8.73310 -8.64934 -7.06401 -6.00675 -3.37229 0.98660 2.18340 2.24586 2.32657 2.75635 3.27613 3.41842 3.45745 3.48332 3.79039 3.90002 4.06671 4.37516 4.47773 4.49607 4.77825 4.85496 4.88517 4.95637 5.07748 5.10774 5.16446 5.27331 5.33870 5.36998 5.49144 5.52545 5.58292 5.71534 5.89915 5.95534 6.09250 6.19431 6.28589 6.30141 6.51008 6.53778 6.55392 6.57837 6.80047 6.83688 7.22352 7.30433 7.89207 7.90465 8.26751 8.87272 9.65788 10.02554 11.15134 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027228 B = 0.002883 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.090147 B = 9710.105745 C =10216.119813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.602 5.602 3 C 0.521 3.479 4 O -0.532 6.532 5 C -0.113 4.113 6 C -0.123 4.123 7 C 0.528 3.472 8 O -0.498 6.498 9 N -0.677 5.677 10 C 0.531 3.469 11 O -0.497 6.497 12 C -0.147 4.147 13 C 0.144 3.856 14 C -0.139 4.139 15 C 0.150 3.850 16 N -0.606 5.606 17 C -0.262 4.262 18 H 0.086 0.914 19 C 0.024 3.976 20 N -0.907 5.907 21 Si 0.881 3.119 22 H -0.288 1.288 23 H -0.303 1.303 24 H -0.270 1.270 25 C 0.129 3.871 26 C -0.140 4.140 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.413 0.587 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.025 0.975 40 H 0.067 0.933 41 H 0.263 0.737 42 H 0.027 0.973 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.113 21.802 -3.743 22.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.334 5.334 3 C 0.307 3.693 4 O -0.409 6.409 5 C -0.135 4.135 6 C -0.163 4.163 7 C 0.317 3.683 8 O -0.370 6.370 9 N -0.343 5.343 10 C 0.319 3.681 11 O -0.369 6.369 12 C -0.186 4.186 13 C 0.042 3.958 14 C -0.179 4.179 15 C 0.024 3.976 16 N -0.329 5.329 17 C -0.390 4.390 18 H 0.104 0.896 19 C -0.175 4.175 20 N -0.550 5.550 21 Si 0.711 3.289 22 H -0.216 1.216 23 H -0.231 1.231 24 H -0.195 1.195 25 C 0.002 3.998 26 C -0.181 4.181 27 H 0.082 0.918 28 H 0.103 0.897 29 H 0.088 0.912 30 H 0.131 0.869 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.253 0.747 34 H 0.139 0.861 35 H 0.147 0.853 36 H 0.117 0.883 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.045 0.955 43 H 0.094 0.906 44 H 0.075 0.925 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.707 21.989 -3.679 22.458 hybrid contribution 0.391 0.487 0.757 0.982 sum -2.316 22.476 -2.922 22.783 Atomic orbital electron populations 1.22025 0.79833 1.03763 1.02163 1.48101 1.07069 1.06194 1.72020 1.20013 0.87799 0.84625 0.76864 1.90742 1.13449 1.86982 1.49730 1.21500 0.97684 0.94165 1.00143 1.21789 0.97862 0.88036 1.08571 1.20974 0.79955 0.91832 0.75564 1.90811 1.65945 1.36867 1.43417 1.44915 1.22318 1.14058 1.52966 1.20789 0.84911 0.86337 0.76063 1.90823 1.20294 1.85675 1.40137 1.22248 1.01764 0.94677 0.99943 1.21219 0.97440 0.80917 0.96234 1.22364 1.01877 0.97750 0.95930 1.20891 0.96037 0.91043 0.89645 1.44392 1.78366 1.10848 0.99329 1.18910 1.27591 0.84956 1.07520 0.89608 1.25282 0.98352 0.95605 0.98246 1.69829 1.38700 1.15852 1.30630 0.86984 0.84971 0.76311 0.80589 1.21629 1.23085 1.19457 1.21313 0.96406 0.91557 0.90490 1.22395 1.02001 0.97604 0.96052 0.91805 0.89728 0.91223 0.86877 0.85888 0.85825 0.74740 0.86124 0.85254 0.88347 0.91492 0.92400 0.95722 0.91425 0.92707 0.95483 0.90588 0.92500 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 7.91 59.85 0.47 0.96 16 2 N -0.60 -6.33 2.76 -173.89 -0.48 -6.81 16 3 C 0.52 5.32 7.09 -10.98 -0.08 5.25 16 4 O -0.53 -7.44 15.28 5.56 0.08 -7.36 16 5 C -0.11 -0.71 1.82 -91.52 -0.17 -0.88 16 6 C -0.12 -0.82 4.70 -27.81 -0.13 -0.95 16 7 C 0.53 4.01 7.75 -11.32 -0.09 3.92 16 8 O -0.50 -5.55 17.87 5.61 0.10 -5.45 16 9 N -0.68 -4.36 5.09 -11.75 -0.06 -4.42 16 10 C 0.53 3.69 7.74 -11.32 -0.09 3.61 16 11 O -0.50 -5.13 17.87 5.61 0.10 -5.03 16 12 C -0.15 -0.78 4.98 -27.81 -0.14 -0.92 16 13 C 0.14 2.03 2.48 -67.89 -0.17 1.86 16 14 C -0.14 -1.99 5.34 -26.61 -0.14 -2.13 16 15 C 0.15 2.73 6.52 -3.71 -0.02 2.71 16 16 N -0.61 -13.51 2.77 -172.32 -0.48 -13.99 16 17 C -0.26 -6.99 10.03 -15.06 -0.15 -7.14 16 18 H 0.09 2.44 8.06 -52.49 -0.42 2.02 16 19 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 20 N -0.91 -27.08 13.97 55.49 0.78 -26.30 16 21 Si 0.88 21.79 24.35 -169.99 -4.14 17.65 16 22 H -0.29 -6.86 6.62 56.52 0.37 -6.48 16 23 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 24 H -0.27 -6.58 6.63 56.52 0.37 -6.21 16 25 C 0.13 2.64 4.20 -3.72 -0.02 2.62 16 26 C -0.14 -2.24 5.31 -26.61 -0.14 -2.38 16 27 H 0.06 0.40 7.07 -51.93 -0.37 0.03 16 28 H 0.08 0.73 6.46 -51.93 -0.34 0.40 16 29 H 0.07 0.35 5.98 -51.93 -0.31 0.04 16 30 H 0.11 0.54 7.39 -51.93 -0.38 0.16 16 31 H 0.12 0.79 7.99 -51.93 -0.41 0.37 16 32 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.41 2.39 8.79 -40.82 -0.36 2.03 16 34 H 0.12 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.13 0.61 4.80 -51.93 -0.25 0.36 16 36 H 0.10 1.58 6.90 -51.93 -0.36 1.23 16 37 H 0.07 0.96 7.72 -51.93 -0.40 0.56 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 1.22 7.93 -51.93 -0.41 0.81 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.03 0.57 7.07 -51.93 -0.37 0.20 16 43 H 0.08 1.73 4.50 -51.93 -0.23 1.49 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.07 1.09 6.72 -51.93 -0.35 0.74 16 LS Contribution 347.80 15.07 5.24 5.24 Total: -1.00 -34.35 347.80 -6.07 -40.42 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.27 Total: -1.05 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -0.95 Total: 7.11 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.24 Total: -51.53 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: 0.29 Total: -17.84 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.14 Total: 17.65 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.35 -6.07 -40.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006137436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.125 kcal (2) G-P(sol) polarization free energy of solvation -34.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds