Wall clock time and date at job start Tue Mar 31 2020 05:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47224 * 2 1 4 4 H 1.08994 * 109.52488 * 54.92210 * 3 2 1 5 5 C 1.53168 * 109.48121 * 294.84587 * 3 2 1 6 6 N 1.46919 * 108.77044 * 185.40475 * 5 3 2 7 7 C 1.34780 * 120.63560 * 233.58746 * 6 5 3 8 8 O 1.21281 * 119.99286 * 0.02743 * 7 6 5 9 9 C 1.50700 * 120.00258 * 180.02562 * 7 6 5 10 10 N 1.46494 * 109.47139 * 180.02562 * 9 7 6 11 11 C 1.36598 * 127.11917 * 265.02788 * 10 9 7 12 12 N 1.30333 * 107.28498 * 179.97438 * 11 10 9 13 13 N 1.28535 * 109.99153 * 359.97438 * 12 11 10 14 14 C 1.31034 * 109.85919 * 359.72194 * 13 12 11 15 15 O 1.35533 * 126.45281 * 180.29734 * 14 13 12 16 16 C 1.46927 * 118.73865 * 53.61242 * 6 5 3 17 17 C 1.53196 * 108.77648 * 306.39181 * 16 6 5 18 18 C 1.53043 * 109.49511 * 175.00539 * 3 2 1 19 19 H 1.08992 * 109.45900 * 301.31934 * 18 3 2 20 20 N 1.46496 * 109.46122 * 61.29842 * 18 3 2 21 21 C 1.36945 * 119.99718 * 205.02716 * 20 18 3 22 22 H 1.07997 * 119.99756 * 359.97438 * 21 20 18 23 23 C 1.38805 * 119.99878 * 179.97438 * 21 20 18 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 300.00154 * 25 23 21 28 28 H 1.48498 * 109.47018 * 60.00200 * 25 23 21 29 29 H 1.09006 * 109.46846 * 299.99530 * 1 2 3 30 30 H 1.09001 * 109.47667 * 59.99680 * 1 2 3 31 31 H 1.09001 * 109.47535 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46603 * 239.99976 * 2 1 3 33 33 H 1.08998 * 109.47029 * 120.00686 * 2 1 3 34 34 H 1.09003 * 109.58781 * 65.62342 * 5 3 2 35 35 H 1.09002 * 109.70713 * 305.26565 * 5 3 2 36 36 H 1.09000 * 109.46887 * 300.00628 * 9 7 6 37 37 H 1.09002 * 109.46721 * 59.99865 * 9 7 6 38 38 H 1.08007 * 126.35938 * 0.02935 * 11 10 9 39 39 H 0.96698 * 114.00233 * 270.17297 * 15 14 13 40 40 H 1.08997 * 109.58973 * 186.60156 * 16 6 5 41 41 H 1.09010 * 109.58802 * 66.17667 * 16 6 5 42 42 H 1.09003 * 109.49874 * 294.68509 * 17 16 6 43 43 H 1.08997 * 109.52434 * 174.59889 * 17 16 6 44 44 H 0.96996 * 120.00499 * 25.02446 * 20 18 3 45 45 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6048 1.9827 0.8407 5 6 1.6383 2.1263 -1.3103 6 7 2.2445 3.4639 -1.3507 7 6 1.4850 4.5559 -1.5682 8 8 0.2890 4.4397 -1.7323 9 6 2.1219 5.9212 -1.6073 10 7 1.0925 6.9333 -1.8560 11 6 0.7353 7.4669 -3.0616 12 7 -0.2168 8.3282 -2.8371 13 7 -0.4820 8.3724 -1.5802 14 6 0.2876 7.5322 -0.9330 15 8 0.2863 7.3041 0.4030 16 6 3.6947 3.5886 -1.1501 17 6 4.0735 2.8881 0.1586 18 6 3.5653 1.4449 0.1256 19 1 3.8546 0.9369 1.0455 20 7 4.1506 0.7474 -1.0220 21 6 5.3883 0.1711 -0.9145 22 1 5.9328 0.2312 0.0161 23 6 5.9427 -0.4902 -2.0017 24 7 5.2791 -0.5630 -3.1361 25 14 7.6312 -1.2756 -1.8553 26 1 7.9935 -1.9146 -3.1459 27 1 8.6344 -0.2336 -1.5195 28 1 7.6077 -2.3037 -0.7840 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 0.5529 2.2154 -1.3582 35 1 1.9942 1.5380 -2.1561 36 1 2.6067 6.1234 -0.6522 37 1 2.8638 5.9532 -2.4053 38 1 1.1620 7.2202 -4.0227 39 1 0.8869 7.8760 0.9002 40 1 3.9663 4.6426 -1.0923 41 1 4.2204 3.1188 -1.9815 42 1 3.6191 3.4147 0.9979 43 1 5.1575 2.8896 0.2720 44 1 3.6616 0.6937 -1.8580 45 1 5.6668 -1.0248 -3.8960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037839749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:46 Heat of formation + Delta-G solvation = 27.561681 kcal Electronic energy + Delta-G solvation = -28542.137164 eV Core-core repulsion = 24597.397486 eV Total energy + Delta-G solvation = -3944.739678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.19924 -40.32402 -38.13918 -37.86252 -35.02865 -34.66802 -33.85362 -31.85952 -30.04272 -29.77390 -29.36591 -27.98751 -25.05423 -23.97491 -23.62384 -22.71046 -22.50281 -20.97866 -20.19127 -19.05393 -18.54660 -17.66011 -17.32047 -17.15719 -16.06934 -15.92179 -15.62908 -15.34974 -14.76499 -14.62820 -14.36470 -14.13623 -13.80421 -13.60244 -13.40815 -13.22693 -12.76730 -12.63097 -12.58614 -12.40368 -11.94263 -11.78833 -11.54493 -11.24773 -11.10302 -10.99333 -10.92895 -10.84151 -10.45420 -10.44078 -10.38615 -10.29897 -9.93039 -9.73414 -9.67086 -9.35810 -9.04435 -8.49042 -7.10703 -5.90351 -3.19653 1.39046 1.80102 2.39232 2.61468 2.96519 3.33398 3.39185 3.40362 3.48799 4.16404 4.20222 4.38939 4.47127 4.55034 4.90318 5.03220 5.10489 5.18383 5.28776 5.35998 5.42327 5.47402 5.59289 5.62452 5.65547 5.67170 5.79060 5.91478 6.00128 6.03131 6.17947 6.21411 6.25294 6.30681 6.42142 6.45488 6.55487 6.61794 6.78093 6.86104 7.07867 7.37897 7.57259 8.00184 8.27854 8.46670 9.39746 9.94953 10.29915 11.31661 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017193 B = 0.003317 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.183299 B = 8439.161928 C = 9189.589389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.119 3.881 6 N -0.593 5.593 7 C 0.496 3.504 8 O -0.532 6.532 9 C 0.089 3.911 10 N -0.471 5.471 11 C 0.175 3.825 12 N -0.283 5.283 13 N -0.289 5.289 14 C 0.362 3.638 15 O -0.433 6.433 16 C 0.110 3.890 17 C -0.151 4.151 18 C 0.178 3.822 19 H 0.053 0.947 20 N -0.718 5.718 21 C -0.242 4.242 22 H 0.069 0.931 23 C -0.009 4.009 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.292 1.292 27 H -0.287 1.287 28 H -0.287 1.287 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.123 0.877 37 H 0.131 0.869 38 H 0.225 0.775 39 H 0.403 0.597 40 H 0.066 0.934 41 H 0.091 0.909 42 H 0.049 0.951 43 H 0.077 0.923 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.254 12.098 5.341 13.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.085 0.915 5 C -0.002 4.002 6 N -0.326 5.326 7 C 0.281 3.719 8 O -0.409 6.409 9 C -0.038 4.038 10 N -0.174 5.174 11 C -0.112 4.112 12 N -0.123 5.123 13 N -0.139 5.139 14 C 0.058 3.942 15 O -0.232 6.232 16 C -0.012 4.012 17 C -0.192 4.192 18 C 0.068 3.932 19 H 0.070 0.930 20 N -0.361 5.361 21 C -0.373 4.373 22 H 0.087 0.913 23 C -0.205 4.205 24 N -0.579 5.579 25 Si 0.736 3.264 26 H -0.218 1.218 27 H -0.213 1.213 28 H -0.213 1.213 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.141 0.859 37 H 0.149 0.851 38 H 0.241 0.759 39 H 0.260 0.740 40 H 0.084 0.916 41 H 0.110 0.890 42 H 0.068 0.932 43 H 0.096 0.904 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.183 12.529 5.064 14.474 hybrid contribution 2.462 -1.350 0.274 2.822 sum -2.721 11.179 5.338 12.683 Atomic orbital electron populations 1.21859 0.96747 1.01152 1.01360 1.21416 0.94322 0.95578 1.03475 1.21746 0.97405 0.96294 0.96818 0.91529 1.21751 0.98868 0.80987 0.98641 1.48113 1.08764 1.06479 1.69231 1.20382 0.87395 0.85895 0.78258 1.90776 1.14420 1.85968 1.49721 1.21806 0.89381 0.86038 1.06530 1.46522 1.29753 1.32247 1.08834 1.26382 0.98386 0.95934 0.90493 1.74205 1.12570 1.18120 1.07436 1.74593 1.21167 1.18457 0.99704 1.22089 0.92660 0.94843 0.84650 1.84988 1.66104 1.62215 1.09886 1.21840 0.78855 0.99738 1.00814 1.22540 1.02049 0.99511 0.95069 1.20217 0.89659 0.90551 0.92811 0.92951 1.42469 1.19111 1.64014 1.10490 1.19159 0.93597 1.27408 0.97114 0.91284 1.24703 0.98559 1.01264 0.96005 1.69633 1.38204 1.47851 1.02252 0.86317 0.84229 0.79226 0.76658 1.21766 1.21338 1.21327 0.93352 0.92845 0.93051 0.90438 0.91906 0.89522 0.90376 0.85872 0.85069 0.75858 0.74003 0.91581 0.89032 0.93218 0.90446 0.78110 0.93392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.67 37.16 0.36 -1.66 16 2 C -0.11 -1.65 5.19 -26.73 -0.14 -1.79 16 3 C -0.10 -1.52 2.14 -90.51 -0.19 -1.71 16 4 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 5 C 0.12 1.82 5.02 -3.73 -0.02 1.80 16 6 N -0.59 -7.99 2.97 -172.78 -0.51 -8.50 16 7 C 0.50 6.64 7.77 -10.98 -0.09 6.55 16 8 O -0.53 -9.48 15.84 5.56 0.09 -9.39 16 9 C 0.09 0.78 5.04 -5.20 -0.03 0.75 16 10 N -0.47 -5.19 2.29 -121.04 -0.28 -5.46 16 11 C 0.18 1.93 12.79 -89.08 -1.14 0.79 16 12 N -0.28 -4.08 12.18 29.87 0.36 -3.71 16 13 N -0.29 -4.42 12.22 29.65 0.36 -4.05 16 14 C 0.36 4.67 9.22 -88.76 -0.82 3.85 16 15 O -0.43 -4.55 13.62 -18.29 -0.25 -4.80 16 16 C 0.11 1.36 6.08 -3.71 -0.02 1.34 16 17 C -0.15 -2.07 5.78 -26.60 -0.15 -2.22 16 18 C 0.18 2.96 2.53 -67.89 -0.17 2.78 16 19 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 20 N -0.72 -15.09 3.72 -53.39 -0.20 -15.29 16 21 C -0.24 -5.89 9.93 -15.06 -0.15 -6.04 16 22 H 0.07 1.65 7.83 -52.49 -0.41 1.24 16 23 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 24 N -0.93 -25.67 13.06 55.49 0.72 -24.95 16 25 Si 0.90 20.73 29.55 -169.99 -5.02 15.71 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 28 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.71 6.70 -51.93 -0.35 0.36 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.36 7.70 -51.93 -0.40 0.96 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.39 5.72 -51.93 -0.30 1.09 16 35 H 0.08 1.34 6.65 -51.93 -0.35 0.99 16 36 H 0.12 0.76 7.69 -51.93 -0.40 0.36 16 37 H 0.13 0.74 7.94 -51.93 -0.41 0.33 16 38 H 0.23 1.46 8.06 -52.48 -0.42 1.04 16 39 H 0.40 1.69 9.06 45.56 0.41 2.11 16 40 H 0.07 0.56 5.93 -51.93 -0.31 0.25 16 41 H 0.09 1.40 7.74 -51.92 -0.40 1.00 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.38 8.72 5.95 -40.82 -0.24 8.47 16 45 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 365.65 15.07 5.51 5.51 Total: -1.00 -34.30 365.65 -7.53 -41.83 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -5.67 Total: 8.98 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -2.65 Total: 4.12 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: 0.46 Total: -61.97 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.16 Total: -14.18 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.30 -7.53 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037839749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.396 kcal (2) G-P(sol) polarization free energy of solvation -34.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds