Wall clock time and date at job start Tue Mar 31 2020 04:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34619 * 124.46898 * 2 1 4 4 O 1.21280 * 124.90769 * 359.55864 * 3 2 1 5 5 C 1.51282 * 110.15118 * 179.53644 * 3 2 1 6 6 C 1.54636 * 104.19330 * 343.77181 * 5 3 2 7 7 C 1.46758 * 124.34793 * 179.97438 * 2 1 3 8 8 H 1.08998 * 110.24703 * 316.11626 * 7 2 1 9 9 C 1.50700 * 110.25079 * 78.03190 * 7 2 1 10 10 O 1.21279 * 119.99629 * 17.37084 * 9 7 2 11 11 N 1.34776 * 120.00418 * 197.37041 * 9 7 2 12 12 C 1.44962 * 117.33594 * 357.59866 * 11 9 7 13 13 C 1.51961 * 111.93624 * 203.73175 * 12 11 9 14 14 O 1.41320 * 111.60936 * 319.69992 * 13 12 11 15 15 C 1.40847 * 118.30702 * 56.89474 * 14 13 12 16 16 H 1.09004 * 109.54229 * 187.73862 * 15 14 13 17 17 C 1.53928 * 110.45988 * 68.19202 * 15 14 13 18 18 N 1.46768 * 107.62121 * 221.67152 * 17 15 14 19 19 C 1.36942 * 125.36392 * 178.66052 * 18 17 15 20 20 H 1.07996 * 120.00043 * 179.69586 * 19 18 17 21 21 C 1.38812 * 119.99803 * 359.69533 * 19 18 17 22 22 N 1.31616 * 120.00089 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99989 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46965 * 60.00301 * 23 21 19 25 25 H 1.48502 * 109.47036 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.46968 * 300.00649 * 23 21 19 27 27 C 1.46873 * 109.27444 * 358.40153 * 18 17 15 28 28 C 1.44547 * 117.33813 * 177.58106 * 11 9 7 29 29 H 1.08997 * 109.64662 * 285.98814 * 28 11 9 30 30 H 1.08996 * 109.47362 * 270.02170 * 1 2 3 31 31 H 1.09001 * 109.46896 * 30.02471 * 1 2 3 32 32 H 1.09001 * 109.47147 * 150.01840 * 1 2 3 33 33 H 1.09002 * 110.48962 * 225.09305 * 5 3 2 34 34 H 1.08998 * 110.60048 * 102.50152 * 5 3 2 35 35 H 1.09001 * 110.96855 * 266.67910 * 6 5 3 36 36 H 1.08999 * 110.96863 * 142.91606 * 6 5 3 37 37 H 1.08998 * 108.99150 * 324.36689 * 12 11 9 38 38 H 1.09003 * 108.98260 * 83.10172 * 12 11 9 39 39 H 1.08994 * 109.05607 * 80.25241 * 13 12 11 40 40 H 1.09002 * 109.05008 * 199.22438 * 13 12 11 41 41 H 1.09003 * 109.95408 * 102.07702 * 17 15 14 42 42 H 1.09000 * 109.70232 * 341.12394 * 17 15 14 43 43 H 0.97001 * 120.00479 * 180.02562 * 22 21 19 44 44 H 1.09002 * 110.06611 * 137.29211 * 27 18 17 45 45 H 1.09005 * 110.06712 * 258.81419 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2269 1.1098 0.0000 4 8 1.7997 2.2449 -0.0077 5 6 3.6927 0.7358 0.0115 6 6 3.7013 -0.7508 0.4373 7 6 2.2930 -1.2117 0.0005 8 1 1.8973 -1.9387 0.7098 9 6 2.3453 -1.8084 -1.3823 10 8 2.0295 -1.1397 -2.3435 11 7 2.7429 -3.0851 -1.5509 12 6 3.1580 -3.8146 -0.3689 13 6 4.0914 -4.9641 -0.7100 14 8 3.6812 -5.6372 -1.8830 15 6 3.5439 -4.8896 -3.0687 16 1 3.0940 -5.5120 -3.8422 17 6 4.9199 -4.4097 -3.5645 18 7 4.7691 -3.0226 -4.0198 19 6 5.7769 -2.2349 -4.5089 20 1 5.5670 -1.2238 -4.8250 21 6 7.0683 -2.7362 -4.5983 22 7 7.3240 -3.9686 -4.2135 23 14 8.4429 -1.6620 -5.2662 24 1 8.5852 -0.4539 -4.4146 25 1 9.7162 -2.4262 -5.2589 26 1 8.1199 -1.2523 -6.6565 27 6 3.3658 -2.6143 -3.8739 28 6 2.7202 -3.6154 -2.8953 29 1 1.6904 -3.8089 -3.1956 30 1 -0.3634 0.0004 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 4.2358 1.3431 0.7355 34 1 4.1255 0.8504 -0.9823 35 1 3.8260 -0.8469 1.5159 36 1 4.4753 -1.3043 -0.0942 37 1 3.6699 -3.1309 0.3082 38 1 2.2745 -4.2115 0.1312 39 1 5.0981 -4.5733 -0.8577 40 1 4.1027 -5.6714 0.1193 41 1 5.2565 -5.0355 -4.3911 42 1 5.6408 -4.4545 -2.7481 43 1 8.2264 -4.3188 -4.2757 44 1 3.3104 -1.6047 -3.4668 45 1 2.8616 -2.6570 -4.8394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083172367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:37:54 Heat of formation + Delta-G solvation = -43.295787 kcal Electronic energy + Delta-G solvation = -29996.705739 eV Core-core repulsion = 26016.600699 eV Total energy + Delta-G solvation = -3980.105040 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.41611 -40.05891 -38.30804 -36.40493 -35.75069 -34.99459 -32.92806 -32.40379 -30.07153 -28.91983 -27.96602 -26.92213 -26.77279 -24.66293 -23.35496 -22.84717 -21.32761 -20.08697 -19.44454 -18.58460 -17.85886 -17.18428 -16.73230 -16.64381 -15.98668 -15.62600 -15.34676 -15.11057 -14.88621 -14.68931 -14.10545 -13.97466 -13.84871 -13.67535 -13.50758 -12.99546 -12.97052 -12.61038 -12.44647 -12.35870 -12.16990 -11.96189 -11.64091 -11.49913 -11.28072 -11.12350 -10.95161 -10.70736 -10.66209 -10.50068 -10.14650 -9.87261 -9.75701 -9.57339 -9.16287 -8.68088 -8.58368 -8.31920 -6.83784 -5.74534 -3.07901 2.46147 2.54968 2.74053 3.13510 3.38811 3.43519 3.44728 4.01086 4.18546 4.24668 4.28316 4.47867 4.62428 4.77655 4.89680 5.02041 5.07660 5.09965 5.15367 5.24809 5.34963 5.38658 5.48249 5.54516 5.60715 5.61959 5.66110 5.68967 5.79579 5.81142 5.91875 6.01416 6.22168 6.28242 6.43955 6.76952 6.93970 7.08741 7.32791 7.39688 7.49055 7.68941 7.83710 8.08629 8.20287 8.26601 9.19223 9.79402 10.42491 11.36608 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012591 B = 0.005230 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.219663 B = 5352.427766 C = 6617.930500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.603 5.603 3 C 0.528 3.472 4 O -0.532 6.532 5 C -0.154 4.154 6 C -0.123 4.123 7 C 0.114 3.886 8 H 0.109 0.891 9 C 0.494 3.506 10 O -0.510 6.510 11 N -0.580 5.580 12 C 0.073 3.927 13 C 0.058 3.942 14 O -0.369 6.369 15 C 0.067 3.933 16 H 0.110 0.890 17 C 0.152 3.848 18 N -0.601 5.601 19 C -0.224 4.224 20 H 0.077 0.923 21 C -0.008 4.008 22 N -0.924 5.924 23 Si 0.911 3.089 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.111 3.889 28 C 0.111 3.889 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.103 0.897 41 H 0.050 0.950 42 H 0.056 0.944 43 H 0.253 0.747 44 H 0.085 0.915 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.137 -1.320 13.667 17.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.336 5.336 3 C 0.316 3.684 4 O -0.409 6.409 5 C -0.194 4.194 6 C -0.161 4.161 7 C 0.006 3.994 8 H 0.127 0.873 9 C 0.280 3.720 10 O -0.385 6.385 11 N -0.314 5.314 12 C -0.051 4.051 13 C -0.019 4.019 14 O -0.286 6.286 15 C 0.009 3.991 16 H 0.128 0.872 17 C 0.027 3.973 18 N -0.329 5.329 19 C -0.352 4.352 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.572 5.572 23 Si 0.741 3.259 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.015 4.015 28 C 0.007 3.993 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.121 0.879 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.102 0.898 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -10.432 -0.616 13.095 16.754 hybrid contribution 0.808 0.498 -0.483 1.065 sum -9.625 -0.118 12.612 15.865 Atomic orbital electron populations 1.21515 0.77679 1.03531 1.01351 1.47863 1.06341 1.05969 1.73476 1.20897 0.89232 0.84085 0.74167 1.90704 1.78862 1.20875 1.50415 1.22349 0.94620 0.96791 1.05682 1.22641 0.94403 0.96166 1.02928 1.21672 0.93708 0.88733 0.95297 0.87347 1.20896 0.78244 0.81676 0.91228 1.90648 1.46884 1.60191 1.40764 1.46596 1.65010 1.12316 1.07466 1.21762 0.99570 0.96158 0.87564 1.22215 0.97423 0.93984 0.88308 1.86881 1.88220 1.36784 1.16759 1.22958 0.98649 0.91291 0.86252 0.87229 1.21691 0.90309 0.86073 0.99233 1.44225 1.02925 1.10430 1.75290 1.19001 0.86653 0.94881 1.34638 0.90512 1.24768 0.97300 0.96684 1.01597 1.69931 1.19752 1.14346 1.53194 0.86210 0.81461 0.79262 0.78921 1.21205 1.21591 1.21152 1.22069 0.85803 0.99012 0.94628 1.21704 0.99446 0.96448 0.81705 0.91135 0.92516 0.90497 0.91208 0.87570 0.86990 0.88578 0.88013 0.89848 0.91634 0.91855 0.87882 0.93148 0.92577 0.93712 0.89757 0.95805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.08 10.96 59.85 0.66 1.73 16 2 N -0.60 -7.67 2.56 -173.97 -0.45 -8.12 16 3 C 0.53 7.83 8.03 -10.77 -0.09 7.74 16 4 O -0.53 -9.73 17.60 5.56 0.10 -9.63 16 5 C -0.15 -1.86 6.85 -26.74 -0.18 -2.04 16 6 C -0.12 -1.21 5.56 -25.10 -0.14 -1.35 16 7 C 0.11 1.26 2.54 -68.17 -0.17 1.09 16 8 H 0.11 0.85 7.31 -51.93 -0.38 0.47 16 9 C 0.49 7.44 6.32 -10.99 -0.07 7.37 16 10 O -0.51 -9.68 13.47 5.56 0.07 -9.61 16 11 N -0.58 -8.60 3.09 -168.83 -0.52 -9.12 16 12 C 0.07 0.81 5.51 -5.39 -0.03 0.78 16 13 C 0.06 0.75 6.72 36.63 0.25 1.00 16 14 O -0.37 -6.05 10.24 -34.44 -0.35 -6.40 16 15 C 0.07 1.23 3.82 -26.39 -0.10 1.12 16 16 H 0.11 1.86 8.14 -51.93 -0.42 1.43 16 17 C 0.15 3.54 5.03 -3.41 -0.02 3.52 16 18 N -0.60 -15.06 3.39 -171.43 -0.58 -15.65 16 19 C -0.22 -6.19 10.25 -15.06 -0.15 -6.34 16 20 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 21 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 22 N -0.92 -26.38 10.26 55.49 0.57 -25.81 16 23 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 C 0.11 2.40 6.29 -3.23 -0.02 2.38 16 28 C 0.11 1.96 3.41 -68.51 -0.23 1.73 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.91 7.93 -51.93 -0.41 0.50 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.10 1.12 7.24 -51.93 -0.38 0.75 16 37 H 0.08 0.73 5.20 -51.93 -0.27 0.46 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.97 6.84 -51.93 -0.35 0.62 16 40 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.05 1.32 7.50 -51.93 -0.39 0.93 16 42 H 0.06 1.43 5.75 -51.93 -0.30 1.13 16 43 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 44 H 0.08 1.96 4.82 -52.36 -0.25 1.71 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 348.41 15.07 5.25 5.25 Total: -1.00 -35.10 348.41 -7.84 -42.94 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.51 Total: 0.75 kcal Atomic # 6 Polarization: 18.83 SS G_CDS: -0.40 Total: 18.43 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: -0.98 Total: -58.69 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.18 Total: -25.64 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.10 -7.84 -42.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083172367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.356 kcal (2) G-P(sol) polarization free energy of solvation -35.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds