Wall clock time and date at job start Tue Mar 31 2020 04:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34619 * 124.46898 * 2 1 4 4 O 1.21280 * 124.90769 * 359.55864 * 3 2 1 5 5 C 1.51282 * 110.15118 * 179.53644 * 3 2 1 6 6 C 1.54636 * 104.19330 * 343.77181 * 5 3 2 7 7 C 1.46758 * 124.34793 * 179.97438 * 2 1 3 8 8 H 1.08998 * 110.24703 * 316.11626 * 7 2 1 9 9 C 1.50700 * 110.25079 * 78.03190 * 7 2 1 10 10 O 1.21279 * 119.99629 * 17.37084 * 9 7 2 11 11 N 1.34776 * 120.00418 * 197.37041 * 9 7 2 12 12 C 1.44962 * 117.33594 * 357.59866 * 11 9 7 13 13 C 1.51961 * 111.93624 * 203.73175 * 12 11 9 14 14 O 1.41320 * 111.60936 * 319.69992 * 13 12 11 15 15 C 1.40847 * 118.30702 * 56.89474 * 14 13 12 16 16 H 1.09004 * 109.54229 * 187.73862 * 15 14 13 17 17 C 1.53928 * 110.45988 * 68.19202 * 15 14 13 18 18 N 1.46768 * 107.62121 * 221.67152 * 17 15 14 19 19 C 1.36942 * 125.36392 * 178.66052 * 18 17 15 20 20 H 1.07996 * 120.00043 * 179.69586 * 19 18 17 21 21 C 1.38812 * 119.99803 * 359.69533 * 19 18 17 22 22 N 1.31616 * 120.00089 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99989 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46965 * 60.00301 * 23 21 19 25 25 H 1.48502 * 109.47036 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.46968 * 300.00649 * 23 21 19 27 27 C 1.46873 * 109.27444 * 358.40153 * 18 17 15 28 28 C 1.44547 * 117.33813 * 177.58106 * 11 9 7 29 29 H 1.08997 * 109.64662 * 285.98814 * 28 11 9 30 30 H 1.08996 * 109.47362 * 270.02170 * 1 2 3 31 31 H 1.09001 * 109.46896 * 30.02471 * 1 2 3 32 32 H 1.09001 * 109.47147 * 150.01840 * 1 2 3 33 33 H 1.09002 * 110.48962 * 225.09305 * 5 3 2 34 34 H 1.08998 * 110.60048 * 102.50152 * 5 3 2 35 35 H 1.09001 * 110.96855 * 266.67910 * 6 5 3 36 36 H 1.08999 * 110.96863 * 142.91606 * 6 5 3 37 37 H 1.08998 * 108.99150 * 324.36689 * 12 11 9 38 38 H 1.09003 * 108.98260 * 83.10172 * 12 11 9 39 39 H 1.08994 * 109.05607 * 80.25241 * 13 12 11 40 40 H 1.09002 * 109.05008 * 199.22438 * 13 12 11 41 41 H 1.09003 * 109.95408 * 102.07702 * 17 15 14 42 42 H 1.09000 * 109.70232 * 341.12394 * 17 15 14 43 43 H 0.97001 * 120.00479 * 180.02562 * 22 21 19 44 44 H 1.09002 * 110.06611 * 137.29211 * 27 18 17 45 45 H 1.09005 * 110.06712 * 258.81419 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2269 1.1098 0.0000 4 8 1.7997 2.2449 -0.0077 5 6 3.6927 0.7358 0.0115 6 6 3.7013 -0.7508 0.4373 7 6 2.2930 -1.2117 0.0005 8 1 1.8973 -1.9387 0.7098 9 6 2.3453 -1.8084 -1.3823 10 8 2.0295 -1.1397 -2.3435 11 7 2.7429 -3.0851 -1.5509 12 6 3.1580 -3.8146 -0.3689 13 6 4.0914 -4.9641 -0.7100 14 8 3.6812 -5.6372 -1.8830 15 6 3.5439 -4.8896 -3.0687 16 1 3.0940 -5.5120 -3.8422 17 6 4.9199 -4.4097 -3.5645 18 7 4.7691 -3.0226 -4.0198 19 6 5.7769 -2.2349 -4.5089 20 1 5.5670 -1.2238 -4.8250 21 6 7.0683 -2.7362 -4.5983 22 7 7.3240 -3.9686 -4.2135 23 14 8.4429 -1.6620 -5.2662 24 1 8.5852 -0.4539 -4.4146 25 1 9.7162 -2.4262 -5.2589 26 1 8.1199 -1.2523 -6.6565 27 6 3.3658 -2.6143 -3.8739 28 6 2.7202 -3.6154 -2.8953 29 1 1.6904 -3.8089 -3.1956 30 1 -0.3634 0.0004 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 4.2358 1.3431 0.7355 34 1 4.1255 0.8504 -0.9823 35 1 3.8260 -0.8469 1.5159 36 1 4.4753 -1.3043 -0.0942 37 1 3.6699 -3.1309 0.3082 38 1 2.2745 -4.2115 0.1312 39 1 5.0981 -4.5733 -0.8577 40 1 4.1027 -5.6714 0.1193 41 1 5.2565 -5.0355 -4.3911 42 1 5.6408 -4.4545 -2.7481 43 1 8.2264 -4.3188 -4.2757 44 1 3.3104 -1.6047 -3.4668 45 1 2.8616 -2.6570 -4.8394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083172367.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:37:53 Heat of formation + Delta-G solvation = -69.620108 kcal Electronic energy + Delta-G solvation = -29997.847247 eV Core-core repulsion = 26016.600699 eV Total energy + Delta-G solvation = -3981.246548 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.56291 -41.25784 -39.58810 -37.75637 -37.20708 -36.21284 -34.35378 -33.74077 -31.67889 -30.08524 -29.53130 -28.34908 -27.64502 -26.47546 -24.61611 -23.88705 -22.76332 -21.56331 -20.61699 -19.81969 -19.19547 -18.57899 -18.25225 -17.73979 -17.25904 -16.86228 -16.66219 -16.55251 -16.10622 -15.99055 -15.70670 -15.21946 -15.05070 -14.84200 -14.72631 -14.30153 -14.14522 -13.85461 -13.75728 -13.61275 -13.46669 -13.25208 -12.99002 -12.86364 -12.80161 -12.53870 -12.38063 -12.28339 -12.16597 -12.05949 -11.82746 -11.63713 -11.02626 -10.90537 -10.73774 -10.48959 -9.73916 -9.54512 -8.89079 -7.87969 -5.23700 1.34063 1.42207 1.42929 1.45228 1.51753 1.72426 2.09364 2.45537 2.79757 3.20062 3.27641 3.30197 3.37671 3.59574 3.71692 3.76869 3.83077 3.96327 4.09092 4.13524 4.25846 4.29334 4.34676 4.42522 4.48666 4.56788 4.61587 4.74222 4.77089 4.80267 4.86981 4.91149 4.95385 5.03746 5.08606 5.37638 5.39772 5.49297 5.62166 5.66207 5.91208 6.16348 6.23977 6.46147 6.99067 7.07138 7.11976 7.73974 8.35392 9.20533 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012591 B = 0.005230 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.219663 B = 5352.427766 C = 6617.930500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.601 5.601 3 C 0.516 3.484 4 O -0.579 6.579 5 C -0.156 4.156 6 C -0.113 4.113 7 C 0.120 3.880 8 H 0.161 0.839 9 C 0.488 3.512 10 O -0.559 6.559 11 N -0.583 5.583 12 C 0.066 3.934 13 C 0.049 3.951 14 O -0.372 6.372 15 C 0.086 3.914 16 H 0.122 0.878 17 C 0.164 3.836 18 N -0.616 5.616 19 C -0.243 4.243 20 H 0.068 0.932 21 C -0.054 4.054 22 N -0.944 5.944 23 Si 0.973 3.027 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.283 1.283 27 C 0.109 3.891 28 C 0.125 3.875 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.128 0.872 34 H 0.084 0.916 35 H 0.145 0.855 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.030 0.970 40 H 0.148 0.852 41 H 0.010 0.990 42 H 0.030 0.970 43 H 0.249 0.751 44 H 0.070 0.930 45 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.972 -2.414 16.779 20.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.333 5.333 3 C 0.305 3.695 4 O -0.459 6.459 5 C -0.196 4.196 6 C -0.151 4.151 7 C 0.012 3.988 8 H 0.178 0.822 9 C 0.276 3.724 10 O -0.438 6.438 11 N -0.316 5.316 12 C -0.055 4.055 13 C -0.028 4.028 14 O -0.289 6.289 15 C 0.026 3.974 16 H 0.139 0.861 17 C 0.038 3.962 18 N -0.344 5.344 19 C -0.372 4.372 20 H 0.086 0.914 21 C -0.247 4.247 22 N -0.593 5.593 23 Si 0.801 3.199 24 H -0.204 1.204 25 H -0.214 1.214 26 H -0.209 1.209 27 C -0.017 4.017 28 C 0.019 3.981 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.146 0.854 34 H 0.102 0.898 35 H 0.163 0.837 36 H 0.108 0.892 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.049 0.951 40 H 0.166 0.834 41 H 0.028 0.972 42 H 0.048 0.952 43 H 0.058 0.942 44 H 0.088 0.912 45 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -11.288 -1.758 16.245 19.860 hybrid contribution 1.069 0.827 -1.474 2.000 sum -10.218 -0.931 14.771 17.985 Atomic orbital electron populations 1.21679 0.76675 1.03007 1.03161 1.48042 1.07232 1.06015 1.71998 1.21392 0.90554 0.83949 0.73591 1.90668 1.79822 1.22729 1.52665 1.22369 0.92978 0.99308 1.04936 1.22745 0.93075 0.93605 1.05653 1.21938 0.94613 0.88806 0.93407 0.82194 1.21716 0.76916 0.81242 0.92521 1.90633 1.49128 1.61218 1.42828 1.46736 1.64784 1.12782 1.07316 1.22145 1.01233 0.95770 0.86387 1.22574 0.96237 0.95895 0.88075 1.86888 1.88077 1.37006 1.16953 1.22619 0.95268 0.91807 0.87670 0.86072 1.21446 0.93157 0.84748 0.96839 1.44434 1.03842 1.11053 1.75041 1.19232 0.87888 0.95072 1.35020 0.91364 1.25500 0.99238 0.97929 1.02075 1.70139 1.19744 1.15559 1.53849 0.85250 0.78550 0.77850 0.78261 1.20391 1.21387 1.20932 1.22111 0.84402 0.99770 0.95381 1.21379 0.99494 0.94422 0.82765 0.89373 0.89426 0.92694 0.90136 0.85353 0.89770 0.83672 0.89220 0.86957 0.87209 0.95115 0.83423 0.97206 0.95201 0.94196 0.91193 0.97040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.84 10.96 127.77 1.40 3.24 16 2 N -0.60 -13.93 2.56 -822.80 -2.11 -16.04 16 3 C 0.52 14.93 8.03 87.87 0.71 15.64 16 4 O -0.58 -21.53 17.60 -3.03 -0.05 -21.58 16 5 C -0.16 -3.57 6.85 30.59 0.21 -3.36 16 6 C -0.11 -1.79 5.56 31.65 0.18 -1.61 16 7 C 0.12 2.18 2.54 44.70 0.11 2.29 16 8 H 0.16 1.37 7.31 -2.39 -0.02 1.35 16 9 C 0.49 13.70 6.32 87.66 0.55 14.25 16 10 O -0.56 -21.31 13.47 -3.03 -0.04 -21.35 16 11 N -0.58 -15.75 3.09 -806.45 -2.49 -18.24 16 12 C 0.07 1.14 5.51 86.33 0.48 1.62 16 13 C 0.05 1.10 6.72 71.64 0.48 1.58 16 14 O -0.37 -11.38 10.24 -146.16 -1.50 -12.87 16 15 C 0.09 3.07 3.82 30.81 0.12 3.19 16 16 H 0.12 4.02 8.14 -2.38 -0.02 4.00 16 17 C 0.16 7.88 5.03 86.64 0.44 8.31 16 18 N -0.62 -32.09 3.39 -696.28 -2.36 -34.45 16 19 C -0.24 -13.98 10.25 84.03 0.86 -13.11 16 20 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 21 C -0.05 -3.06 5.48 84.86 0.47 -2.59 16 22 N -0.94 -55.61 10.26 21.65 0.22 -55.39 16 23 Si 0.97 46.09 29.55 68.60 2.03 48.11 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 25 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 26 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 27 C 0.11 4.85 6.29 86.70 0.55 5.40 16 28 C 0.12 4.27 3.41 45.65 0.16 4.42 16 29 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.05 1.30 7.93 -2.39 -0.02 1.28 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.15 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 1.72 7.24 -2.39 -0.02 1.70 16 37 H 0.11 1.31 5.20 -2.39 -0.01 1.30 16 38 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.03 0.91 6.84 -2.39 -0.02 0.89 16 40 H 0.15 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.01 0.54 7.50 -2.39 -0.02 0.52 16 42 H 0.03 1.58 5.75 -2.39 -0.01 1.57 16 43 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 44 H 0.07 3.39 4.82 -9.25 -0.04 3.34 16 45 H 0.01 0.54 8.14 -2.38 -0.02 0.53 16 Total: -1.00 -83.46 348.41 1.38 -82.08 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.97 Total: 10.45 kcal Atomic # 6 Polarization: 32.57 SS G_CDS: 6.70 Total: 39.27 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -6.73 Total: -124.11 kcal Atomic # 8 Polarization: -54.22 SS G_CDS: -1.59 Total: -55.81 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -83.46 1.38 -82.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083172367.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.465 kcal (2) G-P(sol) polarization free energy of solvation -83.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds