Wall clock time and date at job start Tue Mar 31 2020 05:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99878 * 2 1 4 4 H 1.48498 * 109.47153 * 239.99757 * 3 2 1 5 5 H 1.48498 * 109.47281 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46920 * 120.00121 * 3 2 1 7 7 C 1.38810 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99608 * 159.29873 * 7 2 1 9 9 N 1.36935 * 120.00128 * 339.28919 * 7 2 1 10 10 C 1.46498 * 119.99952 * 321.79819 * 9 7 2 11 11 C 1.52999 * 109.47210 * 269.99778 * 10 9 7 12 12 O 1.42892 * 109.46942 * 65.00300 * 11 10 9 13 13 C 1.46495 * 119.99970 * 141.79820 * 9 7 2 14 14 C 1.53041 * 109.46355 * 64.77825 * 13 9 7 15 15 C 1.53192 * 109.31502 * 178.62809 * 14 13 9 16 16 N 1.46921 * 108.77334 * 54.63659 * 15 14 13 17 17 C 1.34779 * 120.63145 * 126.36868 * 16 15 14 18 18 O 1.21282 * 119.99987 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00219 * 179.97438 * 17 16 15 20 20 C 1.50702 * 109.47199 * 179.97438 * 19 17 16 21 21 N 1.33233 * 125.52556 * 269.69534 * 20 19 17 22 22 C 1.30839 * 109.82980 * 179.85542 * 21 20 19 23 23 N 1.34438 * 108.07312 * 0.40182 * 22 21 20 24 24 H 0.96998 * 126.82303 * 179.79026 * 23 22 21 25 25 N 1.30713 * 125.52522 * 90.00051 * 20 19 17 26 26 C 1.46922 * 118.74147 * 306.64192 * 16 15 14 27 27 C 1.52762 * 109.00975 * 53.30712 * 26 16 15 28 28 H 0.97001 * 120.00170 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.47244 * 30.00026 * 10 9 7 30 30 H 1.09002 * 109.46991 * 149.99801 * 10 9 7 31 31 H 1.09008 * 109.46643 * 185.00153 * 11 10 9 32 32 H 1.08997 * 109.47098 * 304.99763 * 11 10 9 33 33 H 0.96698 * 113.99913 * 179.97438 * 12 11 10 34 34 H 1.08997 * 109.46159 * 184.75371 * 13 9 7 35 35 H 1.09001 * 109.49520 * 58.67547 * 14 13 9 36 36 H 1.09000 * 109.52089 * 298.59829 * 14 13 9 37 37 H 1.08999 * 109.58672 * 294.84797 * 15 14 13 38 38 H 1.08998 * 109.69860 * 174.49053 * 15 14 13 39 39 H 1.08997 * 109.46870 * 300.00297 * 19 17 16 40 40 H 1.08996 * 109.46971 * 60.00022 * 19 17 16 41 41 H 1.07998 * 125.96531 * 180.19223 * 22 21 20 42 42 H 1.09001 * 109.59069 * 173.14552 * 26 16 15 43 43 H 1.09002 * 109.58417 * 293.57205 * 26 16 15 44 44 H 1.09000 * 109.56663 * 185.55091 * 27 26 16 45 45 H 1.09003 * 109.38367 * 65.51787 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0379 -1.2321 -0.3312 9 7 1.3919 -2.3499 0.4183 10 6 0.4659 -2.3109 1.5529 11 6 1.2383 -2.5578 2.8503 12 8 2.1531 -1.4827 3.0719 13 6 1.6564 -3.6168 -0.2681 14 6 3.1238 -4.0053 -0.0739 15 6 3.3883 -5.3472 -0.7639 16 7 2.9717 -5.2465 -2.1692 17 6 3.8255 -5.5629 -3.1629 18 8 4.9496 -5.9353 -2.9010 19 6 3.3830 -5.4549 -4.5995 20 6 4.5159 -5.8622 -5.5060 21 7 5.4404 -5.0432 -6.0056 22 6 6.2773 -5.7198 -6.7498 23 7 5.8910 -7.0074 -6.7468 24 1 6.3175 -7.7434 -7.2129 25 7 4.7476 -7.0753 -5.9341 26 6 1.6086 -4.7885 -2.4709 27 6 1.3622 -3.4582 -1.7616 28 1 -0.4850 0.8400 -0.0004 29 1 -0.0145 -1.3334 1.5964 30 1 -0.2930 -3.0835 1.4292 31 1 0.5385 -2.6172 3.6840 32 1 1.7903 -3.4944 2.7719 33 1 2.6777 -1.5728 3.8792 34 1 1.0166 -4.3953 0.1473 35 1 3.3385 -4.0953 0.9910 36 1 3.7643 -3.2391 -0.5107 37 1 2.8163 -6.1318 -0.2685 38 1 4.4513 -5.5829 -0.7139 39 1 2.5292 -6.1113 -4.7669 40 1 3.0976 -4.4254 -4.8153 41 1 7.1278 -5.3140 -7.2773 42 1 1.4983 -4.6533 -3.5469 43 1 0.8886 -5.5267 -2.1176 44 1 0.3231 -3.1588 -1.8980 45 1 2.0186 -2.6967 -2.1827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098528459.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:26 Heat of formation + Delta-G solvation = 32.036078 kcal Electronic energy + Delta-G solvation = -28149.938564 eV Core-core repulsion = 24205.392911 eV Total energy + Delta-G solvation = -3944.545654 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.22337 -39.85690 -37.52674 -36.09606 -34.54267 -33.47967 -32.11509 -31.72921 -30.77933 -30.33134 -28.86834 -27.55245 -24.80134 -23.32334 -22.93944 -22.66184 -21.26761 -20.39018 -19.76249 -18.73348 -18.35521 -17.23376 -16.52652 -16.15565 -15.81071 -15.50363 -15.19992 -14.83732 -14.78367 -14.37082 -13.70511 -13.68174 -13.58696 -13.23656 -13.04727 -12.92305 -12.49812 -12.27858 -12.16031 -11.95133 -11.75785 -11.47597 -11.10545 -10.87035 -10.67193 -10.59662 -10.48690 -10.29677 -10.15780 -9.97673 -9.95303 -9.87472 -9.82084 -9.52356 -9.39168 -9.01262 -8.34287 -8.30127 -6.44825 -5.65166 -3.21445 1.47001 2.48873 2.69346 2.81346 3.32730 3.49945 3.53743 3.61031 3.96848 4.48837 4.61450 4.69970 4.79338 5.19478 5.22818 5.28913 5.32824 5.44084 5.48700 5.58937 5.60487 5.77138 5.84190 6.01670 6.05558 6.07034 6.13528 6.19173 6.24054 6.33602 6.45244 6.52003 6.67616 6.74142 6.80683 6.85959 6.90612 7.16059 7.24054 7.63655 7.71565 7.95053 7.96866 8.35793 8.52487 8.70329 9.31290 9.95214 10.50335 11.36410 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017134 B = 0.003205 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.774313 B = 8733.798695 C = 9499.468964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.019 3.981 3 Si 0.895 3.105 4 H -0.285 1.285 5 H -0.294 1.294 6 H -0.282 1.282 7 C -0.233 4.233 8 H 0.054 0.946 9 N -0.571 5.571 10 C 0.142 3.858 11 C 0.060 3.940 12 O -0.542 6.542 13 C 0.177 3.823 14 C -0.140 4.140 15 C 0.116 3.884 16 N -0.602 5.602 17 C 0.525 3.475 18 O -0.543 6.543 19 C -0.050 4.050 20 C 0.255 3.745 21 N -0.532 5.532 22 C 0.261 3.739 23 N -0.486 5.486 24 H 0.440 0.560 25 N -0.307 5.307 26 C 0.104 3.896 27 C -0.134 4.134 28 H 0.251 0.749 29 H 0.101 0.899 30 H 0.036 0.964 31 H 0.017 0.983 32 H 0.021 0.979 33 H 0.348 0.652 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.116 0.884 40 H 0.125 0.875 41 H 0.222 0.778 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.244 -13.621 -8.721 17.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.180 4.180 3 Si 0.725 3.275 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.209 1.209 7 C -0.362 4.362 8 H 0.071 0.929 9 N -0.290 5.290 10 C 0.016 3.984 11 C -0.020 4.020 12 O -0.343 6.343 13 C 0.070 3.930 14 C -0.180 4.180 15 C -0.007 4.007 16 N -0.336 5.336 17 C 0.311 3.689 18 O -0.421 6.421 19 C -0.093 4.093 20 C -0.029 4.029 21 N -0.259 5.259 22 C -0.038 4.038 23 N -0.205 5.205 24 H 0.285 0.715 25 N -0.137 5.137 26 C -0.019 4.019 27 C -0.174 4.174 28 H 0.061 0.939 29 H 0.119 0.881 30 H 0.055 0.945 31 H 0.035 0.965 32 H 0.040 0.960 33 H 0.191 0.809 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.134 0.866 40 H 0.143 0.857 41 H 0.238 0.762 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.959 -13.668 -8.890 17.042 hybrid contribution 1.213 0.317 0.226 1.274 sum 6.172 -13.352 -8.663 17.071 Atomic orbital electron populations 1.69944 1.05537 1.25483 1.52870 1.25008 0.94838 0.98366 0.99769 0.86512 0.79250 0.83650 0.78105 1.21143 1.22046 1.20861 1.18663 0.93226 0.85171 1.39180 0.92877 1.43697 1.51419 1.03223 1.30682 1.21026 0.90602 1.03191 0.83595 1.23080 0.91292 0.88516 0.99122 1.86880 1.55673 1.46437 1.45267 1.20325 0.92498 0.89214 0.91008 1.22405 1.00770 0.95212 0.99658 1.21655 1.00999 0.98306 0.79715 1.48084 1.13727 1.65360 1.06388 1.20054 0.85000 0.77322 0.86526 1.90686 1.19797 1.47302 1.84322 1.19969 0.94099 1.05361 0.89844 1.23362 0.96135 0.86646 0.96734 1.70390 1.06012 1.34758 1.14782 1.26078 0.99190 0.81775 0.96776 1.48072 1.22857 1.10227 1.39301 0.71479 1.77955 1.02375 1.21432 1.11910 1.21886 0.81891 0.97609 1.00476 1.22196 1.02967 0.94611 0.97610 0.93871 0.88119 0.94538 0.96472 0.96049 0.80937 0.93622 0.91715 0.91374 0.92165 0.89892 0.86580 0.85743 0.76153 0.90442 0.91627 0.90612 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.31 11.47 55.49 0.64 -24.67 16 2 C 0.02 0.53 4.97 -17.43 -0.09 0.45 16 3 Si 0.89 22.37 29.60 -169.99 -5.03 17.34 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.23 -6.15 7.60 -15.06 -0.11 -6.27 16 8 H 0.05 1.47 7.09 -52.49 -0.37 1.10 16 9 N -0.57 -13.26 2.34 -165.62 -0.39 -13.64 16 10 C 0.14 3.20 5.70 -4.04 -0.02 3.18 16 11 C 0.06 1.17 7.39 37.16 0.27 1.45 16 12 O -0.54 -11.47 13.13 -35.23 -0.46 -11.93 16 13 C 0.18 3.38 2.60 -67.89 -0.18 3.20 16 14 C -0.14 -2.52 5.38 -26.61 -0.14 -2.66 16 15 C 0.12 1.81 6.44 -3.71 -0.02 1.79 16 16 N -0.60 -9.12 2.98 -173.04 -0.52 -9.64 16 17 C 0.52 8.45 7.69 -10.98 -0.08 8.37 16 18 O -0.54 -10.75 15.45 5.56 0.09 -10.66 16 19 C -0.05 -0.65 4.68 -29.03 -0.14 -0.79 16 20 C 0.25 3.68 6.63 -156.86 -1.04 2.64 16 21 N -0.53 -7.50 11.19 -11.97 -0.13 -7.63 16 22 C 0.26 2.45 13.13 -90.64 -1.19 1.26 16 23 N -0.49 -4.51 7.45 29.53 0.22 -4.29 16 24 H 0.44 2.19 8.96 -182.34 -1.63 0.55 16 25 N -0.31 -4.19 12.80 32.42 0.41 -3.78 16 26 C 0.10 1.40 6.31 -3.93 -0.02 1.37 16 27 C -0.13 -2.37 5.21 -26.83 -0.14 -2.51 16 28 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.10 2.66 5.54 -51.93 -0.29 2.37 16 30 H 0.04 0.75 7.88 -51.93 -0.41 0.34 16 31 H 0.02 0.30 8.14 -51.92 -0.42 -0.13 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.35 5.44 9.12 45.56 0.42 5.86 16 34 H 0.05 0.81 7.77 -51.93 -0.40 0.41 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.07 1.41 7.24 -51.93 -0.38 1.04 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.39 7.00 -51.93 -0.36 1.02 16 39 H 0.12 1.17 7.95 -51.93 -0.41 0.76 16 40 H 0.12 1.46 7.68 -51.93 -0.40 1.06 16 41 H 0.22 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.08 0.85 5.93 -51.93 -0.31 0.54 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 45 H 0.07 1.51 7.61 -51.93 -0.40 1.11 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -37.13 366.45 -9.60 -46.73 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.04 Total: 5.18 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: -2.91 Total: 11.47 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: 0.23 Total: -63.65 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.38 Total: -22.59 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.34 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.13 -9.60 -46.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098528459.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.770 kcal (2) G-P(sol) polarization free energy of solvation -37.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds