Wall clock time and date at job start Tue Mar 31 2020 04:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00236 * 2 1 4 4 H 1.48497 * 109.47378 * 272.91476 * 3 2 1 5 5 H 1.48507 * 109.47056 * 32.91534 * 3 2 1 6 6 H 1.48496 * 109.47188 * 152.91306 * 3 2 1 7 7 C 1.38809 * 119.99591 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00486 * 339.35753 * 7 2 1 9 9 N 1.36940 * 119.99764 * 159.35197 * 7 2 1 10 10 C 1.46925 * 120.63205 * 152.61394 * 9 7 2 11 11 C 1.53191 * 108.77360 * 126.41370 * 10 9 7 12 12 C 1.53042 * 109.31373 * 54.64105 * 11 10 9 13 13 H 1.09002 * 109.46278 * 178.63126 * 12 11 10 14 14 N 1.46498 * 109.46038 * 58.64985 * 12 11 10 15 15 C 1.34772 * 119.99597 * 85.00322 * 14 12 11 16 16 O 1.21286 * 120.00282 * 0.02562 * 15 14 12 17 17 C 1.50700 * 119.99885 * 179.97438 * 15 14 12 18 18 C 1.52999 * 109.47285 * 180.02562 * 17 15 14 19 19 C 1.52995 * 109.47335 * 179.97438 * 18 17 15 20 20 N 1.46508 * 109.47437 * 180.02562 * 19 18 17 21 21 C 1.35308 * 125.86702 * 125.00435 * 20 19 18 22 22 C 1.35351 * 106.17156 * 180.02562 * 21 20 19 23 23 N 1.33774 * 106.49996 * 0.02562 * 22 21 20 24 24 N 1.28637 * 108.88285 * 359.97438 * 23 22 21 25 25 C 1.53047 * 109.53163 * 298.63262 * 12 11 10 26 26 H 1.09002 * 109.49774 * 301.40870 * 25 12 11 27 27 O 1.42903 * 109.49433 * 181.31808 * 25 12 11 28 28 C 1.46928 * 120.63071 * 332.64076 * 9 7 2 29 29 H 0.97000 * 119.99737 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.58495 * 6.63402 * 10 9 7 31 31 H 1.08998 * 109.70854 * 246.27448 * 10 9 7 32 32 H 1.09005 * 109.50231 * 294.68540 * 11 10 9 33 33 H 1.09004 * 109.52689 * 174.60810 * 11 10 9 34 34 H 0.97000 * 119.99836 * 265.00559 * 14 12 11 35 35 H 1.09000 * 109.47136 * 60.00075 * 17 15 14 36 36 H 1.08996 * 109.47466 * 300.00166 * 17 15 14 37 37 H 1.09000 * 109.47055 * 59.99924 * 18 17 15 38 38 H 1.09002 * 109.47350 * 300.00266 * 18 17 15 39 39 H 1.09000 * 109.47171 * 60.00564 * 19 18 17 40 40 H 1.08996 * 109.47608 * 300.00182 * 19 18 17 41 41 H 1.07997 * 126.91709 * 0.02562 * 21 20 19 42 42 H 1.08000 * 126.75374 * 179.97438 * 22 21 20 43 43 H 0.96697 * 113.99849 * 180.02562 * 27 25 12 44 44 H 1.08994 * 109.58274 * 353.37477 * 28 9 7 45 45 H 1.09006 * 109.58566 * 113.79605 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4361 2.0820 -1.3982 5 1 1.4798 2.6341 0.7608 6 1 3.5772 1.4230 0.6375 7 6 2.0101 -1.2022 0.0005 8 1 1.5221 -2.1073 0.3307 9 7 3.3135 -1.2405 -0.4176 10 6 4.2349 -2.2631 0.0963 11 6 4.8751 -2.9908 -1.0900 12 6 5.5291 -1.9658 -2.0195 13 1 6.0064 -2.4828 -2.8519 14 7 6.5359 -1.2048 -1.2755 15 6 7.7861 -1.6907 -1.1436 16 8 8.0777 -2.7577 -1.6411 17 6 8.8220 -0.9077 -0.3788 18 6 10.1453 -1.6756 -0.3800 19 6 11.1971 -0.8804 0.3958 20 7 12.4645 -1.6155 0.3941 21 6 13.6584 -1.1361 -0.0251 22 6 14.5493 -2.1405 0.1469 23 7 13.8657 -3.1717 0.6557 24 7 12.6333 -2.8284 0.7904 25 6 4.4624 -1.0095 -2.5580 26 1 3.6998 -1.5778 -3.0906 27 8 5.0689 -0.0718 -3.4496 28 6 3.8174 -0.2594 -1.3884 29 1 -0.4850 0.8401 -0.0004 30 1 3.6837 -2.9770 0.7084 31 1 5.0115 -1.7897 0.6969 32 1 4.1087 -3.5405 -1.6365 33 1 5.6314 -3.6862 -0.7258 34 1 6.3027 -0.3513 -0.8779 35 1 8.4850 -0.7655 0.6480 36 1 8.9656 0.0637 -0.8518 37 1 10.4821 -1.8175 -1.4070 38 1 10.0020 -2.6473 0.0928 39 1 10.8607 -0.7383 1.4228 40 1 11.3404 0.0910 -0.0773 41 1 13.8599 -0.1505 -0.4179 42 1 15.6043 -2.1148 -0.0824 43 1 4.4499 0.5668 -3.8293 44 1 2.9909 0.3489 -1.7556 45 1 4.5599 0.3797 -0.9102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099876565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:55 Heat of formation + Delta-G solvation = 38.103788 kcal Electronic energy + Delta-G solvation = -27576.791810 eV Core-core repulsion = 23632.509272 eV Total energy + Delta-G solvation = -3944.282538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.48819 -40.14944 -38.33858 -36.13799 -35.60341 -34.29168 -32.95699 -32.06395 -31.29445 -30.43972 -29.34534 -27.82668 -25.41374 -23.76867 -23.02892 -22.85010 -21.79661 -21.45339 -20.59302 -19.05150 -18.15643 -17.17634 -17.02647 -16.94856 -16.62746 -16.03006 -15.66936 -15.35599 -15.21609 -14.65374 -14.51877 -14.31638 -14.00688 -13.83089 -13.59795 -13.14042 -12.86235 -12.75057 -12.40080 -12.36133 -12.20406 -11.90497 -11.86288 -11.60742 -11.32562 -11.16844 -11.11935 -11.05731 -10.61151 -10.41031 -10.40054 -9.97900 -9.81103 -9.69707 -9.66815 -9.59828 -8.86335 -8.75550 -7.15959 -6.10057 -3.47686 1.32488 2.01632 2.33380 2.70973 3.13285 3.25127 3.32007 3.35045 3.99353 4.21681 4.25125 4.33446 4.36535 4.49561 4.70647 4.76396 4.80945 4.86989 4.93526 4.98331 5.10526 5.20100 5.26074 5.37412 5.40790 5.49694 5.60836 5.62772 5.70639 5.82928 5.91248 5.94048 6.12520 6.24712 6.26579 6.26851 6.37502 6.51914 6.60766 6.76388 7.62894 7.70123 7.86207 8.18071 8.25638 8.31918 8.76427 9.54627 9.90106 11.05595 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022758 B = 0.002517 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.039807 B =11123.218474 C =11299.458310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.023 3.977 3 Si 0.884 3.116 4 H -0.290 1.290 5 H -0.302 1.302 6 H -0.272 1.272 7 C -0.263 4.263 8 H 0.089 0.911 9 N -0.600 5.600 10 C 0.149 3.851 11 C -0.146 4.146 12 C 0.165 3.835 13 H 0.084 0.916 14 N -0.709 5.709 15 C 0.514 3.486 16 O -0.546 6.546 17 C -0.139 4.139 18 C -0.116 4.116 19 C 0.113 3.887 20 N -0.288 5.288 21 C -0.053 4.053 22 C -0.055 4.055 23 N -0.275 5.275 24 N -0.079 5.079 25 C 0.076 3.924 26 H 0.073 0.927 27 O -0.572 6.572 28 C 0.099 3.901 29 H 0.264 0.736 30 H 0.067 0.933 31 H 0.024 0.976 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.401 0.599 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.190 0.810 42 H 0.189 0.811 43 H 0.377 0.623 44 H 0.078 0.922 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.826 3.916 -2.202 22.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.176 4.176 3 Si 0.715 3.285 4 H -0.218 1.218 5 H -0.230 1.230 6 H -0.197 1.197 7 C -0.391 4.391 8 H 0.106 0.894 9 N -0.325 5.325 10 C 0.023 3.977 11 C -0.186 4.186 12 C 0.060 3.940 13 H 0.102 0.898 14 N -0.360 5.360 15 C 0.300 3.700 16 O -0.424 6.424 17 C -0.180 4.180 18 C -0.155 4.155 19 C -0.008 4.008 20 N -0.082 5.082 21 C -0.204 4.204 22 C -0.212 4.212 23 N -0.141 5.141 24 N -0.059 5.059 25 C 0.015 3.985 26 H 0.091 0.909 27 O -0.376 6.376 28 C -0.027 4.027 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.237 0.763 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.121 0.879 40 H 0.126 0.874 41 H 0.207 0.793 42 H 0.206 0.794 43 H 0.224 0.776 44 H 0.096 0.904 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 21.683 1.647 -1.787 21.819 hybrid contribution 0.121 2.996 -0.460 3.034 sum 21.803 4.643 -2.247 22.405 Atomic orbital electron populations 1.69832 1.05713 1.26684 1.52347 1.25319 0.95267 0.97599 0.99444 0.86946 0.79982 0.84727 0.76858 1.21797 1.22981 1.19692 1.18937 0.84780 0.94950 1.40470 0.89386 1.44293 1.08884 1.33355 1.45989 1.20939 0.92212 0.91273 0.93258 1.22406 0.99987 0.97551 0.98653 1.20830 0.87508 0.91662 0.94001 0.89765 1.46001 1.10254 1.24431 1.55317 1.20363 0.82951 0.86232 0.80488 1.90709 1.80258 1.22606 1.48833 1.21551 0.93990 1.00065 1.02389 1.21582 0.92019 1.00058 1.01808 1.22246 0.79683 0.94811 1.04055 1.47553 1.09564 1.10674 1.40379 1.23718 0.85448 1.03190 1.08023 1.23645 1.01783 0.90392 1.05408 1.75153 0.97624 1.25251 1.16057 1.78358 1.13521 0.95881 1.18127 1.22775 0.93941 0.90802 0.91004 0.90902 1.86431 1.39884 1.47588 1.63716 1.22003 0.97659 0.92853 0.90222 0.92611 0.91467 0.95792 0.90643 0.91225 0.76311 0.88254 0.88554 0.90209 0.88996 0.87905 0.87431 0.79313 0.79435 0.77586 0.90420 0.95344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.35 13.97 55.49 0.78 -25.57 16 2 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 3 Si 0.88 20.64 24.34 -169.99 -4.14 16.50 16 4 H -0.29 -6.41 6.62 56.52 0.37 -6.04 16 5 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.27 -6.12 6.64 56.52 0.38 -5.74 16 7 C -0.26 -6.87 10.03 -15.06 -0.15 -7.02 16 8 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 9 N -0.60 -12.93 2.77 -172.32 -0.48 -13.41 16 10 C 0.15 2.71 6.26 -3.71 -0.02 2.69 16 11 C -0.15 -2.36 5.77 -26.61 -0.15 -2.51 16 12 C 0.16 2.60 2.47 -67.89 -0.17 2.43 16 13 H 0.08 1.42 7.58 -51.93 -0.39 1.02 16 14 N -0.71 -9.87 4.16 -53.76 -0.22 -10.09 16 15 C 0.51 6.84 7.79 -10.99 -0.09 6.76 16 16 O -0.55 -9.32 15.64 5.55 0.09 -9.23 16 17 C -0.14 -1.15 5.70 -27.88 -0.16 -1.31 16 18 C -0.12 -1.01 4.63 -26.73 -0.12 -1.13 16 19 C 0.11 0.67 6.46 -4.04 -0.03 0.64 16 20 N -0.29 -2.60 3.44 -61.26 -0.21 -2.81 16 21 C -0.05 -0.37 11.57 -17.05 -0.20 -0.57 16 22 C -0.05 -0.48 12.05 -17.74 -0.21 -0.69 16 23 N -0.28 -3.54 12.41 30.24 0.38 -3.16 16 24 N -0.08 -1.01 12.91 60.35 0.78 -0.23 16 25 C 0.08 1.24 3.36 -26.61 -0.09 1.15 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 27 O -0.57 -8.40 13.21 -35.23 -0.47 -8.87 16 28 C 0.10 1.90 3.53 -3.71 -0.01 1.89 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.07 1.25 7.93 -51.93 -0.41 0.83 16 31 H 0.02 0.42 7.74 -51.93 -0.40 0.02 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.40 5.29 6.87 -40.82 -0.28 5.01 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 38 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 39 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.11 0.29 8.07 -51.93 -0.42 -0.13 16 41 H 0.19 0.50 8.06 -52.49 -0.42 0.08 16 42 H 0.19 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.38 4.30 9.08 45.56 0.41 4.71 16 44 H 0.08 1.64 4.50 -51.93 -0.23 1.41 16 45 H 0.03 0.53 5.57 -51.93 -0.29 0.24 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -35.33 362.92 -5.37 -40.70 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -5.85 Total: 7.84 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -1.49 Total: 2.87 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 1.02 Total: -55.28 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.38 Total: -18.10 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.14 Total: 16.50 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.33 -5.37 -40.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099876565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.806 kcal (2) G-P(sol) polarization free energy of solvation -35.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds