Wall clock time and date at job start Tue Mar 31 2020 05:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99475 * 2 1 4 4 H 1.48497 * 109.47248 * 272.91196 * 3 2 1 5 5 H 1.48502 * 109.47553 * 32.91271 * 3 2 1 6 6 H 1.48503 * 109.46916 * 152.91206 * 3 2 1 7 7 C 1.38812 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00087 * 339.35687 * 7 2 1 9 9 N 1.36939 * 119.99775 * 159.36388 * 7 2 1 10 10 C 1.46922 * 120.63185 * 152.60181 * 9 7 2 11 11 C 1.53186 * 108.77468 * 126.41104 * 10 9 7 12 12 C 1.53040 * 109.31578 * 54.63919 * 11 10 9 13 13 H 1.08999 * 109.45119 * 58.64093 * 12 11 10 14 14 N 1.46499 * 109.46538 * 178.61484 * 12 11 10 15 15 C 1.34774 * 119.99661 * 275.06790 * 14 12 11 16 16 O 1.21279 * 120.00070 * 359.97438 * 15 14 12 17 17 C 1.50707 * 120.00001 * 180.02562 * 15 14 12 18 18 C 1.52995 * 109.47030 * 179.97438 * 17 15 14 19 19 C 1.53007 * 109.46987 * 179.97438 * 18 17 15 20 20 N 1.46496 * 109.47222 * 180.02562 * 19 18 17 21 21 C 1.35311 * 125.87156 * 124.99651 * 20 19 18 22 22 C 1.35349 * 106.17624 * 179.97438 * 21 20 19 23 23 N 1.33774 * 106.49896 * 0.02562 * 22 21 20 24 24 N 1.28634 * 108.88235 * 359.73754 * 23 22 21 25 25 C 1.53049 * 109.53389 * 298.63234 * 12 11 10 26 26 H 1.08992 * 109.49710 * 301.41485 * 25 12 11 27 27 O 1.42900 * 109.49496 * 181.31484 * 25 12 11 28 28 C 1.46926 * 120.62865 * 332.62433 * 9 7 2 29 29 H 0.96998 * 120.00686 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.58797 * 246.19823 * 10 9 7 31 31 H 1.08998 * 109.58500 * 6.48277 * 10 9 7 32 32 H 1.08996 * 109.50173 * 294.68477 * 11 10 9 33 33 H 1.09003 * 109.50083 * 174.58469 * 11 10 9 34 34 H 0.96995 * 120.00079 * 95.06252 * 14 12 11 35 35 H 1.08998 * 109.47076 * 59.99163 * 17 15 14 36 36 H 1.08999 * 109.46588 * 299.99551 * 17 15 14 37 37 H 1.08998 * 109.47824 * 59.99683 * 18 17 15 38 38 H 1.08999 * 109.47119 * 299.99288 * 18 17 15 39 39 H 1.08998 * 109.47065 * 59.99258 * 19 18 17 40 40 H 1.08999 * 109.46642 * 299.99620 * 19 18 17 41 41 H 1.07999 * 126.91064 * 359.97438 * 21 20 19 42 42 H 1.07998 * 126.75150 * 180.02562 * 22 21 20 43 43 H 0.96701 * 113.99926 * 180.02562 * 27 25 12 44 44 H 1.09002 * 109.58818 * 113.79831 * 28 9 7 45 45 H 1.09007 * 109.58750 * 353.37462 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4359 2.0821 -1.3982 5 1 1.4796 2.6342 0.7607 6 1 3.5770 1.4233 0.6376 7 6 2.0102 -1.2021 -0.0005 8 1 1.5222 -2.1076 0.3288 9 7 3.3137 -1.2400 -0.4185 10 6 4.2351 -2.2629 0.0947 11 6 4.8756 -2.9895 -1.0920 12 6 5.5295 -1.9638 -2.0206 13 1 6.2783 -1.3979 -1.4664 14 7 6.1717 -2.6578 -3.1396 15 6 7.4220 -3.1421 -3.0038 16 8 8.0157 -3.0030 -1.9555 17 6 8.0829 -3.8556 -4.1551 18 6 9.4869 -4.3007 -3.7409 19 6 10.1576 -5.0257 -4.9095 20 7 11.5017 -5.4525 -4.5127 21 6 11.9833 -6.7154 -4.5752 22 6 13.2549 -6.6572 -4.1153 23 7 13.4858 -5.3784 -3.7976 24 7 12.4292 -4.6895 -4.0496 25 6 4.4628 -1.0072 -2.5586 26 1 3.7004 -1.5752 -3.0916 27 8 5.0693 -0.0688 -3.4494 28 6 3.8176 -0.2581 -1.3884 29 1 -0.4851 0.8400 0.0004 30 1 5.0114 -1.7876 0.6944 31 1 3.6844 -2.9757 0.7084 32 1 4.1093 -3.5389 -1.6389 33 1 5.6320 -3.6847 -0.7277 34 1 5.6969 -2.7689 -3.9781 35 1 8.1529 -3.1812 -5.0085 36 1 7.4908 -4.7286 -4.4295 37 1 9.4173 -4.9750 -2.8873 38 1 10.0788 -3.4275 -3.4668 39 1 10.2271 -4.3518 -5.7633 40 1 9.5655 -5.8990 -5.1832 41 1 11.4585 -7.5933 -4.9222 42 1 13.9470 -7.4811 -4.0229 43 1 4.4504 0.5700 -3.8288 44 1 4.5598 0.3807 -0.9097 45 1 2.9910 0.3504 -1.7554 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099876567.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:05 Heat of formation + Delta-G solvation = 35.892766 kcal Electronic energy + Delta-G solvation = -27110.222810 eV Core-core repulsion = 23165.844394 eV Total energy + Delta-G solvation = -3944.378415 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.52437 -40.05515 -38.33715 -36.20201 -35.57783 -34.53712 -33.01200 -32.19816 -31.32942 -30.30911 -29.30598 -27.93200 -25.21946 -23.67097 -23.06771 -22.84865 -21.77926 -21.38344 -20.33524 -19.76677 -18.15599 -17.24028 -16.96541 -16.90940 -16.52215 -16.31122 -16.00842 -15.27380 -15.02357 -14.73943 -14.40526 -14.28222 -14.05960 -13.75166 -13.50770 -13.00852 -12.91301 -12.80052 -12.44656 -12.35019 -12.23949 -12.17668 -11.92827 -11.45891 -11.38216 -11.16078 -11.06294 -10.95507 -10.57264 -10.44207 -10.41651 -10.03498 -9.79159 -9.70626 -9.68789 -9.55510 -8.90707 -8.73556 -7.13335 -6.06599 -3.44093 1.28607 1.97300 2.30182 2.63906 3.15500 3.20061 3.41415 3.44946 3.93874 4.17949 4.22251 4.29903 4.41675 4.42504 4.66474 4.68898 4.80598 4.84753 4.89932 4.91344 5.10429 5.18805 5.22781 5.32338 5.37928 5.54766 5.57084 5.69859 5.74520 5.78739 5.87319 5.96168 6.18272 6.20048 6.22904 6.33482 6.44264 6.51212 6.62792 6.75667 7.54689 7.72663 7.88595 8.20960 8.22075 8.25615 8.80009 9.58635 9.94489 11.08853 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.034103 B = 0.002156 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.848348 B =12982.094703 C =13149.652302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.024 3.976 3 Si 0.881 3.119 4 H -0.290 1.290 5 H -0.301 1.301 6 H -0.269 1.269 7 C -0.263 4.263 8 H 0.089 0.911 9 N -0.602 5.602 10 C 0.147 3.853 11 C -0.140 4.140 12 C 0.161 3.839 13 H 0.089 0.911 14 N -0.715 5.715 15 C 0.511 3.489 16 O -0.541 6.541 17 C -0.137 4.137 18 C -0.118 4.118 19 C 0.114 3.886 20 N -0.289 5.289 21 C -0.053 4.053 22 C -0.054 4.054 23 N -0.274 5.274 24 N -0.079 5.079 25 C 0.080 3.920 26 H 0.063 0.937 27 O -0.571 6.571 28 C 0.101 3.899 29 H 0.264 0.736 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.398 0.602 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.190 0.810 42 H 0.189 0.811 43 H 0.377 0.623 44 H 0.036 0.964 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.627 -13.157 -14.895 25.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.175 4.175 3 Si 0.712 3.288 4 H -0.217 1.217 5 H -0.229 1.229 6 H -0.194 1.194 7 C -0.391 4.391 8 H 0.106 0.894 9 N -0.327 5.327 10 C 0.021 3.979 11 C -0.180 4.180 12 C 0.057 3.943 13 H 0.107 0.893 14 N -0.365 5.365 15 C 0.297 3.703 16 O -0.418 6.418 17 C -0.178 4.178 18 C -0.157 4.157 19 C -0.007 4.007 20 N -0.082 5.082 21 C -0.204 4.204 22 C -0.212 4.212 23 N -0.140 5.140 24 N -0.059 5.059 25 C 0.019 3.981 26 H 0.081 0.919 27 O -0.376 6.376 28 C -0.026 4.026 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.232 0.768 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.120 0.880 40 H 0.126 0.874 41 H 0.207 0.793 42 H 0.206 0.794 43 H 0.224 0.776 44 H 0.054 0.946 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 17.786 -11.853 -13.556 25.310 hybrid contribution -0.910 0.090 -0.973 1.335 sum 16.876 -11.763 -14.529 25.185 Atomic orbital electron populations 1.69826 1.05693 1.26707 1.52464 1.25307 0.95269 0.97605 0.99354 0.86992 0.80200 0.84622 0.77017 1.21750 1.22879 1.19439 1.18929 0.84699 0.94932 1.40588 0.89358 1.44330 1.08845 1.33301 1.46188 1.20967 0.92471 0.91395 0.93062 1.22408 0.99658 0.97907 0.98063 1.20957 0.94173 0.92092 0.87079 0.89325 1.46047 1.15637 1.57873 1.16952 1.20411 0.81521 0.79109 0.89258 1.90737 1.63722 1.57869 1.29462 1.21545 0.96159 1.01768 0.98331 1.21599 0.94961 1.02357 0.96740 1.22226 0.77037 1.02043 0.99403 1.47543 1.13003 1.06402 1.41299 1.23720 0.97417 0.89955 1.09271 1.23654 0.96184 0.96414 1.04921 1.75155 1.17394 1.03672 1.17798 1.78361 0.92943 1.19939 1.14691 1.22786 0.93554 0.90221 0.91548 0.91923 1.86435 1.39940 1.47501 1.63723 1.22031 0.97771 0.92791 0.89962 0.92623 0.95356 0.91106 0.91546 0.91418 0.76794 0.88347 0.88551 0.90110 0.89026 0.87996 0.87427 0.79281 0.79403 0.77566 0.94588 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.75 13.97 55.49 0.78 -25.97 16 2 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 3 Si 0.88 21.67 24.34 -169.99 -4.14 17.53 16 4 H -0.29 -6.72 6.62 56.52 0.37 -6.34 16 5 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 6 H -0.27 -6.65 6.64 56.52 0.38 -6.28 16 7 C -0.26 -7.05 10.04 -15.06 -0.15 -7.20 16 8 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 9 N -0.60 -13.66 2.77 -172.32 -0.48 -14.13 16 10 C 0.15 2.84 6.52 -3.72 -0.02 2.81 16 11 C -0.14 -2.27 5.65 -26.61 -0.15 -2.42 16 12 C 0.16 2.57 2.12 -67.89 -0.14 2.43 16 13 H 0.09 1.66 7.58 -51.93 -0.39 1.26 16 14 N -0.72 -8.86 4.92 -53.76 -0.26 -9.12 16 15 C 0.51 6.35 7.79 -10.98 -0.09 6.27 16 16 O -0.54 -9.20 15.64 5.56 0.09 -9.12 16 17 C -0.14 -0.94 5.70 -27.88 -0.16 -1.10 16 18 C -0.12 -0.93 4.63 -26.73 -0.12 -1.06 16 19 C 0.11 0.57 6.45 -4.04 -0.03 0.55 16 20 N -0.29 -2.44 3.44 -61.26 -0.21 -2.65 16 21 C -0.05 -0.34 11.57 -17.05 -0.20 -0.54 16 22 C -0.05 -0.45 12.05 -17.74 -0.21 -0.67 16 23 N -0.27 -3.43 12.41 30.23 0.38 -3.06 16 24 N -0.08 -0.98 12.92 60.35 0.78 -0.20 16 25 C 0.08 1.33 3.14 -26.60 -0.08 1.24 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 27 O -0.57 -8.52 13.16 -35.23 -0.46 -8.98 16 28 C 0.10 2.10 3.83 -3.71 -0.01 2.08 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.40 3.85 8.60 -40.82 -0.35 3.50 16 35 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 38 H 0.09 0.99 8.08 -51.93 -0.42 0.57 16 39 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.11 0.18 8.07 -51.93 -0.42 -0.24 16 41 H 0.19 0.40 8.06 -52.49 -0.42 -0.03 16 42 H 0.19 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.38 4.38 9.08 45.56 0.41 4.79 16 44 H 0.04 0.78 7.07 -51.93 -0.37 0.41 16 45 H 0.08 1.74 4.49 -51.92 -0.23 1.50 16 LS Contribution 367.14 15.07 5.53 5.53 Total: -1.00 -36.81 367.14 -5.49 -42.29 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.02 Total: 4.89 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -1.46 Total: 2.98 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.98 Total: -55.13 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.38 Total: -18.10 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.14 Total: 17.53 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.81 -5.49 -42.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099876567.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.187 kcal (2) G-P(sol) polarization free energy of solvation -36.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds