Wall clock time and date at job start Tue Mar 31 2020 05:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30642 * 128.64236 * 2 1 4 4 O 1.20839 * 109.61891 * 180.25752 * 3 2 1 5 5 N 1.20905 * 115.90819 * 0.02562 * 4 3 2 6 6 C 1.31596 * 109.18088 * 0.02562 * 5 4 3 7 7 C 1.48280 * 128.71280 * 179.97438 * 6 5 4 8 8 O 1.21499 * 119.99778 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99916 * 0.02562 * 7 6 5 10 10 C 1.46498 * 119.99585 * 180.02562 * 9 7 6 11 11 C 1.53007 * 109.46936 * 179.97438 * 10 9 7 12 12 N 1.46895 * 109.47322 * 180.02562 * 11 10 9 13 13 C 1.46843 * 110.99946 * 45.79225 * 12 11 10 14 14 C 1.53043 * 109.52551 * 185.83878 * 13 12 11 15 15 C 1.53114 * 109.27396 * 300.82447 * 14 13 12 16 16 N 1.46508 * 109.57259 * 177.58972 * 15 14 13 17 17 C 1.36936 * 119.99985 * 85.27909 * 16 15 14 18 18 H 1.07999 * 120.00270 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99728 * 180.02562 * 17 16 15 20 20 N 1.31615 * 120.00448 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99783 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.46879 * 60.00264 * 21 19 17 23 23 H 1.48504 * 109.46934 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47222 * 300.00071 * 21 19 17 25 25 C 1.53116 * 109.16647 * 57.65294 * 15 14 13 26 26 C 1.46848 * 111.00195 * 170.00246 * 12 11 10 27 27 H 1.09002 * 109.47143 * 269.67435 * 1 2 3 28 28 H 1.08999 * 109.47218 * 29.67678 * 1 2 3 29 29 H 1.08999 * 109.47414 * 149.67725 * 1 2 3 30 30 H 0.97002 * 119.99869 * 0.02562 * 9 7 6 31 31 H 1.08996 * 109.47454 * 299.99543 * 10 9 7 32 32 H 1.09002 * 109.47295 * 60.00533 * 10 9 7 33 33 H 1.09001 * 109.46896 * 300.00555 * 11 10 9 34 34 H 1.09007 * 109.46649 * 59.99793 * 11 10 9 35 35 H 1.08999 * 109.46474 * 305.85170 * 13 12 11 36 36 H 1.08998 * 109.46164 * 65.82483 * 13 12 11 37 37 H 1.08997 * 109.50528 * 180.87994 * 14 13 12 38 38 H 1.08997 * 109.49962 * 60.75881 * 14 13 12 39 39 H 1.09004 * 109.52427 * 297.74078 * 15 14 13 40 40 H 0.96999 * 119.99918 * 265.28553 * 16 15 14 41 41 H 0.96992 * 120.00216 * 179.97438 * 20 19 17 42 42 H 1.08997 * 109.50664 * 182.40283 * 25 15 14 43 43 H 1.09000 * 109.50334 * 62.28408 * 25 15 14 44 44 H 1.09000 * 109.46068 * 294.17771 * 26 12 11 45 45 H 1.09002 * 109.45761 * 54.15461 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3228 1.0204 0.0000 4 8 3.4652 0.6265 -0.0051 5 7 3.6101 -0.5738 -0.0095 6 6 2.4280 -1.1520 -0.0079 7 6 2.1033 -2.5989 -0.0122 8 8 0.9436 -2.9612 -0.0104 9 7 3.0946 -3.5119 -0.0182 10 6 2.7738 -4.9413 -0.0230 11 6 4.0697 -5.7548 -0.0299 12 7 3.7480 -7.1881 -0.0354 13 6 2.6976 -7.4880 -1.0167 14 6 2.2868 -8.9571 -0.8935 15 6 3.5092 -9.8460 -1.1386 16 7 3.1362 -11.2522 -0.9656 17 6 2.5916 -11.9496 -2.0107 18 1 2.4374 -11.4632 -2.9626 19 6 2.2376 -13.2818 -1.8466 20 7 2.4259 -13.8747 -0.6867 21 14 1.4954 -14.2334 -3.2724 22 1 2.4541 -14.2540 -4.4063 23 1 1.2082 -15.6255 -2.8423 24 1 0.2344 -13.5775 -3.7022 25 6 4.6061 -9.4804 -0.1348 26 6 4.9495 -7.9962 -0.2800 27 1 -0.3633 -0.0058 1.0277 28 1 -0.3633 0.8929 -0.5088 29 1 -0.3634 -0.8871 -0.5188 30 1 4.0205 -3.2226 -0.0192 31 1 2.1951 -5.1869 0.8674 32 1 2.1908 -5.1799 -0.9126 33 1 4.6481 -5.5092 -0.9205 34 1 4.6531 -5.5163 0.8594 35 1 1.8326 -6.8521 -0.8285 36 1 3.0751 -7.2995 -2.0217 37 1 1.5182 -9.1833 -1.6325 38 1 1.8965 -9.1431 0.1071 39 1 3.8765 -9.6887 -2.1528 40 1 3.2749 -11.6891 -0.1108 41 1 2.1783 -14.8055 -0.5720 42 1 5.4944 -10.0804 -0.3317 43 1 4.2521 -9.6746 0.8777 44 1 5.3164 -7.8053 -1.2885 45 1 5.7201 -7.7294 0.4433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672468521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:09 Heat of formation + Delta-G solvation = 95.374068 kcal Electronic energy + Delta-G solvation = -26536.593968 eV Core-core repulsion = 22594.794855 eV Total energy + Delta-G solvation = -3941.799113 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -47.38615 -40.26966 -38.95223 -36.12043 -35.62858 -35.22697 -34.50263 -32.35405 -30.68606 -30.21205 -29.75418 -28.11826 -26.04070 -24.34731 -23.35097 -23.09749 -22.19866 -21.28490 -21.13280 -19.55553 -19.35391 -18.91186 -17.59569 -17.08680 -16.72350 -16.07543 -15.59163 -15.05963 -14.80478 -14.62948 -14.58994 -14.27473 -14.02504 -13.83359 -13.76121 -13.51426 -13.29946 -12.96525 -12.51754 -12.45705 -12.39346 -11.97453 -11.74745 -11.67941 -11.58652 -11.20815 -10.91487 -10.86323 -10.83279 -10.78445 -10.57992 -10.26104 -10.21322 -9.74094 -9.63159 -9.56425 -8.85752 -8.29928 -6.93789 -5.75048 -3.03633 0.23199 0.80443 2.09630 2.43457 2.85021 2.91610 3.33731 3.44294 3.48752 3.49729 3.96858 4.15380 4.28912 4.49907 4.59468 4.61375 4.76438 4.94899 5.08802 5.13648 5.15666 5.30218 5.38510 5.46173 5.51723 5.56734 5.60912 5.63064 5.70319 5.80310 5.86507 6.02715 6.12277 6.25959 6.46842 6.49475 6.64120 6.76993 6.86993 7.05606 7.18792 7.21491 7.44308 7.70173 7.92135 8.43698 9.54612 10.13285 10.48147 11.47550 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027679 B = 0.001907 C = 0.001823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.364273 B =14682.429400 C =15353.778909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.064 3.936 3 N -0.357 5.357 4 O 0.344 5.656 5 N -0.321 5.321 6 C -0.043 4.043 7 C 0.606 3.394 8 O -0.506 6.506 9 N -0.708 5.708 10 C 0.113 3.887 11 C 0.044 3.956 12 N -0.530 5.530 13 C 0.048 3.952 14 C -0.132 4.132 15 C 0.177 3.823 16 N -0.724 5.724 17 C -0.238 4.238 18 H 0.068 0.932 19 C -0.014 4.014 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.121 4.121 26 C 0.064 3.936 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.407 0.593 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.030 0.970 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.041 0.959 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.032 0.968 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.454 29.072 2.781 29.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.102 4.102 3 N -0.082 5.082 4 O 0.118 5.882 5 N -0.041 5.041 6 C -0.209 4.209 7 C 0.388 3.612 8 O -0.379 6.379 9 N -0.360 5.360 10 C -0.010 4.010 11 C -0.084 4.084 12 N -0.256 5.256 13 C -0.080 4.080 14 C -0.173 4.173 15 C 0.067 3.933 16 N -0.364 5.364 17 C -0.370 4.370 18 H 0.086 0.914 19 C -0.210 4.210 20 N -0.581 5.581 21 Si 0.737 3.263 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.160 4.160 26 C -0.064 4.064 27 H 0.114 0.886 28 H 0.107 0.893 29 H 0.122 0.878 30 H 0.242 0.758 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.048 0.952 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.059 0.941 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.050 0.950 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.320 29.219 3.076 29.472 hybrid contribution -0.218 -0.861 -1.275 1.554 sum 2.102 28.358 1.801 28.493 Atomic orbital electron populations 1.20382 0.82730 1.05434 1.04957 1.26284 1.00478 0.85003 0.98439 1.75095 0.91087 1.23918 1.18136 1.85074 1.23376 1.16503 1.63246 1.75351 1.23026 0.92994 1.12744 1.26071 0.88237 0.98413 1.08177 1.16376 0.85630 0.81430 0.77748 1.90862 1.18745 1.79411 1.48884 1.45775 1.09525 1.06914 1.73797 1.21741 0.98116 0.76924 1.04176 1.22224 0.95606 0.89083 1.01500 1.62002 1.10084 1.02639 1.50880 1.22335 0.94106 0.99058 0.92456 1.22315 1.00722 0.91761 1.02469 1.20237 0.91417 0.85725 0.95920 1.42410 1.74690 1.05760 1.13573 1.19188 1.33025 0.92832 0.91912 0.91364 1.24739 1.02275 0.97035 0.96969 1.69646 1.53747 1.11947 1.22785 0.86287 0.79083 0.79218 0.81709 1.21352 1.21709 1.21295 1.21861 0.99784 0.93120 1.01228 1.22066 0.90945 0.94254 0.99132 0.88630 0.89285 0.87836 0.75761 0.89501 0.90050 0.94289 0.90056 0.90863 0.95196 0.91664 0.91605 0.94106 0.78230 0.93489 0.91425 0.91220 0.94964 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.22 36.00 0.37 -0.06 16 2 C 0.06 0.51 7.79 -79.33 -0.62 -0.11 16 3 N -0.36 -3.01 12.22 33.76 0.41 -2.60 16 4 O 0.34 2.82 11.65 27.26 0.32 3.13 16 5 N -0.32 -2.69 12.13 33.49 0.41 -2.28 16 6 C -0.04 -0.38 7.56 -80.07 -0.61 -0.99 16 7 C 0.61 5.96 7.85 -12.13 -0.10 5.86 16 8 O -0.51 -6.22 15.96 5.37 0.09 -6.14 16 9 N -0.71 -5.83 5.55 -61.11 -0.34 -6.17 16 10 C 0.11 1.05 4.93 -4.04 -0.02 1.03 16 11 C 0.04 0.41 5.39 -3.82 -0.02 0.39 16 12 N -0.53 -6.60 4.81 -234.67 -1.13 -7.73 16 13 C 0.05 0.66 4.85 -3.83 -0.02 0.65 16 14 C -0.13 -2.33 5.68 -26.65 -0.15 -2.48 16 15 C 0.18 3.47 2.84 -67.81 -0.19 3.27 16 16 N -0.72 -18.06 5.13 -53.30 -0.27 -18.34 16 17 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 18 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -28.20 13.06 55.49 0.72 -27.47 16 21 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 C -0.12 -1.97 5.57 -26.66 -0.15 -2.11 16 26 C 0.06 0.82 5.42 -3.84 -0.02 0.80 16 27 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.10 0.63 7.32 -51.93 -0.38 0.25 16 30 H 0.41 2.60 8.33 -40.82 -0.34 2.26 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.83 6.21 -51.93 -0.32 0.51 16 33 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 34 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 35 H 0.07 0.92 5.81 -51.93 -0.30 0.62 16 36 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.04 0.83 8.08 -51.93 -0.42 0.41 16 40 H 0.38 10.22 7.80 -40.82 -0.32 9.90 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 LS Contribution 372.21 15.07 5.61 5.61 Total: -1.00 -31.42 372.21 -7.67 -39.10 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.70 Total: 6.49 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -1.77 Total: -0.99 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: -0.20 Total: -64.59 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: 0.40 Total: -3.00 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.42 -7.67 -39.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672468521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.469 kcal (2) G-P(sol) polarization free energy of solvation -31.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds