Wall clock time and date at job start Tue Mar 31 2020 05:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00041 * 2 1 4 4 H 1.48503 * 109.47261 * 271.89267 * 3 2 1 5 5 H 1.48495 * 109.47387 * 31.89564 * 3 2 1 6 6 H 1.48505 * 109.46916 * 151.89744 * 3 2 1 7 7 C 1.38811 * 119.99376 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00370 * 340.05448 * 7 2 1 9 9 N 1.36944 * 119.99468 * 160.05986 * 7 2 1 10 10 C 1.47153 * 120.98099 * 153.72880 * 9 7 2 11 11 C 1.53296 * 108.38300 * 129.48186 * 10 9 7 12 12 O 1.42961 * 109.22316 * 52.30390 * 11 10 9 13 13 C 1.42965 * 114.16533 * 297.41931 * 12 11 10 14 14 H 1.08995 * 109.50835 * 302.60089 * 13 12 11 15 15 C 1.53005 * 109.51064 * 182.50399 * 13 12 11 16 16 N 1.46499 * 109.46852 * 64.99962 * 15 13 12 17 17 C 1.34779 * 119.99257 * 179.97438 * 16 15 13 18 18 O 1.21280 * 120.00222 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99427 * 179.72182 * 17 16 15 20 20 C 1.54139 * 110.74860 * 327.73166 * 19 17 16 21 21 C 1.57060 * 102.00456 * 97.57969 * 20 19 17 22 22 C 1.54830 * 101.73431 * 36.31040 * 21 20 19 23 23 N 1.47860 * 110.77643 * 87.40587 * 19 17 16 24 24 C 1.47945 * 108.37700 * 120.32883 * 23 19 17 25 25 C 1.54838 * 105.06794 * 337.18365 * 24 23 19 26 26 C 1.54144 * 110.74483 * 206.28744 * 19 17 16 27 27 C 1.47152 * 120.98170 * 333.74583 * 9 7 2 28 28 H 0.97003 * 119.99625 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.68181 * 9.76063 * 10 9 7 30 30 H 1.08993 * 109.71234 * 249.22484 * 10 9 7 31 31 H 1.09001 * 109.51817 * 292.37750 * 11 10 9 32 32 H 1.08997 * 109.50820 * 172.22556 * 11 10 9 33 33 H 1.08997 * 109.46910 * 304.99800 * 15 13 12 34 34 H 1.08998 * 109.46864 * 184.99583 * 15 13 12 35 35 H 0.97000 * 120.00547 * 359.97438 * 16 15 13 36 36 H 1.09002 * 110.73048 * 215.76627 * 20 19 17 37 37 H 1.09002 * 110.72947 * 339.06892 * 20 19 17 38 38 H 1.09006 * 111.10629 * 278.12747 * 21 20 19 39 39 H 1.09004 * 110.81275 * 154.36486 * 21 20 19 40 40 H 1.09002 * 110.32897 * 204.26636 * 22 21 20 41 41 H 1.09000 * 110.41371 * 82.09764 * 22 21 20 42 42 H 1.09002 * 110.32696 * 218.28551 * 24 23 19 43 43 H 1.09007 * 110.32564 * 96.08253 * 24 23 19 44 44 H 1.09000 * 110.98473 * 278.58386 * 25 24 23 45 45 H 1.08995 * 110.99368 * 154.76442 * 25 24 23 46 46 H 1.08991 * 110.72834 * 20.92431 * 26 19 17 47 47 H 1.09008 * 110.72710 * 144.04136 * 26 19 17 48 48 H 1.08997 * 109.67605 * 110.79358 * 27 9 7 49 49 H 1.08998 * 109.67991 * 350.24313 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4577 2.0695 -1.3993 5 1 1.4684 2.6407 0.7397 6 1 3.5673 1.4288 0.6595 7 6 2.0102 -1.2022 0.0005 8 1 1.5187 -2.1093 0.3200 9 7 3.3180 -1.2380 -0.4039 10 6 4.2357 -2.2766 0.0906 11 6 4.9367 -2.9155 -1.1137 12 8 5.5167 -1.8877 -1.9205 13 6 4.5673 -0.9770 -2.4798 14 1 3.8401 -1.5292 -3.0751 15 6 5.2925 0.0352 -3.3690 16 7 5.8853 -0.6583 -4.5152 17 6 6.5774 0.0372 -5.4392 18 8 6.7098 1.2370 -5.3215 19 6 7.1926 -0.6771 -6.6150 20 6 7.6265 -2.1029 -6.2216 21 6 6.4131 -2.9641 -6.7245 22 6 6.0178 -2.2221 -8.0247 23 7 6.2241 -0.7875 -7.7268 24 6 6.7908 -0.1015 -8.9088 25 6 7.8220 0.9015 -8.3361 26 6 8.4135 0.0988 -7.1473 27 6 3.8473 -0.2387 -1.3456 28 1 -0.4850 0.8401 -0.0004 29 1 3.6726 -3.0360 0.6330 30 1 4.9772 -1.8276 0.7514 31 1 4.2104 -3.4749 -1.7033 32 1 5.7192 -3.5891 -0.7641 33 1 6.0785 0.5256 -2.7947 34 1 4.5820 0.7818 -3.7238 35 1 5.7798 -1.6180 -4.6091 36 1 8.5449 -2.3829 -6.7377 37 1 7.7492 -2.1847 -5.1416 38 1 5.5961 -2.9500 -6.0031 39 1 6.7257 -3.9863 -6.9380 40 1 4.9719 -2.4120 -8.2660 41 1 6.6585 -2.5333 -8.8498 42 1 6.0075 0.4287 -9.4505 43 1 7.2847 -0.8201 -9.5630 44 1 7.3308 1.8101 -7.9876 45 1 8.5917 1.1333 -9.0721 46 1 8.8057 0.7713 -6.3846 47 1 9.1879 -0.5880 -7.4892 48 1 4.5496 0.4160 -0.8297 49 1 3.0269 0.3513 -1.7542 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035430821.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:17 Heat of formation + Delta-G solvation = -39.843446 kcal Electronic energy + Delta-G solvation = -29179.623015 eV Core-core repulsion = 25335.500774 eV Total energy + Delta-G solvation = -3844.122241 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.11404 -39.05000 -38.15505 -35.19387 -34.62694 -33.84537 -31.94078 -31.59264 -31.00950 -28.64544 -27.69499 -25.86715 -25.49655 -23.63308 -22.62492 -21.90462 -21.43882 -21.02941 -20.17053 -19.22266 -17.63852 -17.05660 -16.42482 -16.18886 -15.86964 -15.37832 -15.30928 -14.71974 -14.59431 -14.49831 -14.17679 -14.08406 -13.73970 -13.60653 -13.35445 -13.24957 -12.75500 -12.55689 -12.37487 -12.26717 -11.92551 -11.89391 -11.75628 -11.70033 -11.41097 -11.25665 -11.23911 -11.10446 -10.83253 -10.68422 -10.41627 -10.31862 -9.91899 -9.81185 -9.55649 -9.43606 -8.90326 -8.71774 -8.60348 -7.06737 -6.01714 -3.39522 2.58920 3.20210 3.29062 3.46517 3.48492 3.87523 4.02890 4.06020 4.18238 4.44754 4.46652 4.65062 4.71271 4.74186 4.80129 4.87184 5.02274 5.16759 5.22410 5.25515 5.31661 5.38439 5.40447 5.46570 5.54132 5.57039 5.59717 5.65476 5.68087 5.75851 5.79698 5.81258 5.84518 5.85369 6.00690 6.03964 6.10525 6.18004 6.41416 6.47245 6.51134 6.56253 6.65116 6.68442 7.56618 7.62928 7.81657 8.23906 8.34016 8.81346 9.62389 9.98187 11.13761 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.018262 B = 0.003409 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.875247 B = 8211.972727 C = 8785.912735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.025 3.975 3 Si 0.880 3.120 4 H -0.285 1.285 5 H -0.300 1.300 6 H -0.269 1.269 7 C -0.265 4.265 8 H 0.089 0.911 9 N -0.607 5.607 10 C 0.113 3.887 11 C 0.048 3.952 12 O -0.386 6.386 13 C 0.066 3.934 14 H 0.066 0.934 15 C 0.127 3.873 16 N -0.715 5.715 17 C 0.542 3.458 18 O -0.541 6.541 19 C 0.071 3.929 20 C -0.140 4.140 21 C -0.135 4.135 22 C 0.035 3.965 23 N -0.499 5.499 24 C 0.037 3.963 25 C -0.129 4.129 26 C -0.121 4.121 27 C 0.102 3.898 28 H 0.264 0.736 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.401 0.599 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.083 0.917 43 H 0.052 0.948 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.074 0.926 48 H 0.038 0.962 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.135 -6.436 -16.933 24.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.174 4.174 3 Si 0.710 3.290 4 H -0.213 1.213 5 H -0.228 1.228 6 H -0.194 1.194 7 C -0.392 4.392 8 H 0.106 0.894 9 N -0.332 5.332 10 C -0.013 4.013 11 C -0.030 4.030 12 O -0.305 6.305 13 C 0.006 3.994 14 H 0.084 0.916 15 C 0.003 3.997 16 N -0.367 5.367 17 C 0.327 3.673 18 O -0.417 6.417 19 C -0.022 4.022 20 C -0.179 4.179 21 C -0.173 4.173 22 C -0.093 4.093 23 N -0.225 5.225 24 C -0.091 4.091 25 C -0.167 4.167 26 C -0.160 4.160 27 C -0.024 4.024 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.237 0.763 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.070 0.930 44 H 0.101 0.899 45 H 0.093 0.907 46 H 0.104 0.896 47 H 0.093 0.907 48 H 0.056 0.944 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 16.704 -5.216 -16.682 24.177 hybrid contribution 0.686 0.090 -0.114 0.701 sum 17.390 -5.126 -16.797 24.715 Atomic orbital electron populations 1.69820 1.05674 1.26739 1.52562 1.25254 0.95263 0.97625 0.99262 0.87025 0.80030 0.84549 0.77410 1.21272 1.22830 1.19449 1.18906 0.84148 0.94939 1.41238 0.89373 1.44350 1.08449 1.31538 1.48831 1.21629 0.93045 0.92468 0.94191 1.23056 0.97473 0.89441 0.93063 1.87806 1.33655 1.41885 1.67198 1.22866 0.90677 0.91236 0.94611 0.91577 1.21440 0.97998 0.94511 0.85767 1.46000 1.54388 1.11940 1.24364 1.19971 0.77805 0.87135 0.82426 1.90667 1.59721 1.14520 1.76745 1.22372 0.91972 0.95875 0.91942 1.23398 0.98814 0.92843 1.02852 1.23168 0.97697 0.99135 0.97286 1.23303 1.02128 0.86815 0.97013 1.65031 1.41084 1.11955 1.04381 1.23277 0.97108 0.96535 0.92137 1.22751 0.97930 0.99125 0.96888 1.22747 0.95427 0.98933 0.98866 1.21919 0.97541 0.92552 0.90439 0.92587 0.90981 0.95055 0.93313 0.89513 0.90676 0.89946 0.76298 0.90038 0.89594 0.90347 0.90046 0.89595 0.92819 0.89842 0.93008 0.89855 0.90724 0.89614 0.90735 0.94449 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.55 13.97 55.49 0.78 -26.77 16 2 C 0.03 0.73 5.26 -17.43 -0.09 0.64 16 3 Si 0.88 22.43 24.28 -169.99 -4.13 18.30 16 4 H -0.29 -7.00 6.58 56.52 0.37 -6.63 16 5 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 6 H -0.27 -6.80 6.54 56.52 0.37 -6.43 16 7 C -0.26 -7.31 10.10 -15.06 -0.15 -7.46 16 8 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 9 N -0.61 -14.35 2.84 -171.83 -0.49 -14.84 16 10 C 0.11 2.17 6.73 -3.53 -0.02 2.14 16 11 C 0.05 0.76 6.98 37.31 0.26 1.02 16 12 O -0.39 -6.61 10.33 -35.23 -0.36 -6.97 16 13 C 0.07 1.18 2.81 -26.58 -0.07 1.11 16 14 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 15 C 0.13 2.11 5.34 -4.04 -0.02 2.08 16 16 N -0.71 -10.29 5.13 -60.29 -0.31 -10.60 16 17 C 0.54 8.10 6.90 -10.98 -0.08 8.02 16 18 O -0.54 -9.93 15.98 5.56 0.09 -9.84 16 19 C 0.07 0.79 0.93 -131.03 -0.12 0.67 16 20 C -0.14 -1.21 5.61 -23.93 -0.13 -1.35 16 21 C -0.13 -1.05 6.86 -23.57 -0.16 -1.21 16 22 C 0.03 0.29 6.75 -2.27 -0.02 0.28 16 23 N -0.50 -5.40 5.37 -214.06 -1.15 -6.55 16 24 C 0.04 0.34 6.74 -2.28 -0.02 0.32 16 25 C -0.13 -1.22 7.07 -24.62 -0.17 -1.39 16 26 C -0.12 -1.21 5.72 -24.99 -0.14 -1.36 16 27 C 0.10 2.23 3.67 -3.54 -0.01 2.22 16 28 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 29 H 0.07 1.33 7.96 -51.93 -0.41 0.92 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.40 5.06 5.57 -40.82 -0.23 4.84 16 36 H 0.08 0.58 7.32 -51.93 -0.38 0.20 16 37 H 0.09 0.79 7.19 -51.93 -0.37 0.42 16 38 H 0.08 0.67 6.74 -51.93 -0.35 0.32 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.37 7.13 -51.93 -0.37 0.00 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 0.38 7.13 -51.93 -0.37 0.01 16 44 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 0.99 7.36 -51.93 -0.38 0.61 16 47 H 0.07 0.59 7.32 -51.92 -0.38 0.21 16 48 H 0.04 0.84 6.86 -51.93 -0.36 0.48 16 49 H 0.08 1.96 4.61 -51.93 -0.24 1.72 16 LS Contribution 366.72 15.07 5.53 5.53 Total: -1.00 -32.95 366.72 -9.12 -42.06 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -8.11 Total: 3.95 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -0.96 Total: 5.73 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: -1.17 Total: -58.76 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.28 Total: -16.81 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.13 Total: 18.30 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.95 -9.12 -42.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035430821.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.221 kcal (2) G-P(sol) polarization free energy of solvation -32.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds