Wall clock time and date at job start Tue Mar 31 2020 04:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46505 * 109.46660 * 2 1 4 4 C 1.35035 * 124.88316 * 125.02448 * 3 2 1 5 5 C 1.35362 * 107.23203 * 179.71338 * 4 3 2 6 6 C 1.41506 * 105.49903 * 0.37292 * 5 4 3 7 7 C 1.47711 * 126.51683 * 179.87878 * 6 5 4 8 8 O 1.21573 * 120.00075 * 359.71742 * 7 6 5 9 9 N 1.34777 * 119.99927 * 179.44236 * 7 6 5 10 10 C 1.46499 * 120.00195 * 180.27919 * 9 7 6 11 11 C 1.52997 * 109.47551 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47270 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.46881 * 179.97438 * 12 11 10 14 14 C 1.46902 * 111.00078 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.47278 * 179.97438 * 14 13 12 16 16 O 1.21293 * 120.00198 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99935 * 179.97438 * 15 14 13 18 18 C 1.37100 * 119.99793 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00221 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99883 * 180.02562 * 18 17 15 21 21 N 1.31416 * 119.99838 * 359.97438 * 20 18 17 22 22 Si 1.86789 * 120.00112 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47635 * 59.99696 * 22 20 18 24 24 H 1.48504 * 109.47543 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47042 * 299.99712 * 22 20 18 26 26 N 1.28463 * 124.88731 * 304.97814 * 3 2 1 27 27 H 1.09004 * 109.46922 * 299.99164 * 1 2 3 28 28 H 1.08997 * 109.47655 * 59.99750 * 1 2 3 29 29 H 1.09005 * 109.46970 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46922 * 240.00836 * 2 1 3 31 31 H 1.08997 * 109.47655 * 120.00250 * 2 1 3 32 32 H 1.08008 * 126.38238 * 359.97438 * 4 3 2 33 33 H 1.07997 * 127.25460 * 180.23812 * 5 4 3 34 34 H 0.97000 * 119.99736 * 0.27192 * 9 7 6 35 35 H 1.08998 * 109.46795 * 299.99885 * 10 9 7 36 36 H 1.09002 * 109.47196 * 59.99076 * 10 9 7 37 37 H 1.09007 * 109.46479 * 299.99856 * 11 10 9 38 38 H 1.08997 * 109.46852 * 59.99432 * 11 10 9 39 39 H 1.08992 * 109.46818 * 299.99508 * 12 11 10 40 40 H 1.08997 * 109.47123 * 59.99715 * 12 11 10 41 41 H 1.00897 * 111.00226 * 56.04233 * 13 12 11 42 42 H 1.09001 * 109.46944 * 299.99915 * 14 13 12 43 43 H 1.09000 * 109.46931 * 59.99999 * 14 13 12 44 44 H 0.96997 * 120.00245 * 0.02562 * 17 15 14 45 45 H 0.96994 * 119.99890 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8749 1.8976 0.9071 5 6 3.0877 3.1904 0.5673 6 6 2.3009 3.4122 -0.5878 7 6 2.1870 4.6757 -1.3444 8 8 2.8043 5.6586 -0.9827 9 7 1.4029 4.7374 -2.4389 10 6 1.2947 5.9888 -3.1928 11 6 0.3501 5.7892 -4.3797 12 6 0.2365 7.0963 -5.1667 13 7 -0.6699 6.9043 -6.3066 14 6 -0.8040 8.1418 -7.0868 15 6 -1.7387 7.9065 -8.2452 16 8 -2.2438 6.8154 -8.4050 17 7 -2.0141 8.9088 -9.1032 18 6 -2.8648 8.6948 -10.1568 19 1 -3.3146 7.7233 -10.2991 20 6 -3.1484 9.7280 -11.0417 21 7 -2.6015 10.9103 -10.8683 22 14 -4.3080 9.4367 -12.4768 23 1 -5.6401 9.0295 -11.9622 24 1 -4.4429 10.6874 -13.2660 25 1 -3.7624 8.3615 -13.3437 26 7 1.6935 2.2754 -0.8634 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8932 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.3125 1.3750 1.7450 33 1 3.7223 3.9033 1.0726 34 1 0.9105 3.9531 -2.7275 35 1 0.9023 6.7714 -2.5434 36 1 2.2798 6.2796 -3.5577 37 1 0.7430 5.0066 -5.0290 38 1 -0.6350 5.4982 -4.0151 39 1 -0.1565 7.8784 -4.5172 40 1 1.2216 7.3877 -5.5313 41 1 -1.5715 6.5713 -5.9996 42 1 -1.2049 8.9308 -6.4505 43 1 0.1738 8.4411 -7.4643 44 1 -1.6104 9.7814 -8.9753 45 1 -2.7997 11.6316 -11.4858 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167634310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:09 Heat of formation + Delta-G solvation = 0.281181 kcal Electronic energy + Delta-G solvation = -25204.571218 eV Core-core repulsion = 21258.648568 eV Total energy + Delta-G solvation = -3945.922650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.03473 -39.57415 -38.28520 -36.49886 -35.05832 -34.81272 -33.81535 -31.73359 -31.18913 -30.90994 -30.27923 -27.25119 -25.55398 -24.47825 -23.28024 -22.28083 -21.79407 -21.62444 -20.09354 -19.19245 -18.25499 -17.84634 -17.00003 -16.48493 -16.40423 -15.99921 -15.73192 -15.29338 -14.97004 -14.58830 -14.49931 -14.27738 -14.13878 -13.97026 -13.57521 -13.45398 -13.25994 -13.01826 -12.77823 -12.70725 -12.04453 -12.00742 -11.81313 -11.74406 -11.45074 -11.38201 -11.23700 -11.03903 -10.88837 -10.42571 -10.34545 -10.19138 -9.67637 -9.47917 -9.47153 -9.20761 -8.44193 -8.03727 -7.93570 -6.39427 -3.80323 1.26206 1.77662 1.98714 2.94997 3.20686 3.21863 3.27377 3.31872 3.82505 3.93525 4.11894 4.26413 4.32799 4.35724 4.37446 4.52642 4.79113 4.88251 4.98435 5.04776 5.11557 5.14790 5.21701 5.28188 5.30248 5.39706 5.48675 5.50936 5.56566 5.68212 5.83106 6.00684 6.01265 6.04354 6.09300 6.24575 6.30005 6.34129 7.22339 7.23515 7.56123 7.57075 7.68556 8.00883 8.08438 8.63751 9.19939 9.56739 10.08344 10.78256 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026257 B = 0.001512 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.133758 B =18513.284895 C =19490.265824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.116 3.884 3 N -0.281 5.281 4 C -0.021 4.021 5 C -0.179 4.179 6 C -0.019 4.019 7 C 0.604 3.396 8 O -0.534 6.534 9 N -0.716 5.716 10 C 0.121 3.879 11 C -0.129 4.129 12 C 0.063 3.937 13 N -0.670 5.670 14 C 0.050 3.950 15 C 0.441 3.559 16 O -0.584 6.584 17 N -0.564 5.564 18 C -0.301 4.301 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.932 3.068 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.274 1.274 26 N -0.258 5.258 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.182 0.818 33 H 0.162 0.838 34 H 0.407 0.593 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.030 0.970 40 H 0.074 0.926 41 H 0.349 0.651 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.625 -18.707 25.717 33.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.070 5.070 4 C -0.163 4.163 5 C -0.207 4.207 6 C -0.179 4.179 7 C 0.388 3.612 8 O -0.409 6.409 9 N -0.368 5.368 10 C -0.003 4.003 11 C -0.167 4.167 12 C -0.067 4.067 13 N -0.302 5.302 14 C -0.082 4.082 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.200 5.200 18 C -0.430 4.430 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.759 3.241 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 N -0.095 5.095 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.122 0.878 32 H 0.199 0.801 33 H 0.180 0.820 34 H 0.243 0.757 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.168 0.832 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.226 0.774 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.405 -19.411 24.565 32.992 hybrid contribution -0.498 0.931 0.415 1.134 sum 9.907 -18.480 24.979 32.613 Atomic orbital electron populations 1.22087 0.92902 1.03586 1.04067 1.22046 0.96875 0.76595 1.04872 1.45653 1.32307 1.10427 1.18643 1.22898 0.99198 0.95551 0.98651 1.21793 1.04397 0.96147 0.98354 1.21948 1.02929 0.93156 0.99829 1.16879 0.79102 0.85449 0.79765 1.90804 1.45896 1.35732 1.68478 1.45851 1.47919 1.15173 1.27820 1.21374 1.00497 0.85741 0.92708 1.21743 0.99705 0.99477 0.95822 1.21826 0.98229 0.95352 0.91339 1.60056 1.17345 1.30116 1.22694 1.21671 1.00341 0.91009 0.95196 1.19820 0.86214 0.85741 0.85615 1.90517 1.55745 1.24713 1.75865 1.41858 1.41892 1.11819 1.24458 1.19664 1.21677 0.98870 1.02808 0.87976 1.25264 0.98491 0.94836 0.99341 1.69607 1.44148 1.02019 1.38540 0.85907 0.80263 0.77457 0.80513 1.19945 1.20986 1.19901 1.73445 1.22122 0.98064 1.15823 0.91817 0.90592 0.90097 0.88715 0.87817 0.80092 0.82009 0.75739 0.91205 0.90969 0.90062 0.91218 0.95193 0.90726 0.83204 0.93806 0.89532 0.77430 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.56 10.02 37.15 0.37 -0.18 16 2 C 0.12 0.35 7.12 -4.04 -0.03 0.32 16 3 N -0.28 -1.92 3.41 -61.33 -0.21 -2.13 16 4 C -0.02 -0.13 11.40 -17.17 -0.20 -0.32 16 5 C -0.18 -1.60 10.81 -39.36 -0.43 -2.03 16 6 C -0.02 -0.20 7.13 -82.76 -0.59 -0.79 16 7 C 0.60 7.54 7.83 -12.39 -0.10 7.44 16 8 O -0.53 -8.24 16.93 5.30 0.09 -8.15 16 9 N -0.72 -7.50 5.55 -61.29 -0.34 -7.84 16 10 C 0.12 1.24 5.67 -4.04 -0.02 1.21 16 11 C -0.13 -1.33 5.59 -26.73 -0.15 -1.48 16 12 C 0.06 0.76 5.69 -3.83 -0.02 0.74 16 13 N -0.67 -10.91 6.13 -115.07 -0.70 -11.61 16 14 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 15 C 0.44 10.58 7.82 -10.99 -0.09 10.50 16 16 O -0.58 -16.09 15.78 5.55 0.09 -16.00 16 17 N -0.56 -14.50 5.29 -10.96 -0.06 -14.56 16 18 C -0.30 -8.49 9.68 -14.93 -0.14 -8.64 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 21 N -0.90 -24.75 13.05 55.50 0.72 -24.02 16 22 Si 0.93 21.23 29.55 -169.99 -5.02 16.20 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 N -0.26 -2.47 11.36 33.42 0.38 -2.09 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.08 0.39 8.08 -51.93 -0.42 -0.03 16 29 H 0.08 0.12 8.14 -51.93 -0.42 -0.31 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 0.01 8.04 -51.93 -0.42 -0.40 16 32 H 0.18 0.39 8.06 -52.48 -0.42 -0.03 16 33 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.41 3.70 8.20 -40.82 -0.33 3.37 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.35 5.80 8.43 -39.29 -0.33 5.47 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 44 H 0.39 9.64 7.90 -40.82 -0.32 9.31 16 45 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 390.57 15.07 5.89 5.89 Total: -1.00 -35.83 390.57 -7.52 -43.34 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -6.83 Total: 12.83 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -1.52 Total: 8.16 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: -0.21 Total: -62.26 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: 0.18 Total: -24.15 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.83 -7.52 -43.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167634310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.624 kcal (2) G-P(sol) polarization free energy of solvation -35.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds