Wall clock time and date at job start Tue Mar 31 2020 04:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46505 * 109.46660 * 2 1 4 4 C 1.35035 * 124.88316 * 125.02448 * 3 2 1 5 5 C 1.35362 * 107.23203 * 179.71338 * 4 3 2 6 6 C 1.41506 * 105.49903 * 0.37292 * 5 4 3 7 7 C 1.47711 * 126.51683 * 179.87878 * 6 5 4 8 8 O 1.21573 * 120.00075 * 359.71742 * 7 6 5 9 9 N 1.34777 * 119.99927 * 179.44236 * 7 6 5 10 10 C 1.46499 * 120.00195 * 180.27919 * 9 7 6 11 11 C 1.52997 * 109.47551 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47270 * 179.97438 * 11 10 9 13 13 N 1.46896 * 109.46881 * 179.97438 * 12 11 10 14 14 C 1.46902 * 111.00078 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.47278 * 179.97438 * 14 13 12 16 16 O 1.21293 * 120.00198 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99935 * 179.97438 * 15 14 13 18 18 C 1.37100 * 119.99793 * 180.02562 * 17 15 14 19 19 H 1.08001 * 120.00221 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99883 * 180.02562 * 18 17 15 21 21 N 1.31416 * 119.99838 * 359.97438 * 20 18 17 22 22 Si 1.86789 * 120.00112 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47635 * 59.99696 * 22 20 18 24 24 H 1.48504 * 109.47543 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47042 * 299.99712 * 22 20 18 26 26 N 1.28463 * 124.88731 * 304.97814 * 3 2 1 27 27 H 1.09004 * 109.46922 * 299.99164 * 1 2 3 28 28 H 1.08997 * 109.47655 * 59.99750 * 1 2 3 29 29 H 1.09005 * 109.46970 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46922 * 240.00836 * 2 1 3 31 31 H 1.08997 * 109.47655 * 120.00250 * 2 1 3 32 32 H 1.08008 * 126.38238 * 359.97438 * 4 3 2 33 33 H 1.07997 * 127.25460 * 180.23812 * 5 4 3 34 34 H 0.97000 * 119.99736 * 0.27192 * 9 7 6 35 35 H 1.08998 * 109.46795 * 299.99885 * 10 9 7 36 36 H 1.09002 * 109.47196 * 59.99076 * 10 9 7 37 37 H 1.09007 * 109.46479 * 299.99856 * 11 10 9 38 38 H 1.08997 * 109.46852 * 59.99432 * 11 10 9 39 39 H 1.08992 * 109.46818 * 299.99508 * 12 11 10 40 40 H 1.08997 * 109.47123 * 59.99715 * 12 11 10 41 41 H 1.00897 * 111.00226 * 56.04233 * 13 12 11 42 42 H 1.09001 * 109.46944 * 299.99915 * 14 13 12 43 43 H 1.09000 * 109.46931 * 59.99999 * 14 13 12 44 44 H 0.96997 * 120.00245 * 0.02562 * 17 15 14 45 45 H 0.96994 * 119.99890 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.8749 1.8976 0.9071 5 6 3.0877 3.1904 0.5673 6 6 2.3009 3.4122 -0.5878 7 6 2.1870 4.6757 -1.3444 8 8 2.8043 5.6586 -0.9827 9 7 1.4029 4.7374 -2.4389 10 6 1.2947 5.9888 -3.1928 11 6 0.3501 5.7892 -4.3797 12 6 0.2365 7.0963 -5.1667 13 7 -0.6699 6.9043 -6.3066 14 6 -0.8040 8.1418 -7.0868 15 6 -1.7387 7.9065 -8.2452 16 8 -2.2438 6.8154 -8.4050 17 7 -2.0141 8.9088 -9.1032 18 6 -2.8648 8.6948 -10.1568 19 1 -3.3146 7.7233 -10.2991 20 6 -3.1484 9.7280 -11.0417 21 7 -2.6015 10.9103 -10.8683 22 14 -4.3080 9.4367 -12.4768 23 1 -5.6401 9.0295 -11.9622 24 1 -4.4429 10.6874 -13.2660 25 1 -3.7624 8.3615 -13.3437 26 7 1.6935 2.2754 -0.8634 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8932 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.3125 1.3750 1.7450 33 1 3.7223 3.9033 1.0726 34 1 0.9105 3.9531 -2.7275 35 1 0.9023 6.7714 -2.5434 36 1 2.2798 6.2796 -3.5577 37 1 0.7430 5.0066 -5.0290 38 1 -0.6350 5.4982 -4.0151 39 1 -0.1565 7.8784 -4.5172 40 1 1.2216 7.3877 -5.5313 41 1 -1.5715 6.5713 -5.9996 42 1 -1.2049 8.9308 -6.4505 43 1 0.1738 8.4411 -7.4643 44 1 -1.6104 9.7814 -8.9753 45 1 -2.7997 11.6316 -11.4858 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167634310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:08 Heat of formation + Delta-G solvation = -28.440304 kcal Electronic energy + Delta-G solvation = -25205.816675 eV Core-core repulsion = 21258.648568 eV Total energy + Delta-G solvation = -3947.168107 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.61539 -40.51358 -40.14497 -37.65314 -36.12932 -35.65545 -35.46066 -33.29723 -32.60984 -31.59523 -30.85530 -28.63506 -26.79489 -25.67457 -24.33021 -22.99804 -22.59595 -22.31726 -21.11057 -20.79693 -19.90075 -18.86423 -17.88615 -17.58908 -17.26392 -17.11861 -16.79836 -16.57212 -16.29409 -15.96912 -15.52454 -15.32133 -15.22925 -15.05298 -14.70155 -14.53336 -14.26267 -14.02364 -13.55707 -13.39954 -13.28200 -13.17161 -12.97727 -12.85283 -12.71884 -12.44348 -12.42642 -12.31094 -12.11663 -11.86586 -11.84101 -11.49929 -11.32187 -10.36052 -10.35328 -10.14219 -10.01760 -9.95787 -9.33313 -8.46270 -5.95424 0.51652 1.20915 1.40432 1.42230 1.53376 1.55120 2.05153 2.12995 2.30309 2.35071 2.94666 3.20845 3.33351 3.52463 3.87484 3.97916 3.99736 4.05934 4.12261 4.16082 4.29266 4.35125 4.37837 4.49039 4.56688 4.59073 4.68455 4.72988 4.76159 4.79841 4.82327 4.88607 5.14062 5.18739 5.23427 5.33093 5.40808 5.41562 5.88475 5.90756 6.09919 6.38209 6.42182 6.60141 6.90125 7.12340 7.12888 7.56072 8.11266 8.70847 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026257 B = 0.001512 C = 0.001436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.133758 B =18513.284895 C =19490.265824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.107 3.893 3 N -0.277 5.277 4 C 0.001 3.999 5 C -0.206 4.206 6 C -0.050 4.050 7 C 0.599 3.401 8 O -0.573 6.573 9 N -0.708 5.708 10 C 0.126 3.874 11 C -0.115 4.115 12 C 0.064 3.936 13 N -0.684 5.684 14 C 0.064 3.936 15 C 0.437 3.563 16 O -0.624 6.624 17 N -0.573 5.573 18 C -0.337 4.337 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.995 3.005 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.272 1.272 26 N -0.273 5.273 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.143 0.857 32 H 0.227 0.773 33 H 0.162 0.838 34 H 0.414 0.586 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.345 0.655 42 H 0.068 0.932 43 H 0.104 0.896 44 H 0.397 0.603 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.943 -20.044 26.824 35.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.011 4.011 3 N -0.066 5.066 4 C -0.142 4.142 5 C -0.235 4.235 6 C -0.209 4.209 7 C 0.385 3.615 8 O -0.452 6.452 9 N -0.359 5.359 10 C 0.002 3.998 11 C -0.154 4.154 12 C -0.065 4.065 13 N -0.317 5.317 14 C -0.068 4.068 15 C 0.224 3.776 16 O -0.510 6.510 17 N -0.210 5.210 18 C -0.467 4.467 19 H 0.097 0.903 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.818 3.182 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.198 1.198 26 N -0.111 5.111 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.160 0.840 32 H 0.244 0.756 33 H 0.179 0.821 34 H 0.251 0.749 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.164 0.836 42 H 0.086 0.914 43 H 0.122 0.878 44 H 0.231 0.769 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.724 -20.750 25.671 34.707 hybrid contribution -0.589 1.232 0.141 1.372 sum 10.135 -19.519 25.813 33.911 Atomic orbital electron populations 1.22066 0.93320 1.04530 1.02484 1.22477 0.96561 0.74803 1.07241 1.46128 1.31566 1.11153 1.17791 1.23509 0.97506 0.94533 0.98677 1.22016 1.05165 0.97820 0.98450 1.21870 1.04834 0.93125 1.01038 1.17195 0.78614 0.85756 0.79914 1.90764 1.47586 1.37192 1.69622 1.45812 1.47364 1.15469 1.27291 1.21295 1.00247 0.85681 0.92552 1.21584 0.99950 0.98475 0.95352 1.21892 0.97571 0.96638 0.90412 1.60055 1.17709 1.29469 1.24440 1.21539 0.99453 0.92474 0.93363 1.20891 0.85865 0.84600 0.86233 1.90483 1.57299 1.26234 1.77032 1.41932 1.42016 1.12458 1.24584 1.19660 1.23573 0.98596 1.04847 0.90264 1.26060 0.99552 0.94336 1.01305 1.69670 1.44597 1.02473 1.39323 0.84966 0.78111 0.77809 0.77303 1.19643 1.19459 1.19751 1.73389 1.22515 0.98212 1.16977 0.92567 0.92957 0.87897 0.87877 0.83954 0.75634 0.82050 0.74950 0.91334 0.91338 0.90459 0.90616 0.93799 0.90080 0.83645 0.91443 0.87774 0.76943 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 10.02 71.98 0.72 -0.09 16 2 C 0.11 0.34 7.12 86.38 0.61 0.96 16 3 N -0.28 -3.26 3.41 -347.94 -1.19 -4.45 16 4 C 0.00 0.01 11.40 83.54 0.95 0.96 16 5 C -0.21 -3.62 10.81 22.41 0.24 -3.38 16 6 C -0.05 -1.12 7.13 42.46 0.30 -0.81 16 7 C 0.60 15.52 7.83 86.75 0.68 16.20 16 8 O -0.57 -18.47 16.93 -3.95 -0.07 -18.54 16 9 N -0.71 -15.07 5.55 -466.10 -2.59 -17.66 16 10 C 0.13 2.55 5.67 86.38 0.49 3.04 16 11 C -0.12 -2.27 5.59 30.59 0.17 -2.09 16 12 C 0.06 1.46 5.69 86.30 0.49 1.95 16 13 N -0.68 -21.59 6.13 -517.96 -3.17 -24.76 16 14 C 0.06 2.23 6.17 85.55 0.53 2.75 16 15 C 0.44 21.12 7.82 87.65 0.69 21.80 16 16 O -0.62 -35.06 15.78 -3.07 -0.05 -35.11 16 17 N -0.57 -29.84 5.29 -306.98 -1.62 -31.46 16 18 C -0.34 -19.41 9.68 84.04 0.81 -18.59 16 19 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 20 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 21 N -0.92 -50.08 13.05 21.67 0.28 -49.79 16 22 Si 0.99 43.25 29.55 68.60 2.03 45.27 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 26 N -0.27 -5.13 11.36 -48.17 -0.55 -5.67 16 27 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.05 0.51 8.08 -2.39 -0.02 0.49 16 29 H 0.10 0.04 8.14 -2.38 -0.02 0.03 16 30 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.14 -0.61 8.04 -2.39 -0.02 -0.63 16 32 H 0.23 -0.03 8.06 -2.91 -0.02 -0.05 16 33 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 34 H 0.41 7.61 8.20 -92.71 -0.76 6.85 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 39 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.34 11.29 8.43 -89.70 -0.76 10.54 16 42 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.40 19.59 7.90 -92.71 -0.73 18.86 16 45 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -79.70 390.57 -0.98 -80.68 By element: Atomic # 1 Polarization: 40.22 SS G_CDS: -1.22 Total: 39.00 kcal Atomic # 6 Polarization: 15.32 SS G_CDS: 7.16 Total: 22.48 kcal Atomic # 7 Polarization: -124.96 SS G_CDS: -8.83 Total: -133.80 kcal Atomic # 8 Polarization: -53.53 SS G_CDS: -0.12 Total: -53.64 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -79.70 -0.98 -80.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167634310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.241 kcal (2) G-P(sol) polarization free energy of solvation -79.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds