Wall clock time and date at job start Tue Mar 31 2020 05:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37357 * 125.83363 * 2 1 4 4 N 1.29406 * 108.82758 * 179.67618 * 3 2 1 5 5 N 1.40173 * 108.13936 * 0.44878 * 4 3 2 6 6 C 1.46501 * 126.34706 * 179.80928 * 5 4 3 7 7 C 1.53001 * 109.47429 * 269.69470 * 6 5 4 8 8 C 1.50696 * 109.47085 * 180.02562 * 7 6 5 9 9 O 1.21284 * 120.00028 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00046 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00308 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.49987 * 35.05292 * 11 10 8 13 13 C 1.53034 * 109.52763 * 155.11033 * 11 10 8 14 14 C 1.53043 * 109.54096 * 181.29965 * 13 11 10 15 15 C 1.53192 * 109.33757 * 298.68118 * 14 13 11 16 16 N 1.46935 * 108.77544 * 54.61788 * 15 14 13 17 17 C 1.36937 * 120.62533 * 126.37007 * 16 15 14 18 18 H 1.08009 * 119.99440 * 207.67575 * 17 16 15 19 19 C 1.38803 * 120.00530 * 27.68794 * 17 16 15 20 20 N 1.31619 * 120.00080 * 17.36290 * 19 17 16 21 21 Si 1.86797 * 120.00079 * 197.36919 * 19 17 16 22 22 H 1.48501 * 109.47213 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47373 * 119.99468 * 21 19 17 24 24 H 1.48498 * 109.47465 * 239.99698 * 21 19 17 25 25 C 1.46930 * 118.73872 * 306.39125 * 16 15 14 26 26 C 1.34814 * 125.83144 * 179.97438 * 2 1 3 27 27 O 1.21815 * 126.30353 * 0.02562 * 26 2 1 28 28 H 1.08995 * 109.47381 * 270.03685 * 1 2 3 29 29 H 1.09005 * 109.47011 * 30.03922 * 1 2 3 30 30 H 1.09008 * 109.47355 * 150.03484 * 1 2 3 31 31 H 1.07998 * 125.58554 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.46756 * 149.69419 * 6 5 4 33 33 H 1.09002 * 109.46898 * 29.69786 * 6 5 4 34 34 H 1.08997 * 109.47101 * 59.99671 * 7 6 5 35 35 H 1.09004 * 109.46647 * 300.00314 * 7 6 5 36 36 H 0.97003 * 119.99891 * 359.97438 * 10 8 7 37 37 H 1.08996 * 109.43745 * 61.29163 * 13 11 10 38 38 H 1.08999 * 109.48342 * 301.33138 * 13 11 10 39 39 H 1.08992 * 109.49673 * 178.71551 * 14 13 11 40 40 H 1.09006 * 109.49684 * 58.64493 * 14 13 11 41 41 H 1.09001 * 109.59000 * 174.40667 * 15 14 13 42 42 H 1.09003 * 109.58825 * 294.83474 * 15 14 13 43 43 H 0.97006 * 120.00073 * 180.02562 * 20 19 17 44 44 H 1.08991 * 109.58471 * 173.39496 * 25 16 15 45 45 H 1.08999 * 109.58560 * 293.82377 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2691 1.1136 0.0000 4 7 3.5065 0.7351 0.0069 5 7 3.5343 -0.6663 0.0013 6 6 4.7313 -1.5111 0.0020 7 6 5.1487 -1.8055 -1.4402 8 6 6.3795 -2.6750 -1.4393 9 8 6.8745 -3.0243 -0.3886 10 7 6.9310 -3.0635 -2.6061 11 6 8.1272 -3.9092 -2.6053 12 1 8.0828 -4.6014 -1.7645 13 6 8.1957 -4.6996 -3.9139 14 6 9.4279 -5.6073 -3.8998 15 6 10.6904 -4.7470 -3.7872 16 7 10.5672 -3.8783 -2.6085 17 6 11.5448 -3.8606 -1.6497 18 1 11.2957 -3.6097 -0.6292 19 6 12.8557 -4.1649 -1.9894 20 7 13.2329 -4.1348 -3.2501 21 14 14.0848 -4.6174 -0.6575 22 1 13.4156 -4.5780 0.6676 23 1 14.6061 -5.9850 -0.9088 24 1 15.2099 -3.6483 -0.6722 25 6 9.3750 -3.0296 -2.4779 26 6 2.2542 -1.0930 0.0005 27 8 1.8805 -2.2524 0.0006 28 1 -0.3634 0.0007 1.0276 29 1 -0.3633 0.8897 -0.5145 30 1 -0.3634 -0.8903 -0.5133 31 1 1.9250 2.1373 -0.0004 32 1 4.5146 -2.4475 0.5160 33 1 5.5410 -0.9933 0.5162 34 1 5.3652 -0.8690 -1.9542 35 1 4.3388 -2.3233 -1.9543 36 1 6.5353 -2.7838 -3.4465 37 1 8.2645 -4.0071 -4.7528 38 1 7.2976 -5.3083 -4.0185 39 1 9.4635 -6.1866 -4.8223 40 1 9.3715 -6.2840 -3.0471 41 1 11.5628 -5.3910 -3.6769 42 1 10.7965 -4.1347 -4.6827 43 1 14.1490 -4.3478 -3.4875 44 1 9.3795 -2.5406 -1.5039 45 1 9.3738 -2.2774 -3.2668 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268208564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:38 Heat of formation + Delta-G solvation = 30.943350 kcal Electronic energy + Delta-G solvation = -27142.133046 eV Core-core repulsion = 23197.540008 eV Total energy + Delta-G solvation = -3944.593038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.70225 -39.72629 -37.52851 -37.42149 -35.91050 -34.29929 -33.04741 -32.37319 -30.46486 -30.26749 -28.61219 -27.70033 -25.26609 -24.97645 -22.78041 -22.13757 -21.88060 -21.25346 -20.10948 -19.27352 -18.01826 -17.18159 -16.75884 -16.71867 -16.34909 -15.85474 -15.61624 -15.30985 -14.84224 -14.69602 -14.17407 -14.08046 -13.65047 -13.49816 -13.24523 -13.19128 -12.95162 -12.91700 -12.54529 -12.37901 -12.31297 -12.18123 -11.79963 -11.43824 -11.07254 -10.87581 -10.76851 -10.51941 -10.44238 -10.23826 -10.19381 -9.95104 -9.88088 -9.60768 -9.50381 -8.85928 -8.80949 -8.38033 -6.65061 -5.75856 -3.17726 1.44530 1.62716 2.38266 2.76539 2.80677 3.40761 3.41995 3.49209 3.53783 4.09498 4.36496 4.54532 4.62078 4.62248 4.75067 4.89599 4.95807 5.03809 5.26780 5.32914 5.39364 5.41298 5.56033 5.57511 5.64516 5.68194 5.74591 5.91968 6.10208 6.17762 6.21536 6.26171 6.54772 6.63081 6.68893 6.71292 6.85958 7.01057 7.31045 7.37959 7.66728 7.72674 7.75734 7.86237 8.40945 8.49511 9.24801 9.87234 10.42751 11.32899 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023837 B = 0.002299 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.342623 B =12175.229444 C =12798.320992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.564 5.564 3 C 0.250 3.750 4 N -0.277 5.277 5 N -0.450 5.450 6 C 0.176 3.824 7 C -0.159 4.159 8 C 0.517 3.483 9 O -0.536 6.536 10 N -0.721 5.721 11 C 0.125 3.875 12 H 0.086 0.914 13 C -0.115 4.115 14 C -0.140 4.140 15 C 0.167 3.833 16 N -0.588 5.588 17 C -0.248 4.248 18 H 0.067 0.933 19 C 0.001 3.999 20 N -0.904 5.904 21 Si 0.902 3.098 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.291 1.291 25 C 0.143 3.857 26 C 0.641 3.359 27 O -0.552 6.552 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.231 0.769 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.395 0.605 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.090 0.910 42 H 0.019 0.981 43 H 0.253 0.747 44 H 0.058 0.942 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.257 10.608 0.837 28.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.294 5.294 3 C -0.050 4.050 4 N -0.098 5.098 5 N -0.270 5.270 6 C 0.055 3.945 7 C -0.200 4.200 8 C 0.302 3.698 9 O -0.413 6.413 10 N -0.371 5.371 11 C 0.020 3.980 12 H 0.105 0.895 13 C -0.153 4.153 14 C -0.180 4.180 15 C 0.041 3.959 16 N -0.311 5.311 17 C -0.378 4.378 18 H 0.085 0.915 19 C -0.198 4.198 20 N -0.549 5.549 21 Si 0.732 3.268 22 H -0.201 1.201 23 H -0.215 1.215 24 H -0.218 1.218 25 C 0.015 3.985 26 C 0.341 3.659 27 O -0.426 6.426 28 H 0.091 0.909 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.247 0.753 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.228 0.772 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.108 0.892 42 H 0.037 0.963 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -24.940 9.727 1.568 26.816 hybrid contribution -0.359 -0.127 0.023 0.381 sum -25.299 9.600 1.590 27.106 Atomic orbital electron populations 1.21817 0.74244 1.04717 1.03552 1.45964 1.08910 1.06752 1.67727 1.25955 0.85864 0.94743 0.98404 1.77052 1.18106 0.92131 1.22488 1.49089 1.06286 1.03063 1.68605 1.21233 0.83214 0.93671 0.96363 1.22030 0.97415 1.01440 0.99139 1.20173 0.84649 0.80654 0.84313 1.90759 1.63478 1.56087 1.30996 1.46127 1.30162 1.52885 1.07931 1.21767 0.84405 0.92987 0.98877 0.89548 1.21674 0.98657 0.98483 0.96474 1.22182 0.96788 0.98477 1.00506 1.20851 0.94475 0.92082 0.88479 1.44019 1.18712 1.44486 1.23885 1.19268 0.86665 1.42902 0.88935 0.91495 1.25023 0.96754 1.01850 0.96131 1.70053 1.16978 1.52092 1.15783 0.86213 0.81130 0.77865 0.81571 1.20145 1.21548 1.21757 1.21182 0.86155 0.91841 0.99323 1.16826 0.82198 0.85127 0.81784 1.91106 1.77708 1.15185 1.58569 0.90886 0.89313 0.89407 0.75327 0.87727 0.87538 0.88145 0.88661 0.77168 0.92271 0.93104 0.92726 0.92407 0.89232 0.96314 0.93740 0.92351 0.96521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.35 11.05 59.84 0.66 1.01 16 2 N -0.56 -4.22 3.14 -130.11 -0.41 -4.63 16 3 C 0.25 1.42 12.66 -89.12 -1.13 0.29 16 4 N -0.28 -2.65 12.53 29.87 0.37 -2.28 16 5 N -0.45 -5.21 3.63 -65.12 -0.24 -5.45 16 6 C 0.18 2.12 5.68 -4.04 -0.02 2.10 16 7 C -0.16 -1.77 6.02 -27.88 -0.17 -1.94 16 8 C 0.52 7.73 7.79 -10.99 -0.09 7.64 16 9 O -0.54 -10.29 15.65 5.55 0.09 -10.21 16 10 N -0.72 -10.30 5.08 -53.69 -0.27 -10.58 16 11 C 0.12 2.26 2.60 -67.81 -0.18 2.09 16 12 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 13 C -0.11 -1.87 5.36 -26.69 -0.14 -2.02 16 14 C -0.14 -2.64 6.08 -26.61 -0.16 -2.80 16 15 C 0.17 3.98 5.31 -3.71 -0.02 3.97 16 16 N -0.59 -15.14 3.00 -172.31 -0.52 -15.66 16 17 C -0.25 -7.06 9.58 -15.06 -0.14 -7.20 16 18 H 0.07 1.92 7.89 -52.48 -0.41 1.51 16 19 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 20 N -0.90 -26.55 11.19 55.49 0.62 -25.93 16 21 Si 0.90 22.31 29.59 -169.99 -5.03 17.28 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 C 0.14 3.14 6.09 -3.71 -0.02 3.12 16 26 C 0.64 7.77 8.60 -86.74 -0.75 7.02 16 27 O -0.55 -8.62 17.71 5.09 0.09 -8.53 16 28 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 30 H 0.09 0.41 8.08 -51.92 -0.42 -0.01 16 31 H 0.23 0.01 8.06 -52.49 -0.42 -0.41 16 32 H 0.10 1.38 8.07 -51.93 -0.42 0.96 16 33 H 0.11 1.30 8.10 -51.93 -0.42 0.88 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.40 4.34 8.60 -40.82 -0.35 3.99 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.09 2.40 6.03 -51.93 -0.31 2.08 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.06 1.37 7.93 -51.93 -0.41 0.96 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 374.64 15.07 5.65 5.65 Total: -1.00 -37.56 374.64 -8.82 -46.38 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.93 Total: 0.76 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: -2.24 Total: 13.19 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: -0.44 Total: -64.52 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.18 Total: -18.74 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.56 -8.82 -46.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268208564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.322 kcal (2) G-P(sol) polarization free energy of solvation -37.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds