Wall clock time and date at job start Tue Mar 31 2020 05:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42899 * 109.46848 * 2 1 4 4 C 1.42901 * 113.99589 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.30570 * 27.82794 * 4 3 2 6 6 C 1.54389 * 110.34483 * 265.53868 * 4 3 2 7 7 N 1.48142 * 104.61773 * 264.99540 * 6 4 3 8 8 C 1.34776 * 127.84000 * 140.41039 * 7 6 4 9 9 O 1.21597 * 120.00609 * 179.97438 * 8 7 6 10 10 C 1.47532 * 119.99720 * 359.97438 * 8 7 6 11 11 C 1.36590 * 125.76821 * 179.71330 * 10 8 7 12 12 N 1.34815 * 106.83730 * 179.89508 * 11 10 8 13 13 C 1.46506 * 126.59755 * 180.15112 * 12 11 10 14 14 N 1.40212 * 106.81206 * 0.35725 * 12 11 10 15 15 N 1.28760 * 108.36512 * 359.77102 * 14 12 11 16 16 C 1.48150 * 104.32668 * 320.41477 * 7 6 4 17 17 C 1.54290 * 110.34285 * 150.00326 * 4 3 2 18 18 H 1.08999 * 110.33916 * 359.88970 * 17 4 3 19 19 C 1.53006 * 110.34075 * 237.74317 * 17 4 3 20 20 N 1.46498 * 109.46726 * 174.99883 * 19 17 4 21 21 C 1.36939 * 119.99903 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99744 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00055 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99866 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00114 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47118 * 89.99647 * 25 23 21 27 27 H 1.48500 * 109.47181 * 209.99852 * 25 23 21 28 28 H 1.48499 * 109.47130 * 329.99897 * 25 23 21 29 29 H 1.09003 * 109.47057 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46862 * 299.99681 * 1 2 3 31 31 H 1.08999 * 109.47050 * 59.99662 * 1 2 3 32 32 H 1.09003 * 109.47028 * 240.00435 * 2 1 3 33 33 H 1.08999 * 109.47050 * 120.00337 * 2 1 3 34 34 H 1.08998 * 110.40789 * 23.78536 * 6 4 3 35 35 H 1.09009 * 110.40612 * 146.21296 * 6 4 3 36 36 H 1.08001 * 126.58551 * 0.03956 * 11 10 8 37 37 H 1.08999 * 109.46648 * 270.27250 * 13 12 11 38 38 H 1.09005 * 109.46840 * 30.27155 * 13 12 11 39 39 H 1.08999 * 109.47353 * 150.27172 * 13 12 11 40 40 H 1.08999 * 110.40590 * 280.80034 * 16 7 6 41 41 H 1.09002 * 110.40678 * 158.36557 * 16 7 6 42 42 H 1.08995 * 109.46794 * 294.99857 * 19 17 4 43 43 H 1.09000 * 109.47314 * 54.99991 * 19 17 4 44 44 H 0.96998 * 120.00310 * 359.97438 * 20 19 17 45 45 H 0.97001 * 119.99726 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8795 0.5887 -0.4763 6 6 3.9565 1.6149 1.4440 7 7 4.0886 3.0775 1.6389 8 6 3.7940 3.7947 2.7413 9 8 3.9592 4.9993 2.7452 10 6 3.2711 3.1180 3.9435 11 6 2.9404 3.7254 5.1213 12 7 2.5050 2.7566 5.9516 13 6 2.0374 2.9317 7.3290 14 7 2.5902 1.5485 5.2451 15 7 3.0450 1.7989 4.0668 16 6 4.6178 3.5732 0.3470 17 6 3.8670 2.7513 -0.7227 18 1 2.9946 3.2985 -1.0801 19 6 4.7995 2.4185 -1.8892 20 7 5.1059 3.6423 -2.6338 21 6 5.9276 3.5904 -3.7281 22 1 6.3494 2.6471 -4.0423 23 6 6.2175 4.7499 -4.4340 24 7 7.0077 4.7000 -5.4854 25 14 5.4874 6.3812 -3.8909 26 1 6.4045 7.0366 -2.9242 27 1 5.3047 7.2601 -5.0739 28 1 4.1726 6.1438 -3.2428 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.2424 1.1996 2.1551 35 1 4.9262 1.1283 1.5496 36 1 3.0115 4.7798 5.3440 37 1 2.8813 2.8428 8.0131 38 1 1.5847 3.9174 7.4364 39 1 1.2984 2.1651 7.5620 40 1 5.6907 3.3924 0.2813 41 1 4.4026 4.6354 0.2304 42 1 5.7231 1.9865 -1.5041 43 1 4.3120 1.7028 -2.5513 44 1 4.7262 4.4893 -2.3523 45 1 7.2106 5.5103 -5.9785 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691318816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:49 Heat of formation + Delta-G solvation = 20.848416 kcal Electronic energy + Delta-G solvation = -27783.600846 eV Core-core repulsion = 23838.570058 eV Total energy + Delta-G solvation = -3945.030787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.25655 -41.14722 -39.49243 -37.73576 -36.51158 -35.61563 -33.98144 -32.62909 -32.10014 -31.34884 -29.43558 -28.85210 -27.32351 -25.52684 -23.90794 -23.85474 -23.22347 -22.99473 -21.45837 -20.88302 -19.67223 -18.62768 -18.13741 -17.45693 -17.28699 -16.89528 -16.62046 -16.52785 -16.13580 -15.78098 -15.61152 -15.50311 -15.17369 -14.75052 -14.57058 -14.15925 -14.07353 -13.90871 -13.80534 -13.52994 -13.47237 -13.25525 -13.00830 -12.92003 -12.70043 -12.33725 -12.28503 -12.24418 -12.02239 -11.90084 -11.80011 -11.64827 -11.34299 -11.28712 -10.97995 -10.60074 -10.41473 -9.74344 -9.29458 -8.01826 -5.34889 0.11754 0.55216 1.14302 1.39858 1.41202 1.47771 1.80260 2.14388 2.48803 2.63824 3.02722 3.30051 3.35881 3.48795 3.53378 3.78228 3.89564 3.93742 3.97995 4.15331 4.22850 4.27254 4.33869 4.37817 4.46682 4.52010 4.53899 4.57120 4.64456 4.68787 4.75348 4.77351 4.90653 4.94205 5.05737 5.07292 5.21711 5.23298 5.29644 5.43039 5.77122 6.22001 6.34076 6.37920 6.75322 7.01577 7.08180 7.84097 8.01895 9.19475 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013970 B = 0.003372 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.745613 B = 8301.856581 C = 9730.149737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.047 3.953 3 O -0.396 6.396 4 C 0.089 3.911 5 H 0.105 0.895 6 C 0.077 3.923 7 N -0.606 5.606 8 C 0.618 3.382 9 O -0.575 6.575 10 C -0.122 4.122 11 C 0.111 3.889 12 N -0.349 5.349 13 C 0.074 3.926 14 N -0.089 5.089 15 N -0.219 5.219 16 C 0.116 3.884 17 C -0.100 4.100 18 H 0.079 0.921 19 C 0.170 3.830 20 N -0.759 5.759 21 C -0.229 4.229 22 H 0.064 0.936 23 C -0.060 4.060 24 N -0.982 5.982 25 Si 0.947 3.053 26 H -0.278 1.278 27 H -0.295 1.295 28 H -0.257 1.257 29 H 0.092 0.908 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.236 0.764 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.110 0.890 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.043 0.957 43 H 0.035 0.965 44 H 0.364 0.636 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.272 -8.610 29.638 34.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 O -0.316 6.316 4 C 0.030 3.970 5 H 0.122 0.878 6 C -0.045 4.045 7 N -0.337 5.337 8 C 0.406 3.594 9 O -0.455 6.455 10 C -0.261 4.261 11 C -0.048 4.048 12 N -0.134 5.134 13 C -0.064 4.064 14 N -0.069 5.069 15 N -0.092 5.092 16 C -0.006 4.006 17 C -0.119 4.119 18 H 0.098 0.902 19 C 0.044 3.956 20 N -0.405 5.405 21 C -0.360 4.360 22 H 0.082 0.918 23 C -0.252 4.252 24 N -0.632 5.632 25 Si 0.774 3.226 26 H -0.205 1.205 27 H -0.221 1.221 28 H -0.182 1.182 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.132 0.868 35 H 0.115 0.885 36 H 0.253 0.747 37 H 0.127 0.873 38 H 0.147 0.853 39 H 0.129 0.871 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.197 0.803 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -14.475 -9.409 29.739 34.388 hybrid contribution 0.216 2.041 -0.371 2.086 sum -14.260 -7.368 29.368 33.468 Atomic orbital electron populations 1.21738 0.93302 1.03279 1.02140 1.22750 0.96125 0.82864 1.01143 1.87967 1.20468 1.28244 1.94888 1.22982 0.81853 0.97883 0.94314 0.87754 1.23363 1.03476 0.79909 0.97792 1.48681 1.62770 1.09946 1.12267 1.16671 0.76749 0.84990 0.80991 1.90789 1.56855 1.14399 1.83417 1.21244 1.16721 0.90757 0.97418 1.23781 0.94111 0.98321 0.88568 1.50708 1.42501 1.05448 1.14743 1.22745 1.02953 1.07122 0.73584 1.81902 1.21582 1.04491 0.98931 1.74524 1.09561 1.14249 1.10913 1.22389 0.98443 0.99027 0.80780 1.22279 0.98483 0.96574 0.94607 0.90238 1.20802 0.95921 0.88386 0.90531 1.42743 1.58270 1.06388 1.33056 1.19038 1.19338 0.94909 1.02747 0.91809 1.25414 1.00717 1.01166 0.97885 1.69866 1.42525 1.28647 1.22209 0.85528 0.79296 0.80503 0.77231 1.20464 1.22132 1.18187 0.88906 0.92878 0.92784 0.92269 0.92033 0.86764 0.88479 0.74746 0.87281 0.85346 0.87126 0.89638 0.91341 0.93863 0.94725 0.80307 0.93348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 10.28 71.98 0.74 -1.89 16 2 C 0.05 0.95 6.50 71.98 0.47 1.42 16 3 O -0.40 -10.78 9.95 -148.98 -1.48 -12.26 16 4 C 0.09 2.28 3.20 31.50 0.10 2.38 16 5 H 0.10 2.24 7.38 -2.39 -0.02 2.23 16 6 C 0.08 1.91 6.41 86.54 0.55 2.46 16 7 N -0.61 -18.11 3.32 -811.69 -2.69 -20.81 16 8 C 0.62 19.08 7.91 86.69 0.69 19.77 16 9 O -0.57 -20.70 17.13 -4.02 -0.07 -20.77 16 10 C -0.12 -3.00 6.87 40.82 0.28 -2.72 16 11 C 0.11 1.77 11.31 83.85 0.95 2.71 16 12 N -0.35 -4.59 4.03 -368.57 -1.49 -6.07 16 13 C 0.07 0.09 11.51 127.77 1.47 1.56 16 14 N -0.09 -1.86 13.78 37.02 0.51 -1.35 16 15 N -0.22 -5.40 9.36 -49.99 -0.47 -5.87 16 16 C 0.12 3.74 6.41 86.53 0.55 4.29 16 17 C -0.10 -3.14 2.90 -9.88 -0.03 -3.17 16 18 H 0.08 2.79 7.98 -2.39 -0.02 2.77 16 19 C 0.17 6.26 5.38 86.38 0.46 6.73 16 20 N -0.76 -35.79 5.28 -343.45 -1.81 -37.60 16 21 C -0.23 -13.15 10.47 84.03 0.88 -12.27 16 22 H 0.06 3.94 8.06 -2.91 -0.02 3.91 16 23 C -0.06 -3.60 5.50 84.86 0.47 -3.14 16 24 N -0.98 -63.59 13.97 21.65 0.30 -63.28 16 25 Si 0.95 47.03 27.74 68.60 1.90 48.93 16 26 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 27 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 28 H -0.26 -11.81 6.52 99.48 0.65 -11.17 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.06 1.08 8.11 -2.39 -0.02 1.06 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 34 H 0.11 2.85 5.38 -2.39 -0.01 2.84 16 35 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 36 H 0.24 2.10 8.06 -2.91 -0.02 2.08 16 37 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 38 H 0.13 -0.55 8.14 -2.38 -0.02 -0.57 16 39 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 40 H 0.09 2.72 7.75 -2.39 -0.02 2.70 16 41 H 0.07 2.44 7.88 -2.39 -0.02 2.42 16 42 H 0.04 1.54 7.98 -2.39 -0.02 1.52 16 43 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.36 16.88 5.47 -92.71 -0.51 16.37 16 45 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 Total: -1.00 -81.92 375.59 2.73 -79.20 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.44 Total: 21.74 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: 7.59 Total: 18.14 kcal Atomic # 7 Polarization: -129.34 SS G_CDS: -5.65 Total: -134.98 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -1.55 Total: -33.03 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.90 Total: 48.93 kcal Total: -81.92 2.73 -79.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691318816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.044 kcal (2) G-P(sol) polarization free energy of solvation -81.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds