Wall clock time and date at job start Tue Mar 31 2020 04:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46717 * 2 1 4 4 C 1.53001 * 109.47333 * 119.99822 * 2 1 3 5 5 N 1.46906 * 109.46841 * 295.00188 * 4 2 1 6 6 C 1.46903 * 110.99749 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.46899 * 179.97438 * 6 5 4 8 8 O 1.21285 * 120.00323 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99481 * 179.97438 * 7 6 5 10 10 C 1.37101 * 119.99382 * 180.02562 * 9 7 6 11 11 H 1.08000 * 120.00407 * 359.97438 * 10 9 7 12 12 C 1.38949 * 119.99478 * 180.02562 * 10 9 7 13 13 N 1.31418 * 120.00116 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00200 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46918 * 90.00646 * 14 12 10 16 16 H 1.48501 * 109.47048 * 210.00169 * 14 12 10 17 17 H 1.48496 * 109.47125 * 330.00199 * 14 12 10 18 18 C 1.53005 * 109.47226 * 240.00254 * 2 1 3 19 19 N 1.46496 * 109.47059 * 64.99476 * 18 2 1 20 20 C 1.34774 * 119.99544 * 180.02562 * 19 18 2 21 21 O 1.21279 * 120.00472 * 0.02562 * 20 19 18 22 22 C 1.50706 * 120.00020 * 180.02562 * 20 19 18 23 23 C 1.50698 * 109.47294 * 180.02562 * 22 20 19 24 24 N 1.30504 * 125.64414 * 304.68865 * 23 22 20 25 25 C 1.34137 * 109.24972 * 179.89531 * 24 23 22 26 26 C 1.34661 * 108.02081 * 0.37107 * 25 24 23 27 27 N 1.35037 * 125.65469 * 124.99624 * 23 22 20 28 28 H 0.97007 * 126.39654 * 359.97438 * 27 23 22 29 29 H 1.08998 * 109.46849 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47229 * 300.00183 * 1 2 3 31 31 H 1.09000 * 109.47218 * 59.99895 * 1 2 3 32 32 H 1.08993 * 109.46748 * 54.99817 * 4 2 1 33 33 H 1.08995 * 109.47139 * 175.00320 * 4 2 1 34 34 H 1.00900 * 111.00062 * 303.95052 * 5 4 2 35 35 H 1.08998 * 109.46778 * 300.00276 * 6 5 4 36 36 H 1.09002 * 109.47086 * 59.99579 * 6 5 4 37 37 H 0.96998 * 120.00058 * 0.02562 * 9 7 6 38 38 H 0.96993 * 120.00520 * 179.97438 * 13 12 10 39 39 H 1.08996 * 109.46524 * 304.99582 * 18 2 1 40 40 H 1.08992 * 109.46876 * 184.99915 * 18 2 1 41 41 H 0.96994 * 120.00700 * 0.02562 * 19 18 2 42 42 H 1.09001 * 109.46953 * 299.99667 * 22 20 19 43 43 H 1.09000 * 109.47318 * 59.99264 * 22 20 19 44 44 H 1.08001 * 125.98362 * 180.11296 * 25 24 23 45 45 H 1.08001 * 126.58815 * 179.81735 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 1.6514 0.0376 2.4456 6 6 2.1248 -0.6270 3.6673 7 6 1.7088 0.1789 4.8708 8 8 1.0795 1.2054 4.7254 9 7 2.0352 -0.2418 6.1090 10 6 1.6563 0.4911 7.2039 11 1 1.0967 1.4056 7.0744 12 6 1.9933 0.0577 8.4804 13 7 1.6297 0.7598 9.5301 14 14 2.9620 -1.5238 8.7045 15 1 4.4154 -1.2197 8.6935 16 1 2.5967 -2.1484 10.0013 17 1 2.6437 -2.4603 7.5969 18 6 2.0400 -0.7212 -1.2493 19 7 1.6524 0.0354 -2.4424 20 6 1.9955 -0.4136 -3.6659 21 8 2.6248 -1.4442 -3.7793 22 6 1.5973 0.3649 -4.8933 23 6 2.0985 -0.3462 -6.1238 24 7 3.3372 -0.6864 -6.3541 25 6 3.4129 -1.3023 -7.5433 26 6 2.1755 -1.3381 -8.0734 27 7 1.3413 -0.7317 -7.1734 28 1 0.3849 -0.6029 -7.2713 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6054 -1.7197 1.2952 33 1 3.1263 -0.7994 1.2056 34 1 1.9881 0.9874 2.3967 35 1 1.6904 -1.6247 3.7297 36 1 3.2117 -0.7049 3.6406 37 1 2.5382 -1.0630 6.2253 38 1 1.8646 0.4571 10.4211 39 1 1.6055 -1.7197 -1.2951 40 1 3.1263 -0.7994 -1.2056 41 1 1.1488 0.8594 -2.3518 42 1 0.5110 0.4438 -4.9369 43 1 2.0325 1.3632 -4.8475 44 1 4.3098 -1.6963 -7.9979 45 1 1.8952 -1.7640 -9.0255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753635864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:20 Heat of formation + Delta-G solvation = -13.213927 kcal Electronic energy + Delta-G solvation = -25578.470200 eV Core-core repulsion = 21631.962359 eV Total energy + Delta-G solvation = -3946.507841 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.40467 -39.89032 -38.54904 -37.27559 -34.94753 -33.91630 -32.93878 -32.74067 -31.99302 -31.62139 -28.20027 -27.54200 -26.42487 -24.71959 -23.04409 -21.94796 -21.48382 -20.84660 -20.31889 -19.34929 -18.43281 -18.27157 -17.40010 -16.42646 -16.08541 -15.82588 -15.69717 -15.24698 -15.03167 -14.67361 -14.43002 -14.31386 -14.20618 -13.86908 -13.56983 -13.45456 -13.27855 -13.17484 -12.81253 -12.62567 -12.45121 -12.07968 -12.00814 -11.77662 -11.24744 -11.11326 -11.08099 -10.92550 -10.59307 -10.36677 -10.28078 -10.13674 -9.97603 -9.57266 -9.32480 -8.78428 -8.59503 -8.19815 -8.13488 -6.31230 -3.82723 1.62237 2.36718 2.51209 2.80381 3.03260 3.07112 3.10308 3.15548 3.74282 3.87457 4.07294 4.11261 4.39609 4.49411 4.66173 4.73607 4.75405 4.83514 4.84218 5.00912 5.07544 5.21889 5.29222 5.30986 5.42328 5.56052 5.61277 5.62845 5.69521 5.79005 5.81941 5.83759 5.93925 6.04623 6.19479 6.34775 6.39380 6.91678 7.07169 7.19304 7.55784 7.58532 7.78036 7.96101 8.14332 8.59716 8.94818 9.42448 9.82624 10.81878 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.043100 B = 0.001543 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.500551 B =18137.692544 C =18557.073679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.078 0.922 4 C 0.065 3.935 5 N -0.666 5.666 6 C 0.048 3.952 7 C 0.450 3.550 8 O -0.565 6.565 9 N -0.591 5.591 10 C -0.306 4.306 11 H 0.120 0.880 12 C 0.042 3.958 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.269 1.269 18 C 0.126 3.874 19 N -0.729 5.729 20 C 0.515 3.485 21 O -0.514 6.514 22 C -0.055 4.055 23 C 0.216 3.784 24 N -0.461 5.461 25 C -0.026 4.026 26 C -0.056 4.056 27 N -0.567 5.567 28 H 0.417 0.583 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.030 0.970 34 H 0.350 0.650 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.371 0.629 38 H 0.273 0.727 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.401 0.599 42 H 0.107 0.893 43 H 0.120 0.880 44 H 0.170 0.830 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.930 -3.904 -33.351 33.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.096 0.904 4 C -0.065 4.065 5 N -0.298 5.298 6 C -0.085 4.085 7 C 0.236 3.764 8 O -0.447 6.447 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.161 4.161 13 N -0.521 5.521 14 Si 0.706 3.294 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.195 1.195 18 C 0.002 3.998 19 N -0.382 5.382 20 C 0.299 3.701 21 O -0.388 6.388 22 C -0.097 4.097 23 C -0.048 4.048 24 N -0.179 5.179 25 C -0.175 4.175 26 C -0.190 4.190 27 N -0.170 5.170 28 H 0.255 0.745 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.170 0.830 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.203 0.797 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.235 0.765 42 H 0.125 0.875 43 H 0.138 0.862 44 H 0.187 0.813 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -0.801 -4.089 -32.727 32.991 hybrid contribution 0.346 -0.887 -0.251 0.985 sum -0.455 -4.976 -32.979 33.355 Atomic orbital electron populations 1.21759 0.93727 1.02129 1.02118 1.21344 0.97598 1.00034 0.92919 0.90392 1.21901 0.97431 0.97946 0.89187 1.60030 1.64174 1.05931 0.99706 1.21701 0.97867 0.98688 0.90224 1.19710 0.85183 0.87878 0.83640 1.90557 1.42822 1.25906 1.85441 1.42213 1.51137 1.23666 1.06008 1.19434 1.33746 1.07549 0.82698 0.86287 1.25036 0.97849 0.98077 0.95154 1.69621 1.45607 1.38550 0.98371 0.86671 0.80795 0.83291 0.78633 1.19660 1.20168 1.19460 1.21375 1.00131 0.95316 0.82962 1.45926 1.58517 1.28119 1.05644 1.20091 0.79990 0.85979 0.84054 1.90791 1.37970 1.23801 1.86239 1.19920 1.02436 0.99633 0.87677 1.22314 0.87365 1.03785 0.91384 1.70258 1.17598 1.14485 1.15604 1.22408 0.97276 1.04527 0.93279 1.22750 0.91699 1.06412 0.98106 1.43216 1.11285 1.46011 1.16521 0.74498 0.92846 0.90405 0.93674 0.90737 0.95169 0.83050 0.89470 0.93731 0.79674 0.91616 0.91304 0.91400 0.76459 0.87461 0.86168 0.81305 0.80548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.95 37.16 0.33 -0.92 16 2 C -0.10 -0.87 2.57 -90.62 -0.23 -1.10 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 4 C 0.07 0.70 5.08 -3.82 -0.02 0.68 16 5 N -0.67 -9.62 5.58 -115.06 -0.64 -10.26 16 6 C 0.05 0.77 6.17 -4.98 -0.03 0.74 16 7 C 0.45 10.09 7.82 -10.99 -0.09 10.00 16 8 O -0.57 -14.95 15.78 5.55 0.09 -14.87 16 9 N -0.59 -14.01 5.09 -10.96 -0.06 -14.06 16 10 C -0.31 -8.63 10.16 -14.93 -0.15 -8.78 16 11 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 12 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 13 N -0.88 -25.72 13.96 55.50 0.77 -24.94 16 14 Si 0.88 19.36 27.74 -169.99 -4.71 14.64 16 15 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 16 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 17 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 18 C 0.13 1.10 5.07 -4.04 -0.02 1.08 16 19 N -0.73 -5.28 5.28 -60.30 -0.32 -5.60 16 20 C 0.52 4.83 7.82 -10.98 -0.09 4.75 16 21 O -0.51 -7.45 15.56 5.56 0.09 -7.37 16 22 C -0.05 -0.32 6.33 -29.03 -0.18 -0.50 16 23 C 0.22 1.92 6.95 -155.42 -1.08 0.84 16 24 N -0.46 -5.58 10.60 -10.82 -0.11 -5.69 16 25 C -0.03 -0.25 11.87 -17.81 -0.21 -0.46 16 26 C -0.06 -0.36 12.04 -16.57 -0.20 -0.56 16 27 N -0.57 -3.38 6.15 -10.23 -0.06 -3.44 16 28 H 0.42 0.94 8.96 -40.82 -0.37 0.57 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.89 7.75 -51.93 -0.40 0.49 16 31 H 0.04 0.31 7.18 -51.93 -0.37 -0.06 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.35 5.23 8.43 -39.29 -0.33 4.90 16 35 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.37 7.72 5.76 -40.82 -0.24 7.48 16 38 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.40 1.79 7.66 -40.82 -0.31 1.48 16 42 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 45 H 0.18 0.51 8.06 -52.49 -0.42 0.08 16 LS Contribution 381.75 15.07 5.75 5.75 Total: -1.00 -39.12 381.75 -7.92 -47.04 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -6.65 Total: 11.98 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -2.07 Total: 6.81 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -0.42 Total: -64.00 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.17 Total: -22.23 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.71 Total: 14.64 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -39.12 -7.92 -47.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753635864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.830 kcal (2) G-P(sol) polarization free energy of solvation -39.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds