Wall clock time and date at job start Tue Mar 31 2020 04:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46717 * 2 1 4 4 C 1.53001 * 109.47333 * 119.99822 * 2 1 3 5 5 N 1.46906 * 109.46841 * 295.00188 * 4 2 1 6 6 C 1.46903 * 110.99749 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.46899 * 179.97438 * 6 5 4 8 8 O 1.21285 * 120.00323 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99481 * 179.97438 * 7 6 5 10 10 C 1.37101 * 119.99382 * 180.02562 * 9 7 6 11 11 H 1.08000 * 120.00407 * 359.97438 * 10 9 7 12 12 C 1.38949 * 119.99478 * 180.02562 * 10 9 7 13 13 N 1.31418 * 120.00116 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00200 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46918 * 90.00646 * 14 12 10 16 16 H 1.48501 * 109.47048 * 210.00169 * 14 12 10 17 17 H 1.48496 * 109.47125 * 330.00199 * 14 12 10 18 18 C 1.53005 * 109.47226 * 240.00254 * 2 1 3 19 19 N 1.46496 * 109.47059 * 64.99476 * 18 2 1 20 20 C 1.34774 * 119.99544 * 180.02562 * 19 18 2 21 21 O 1.21279 * 120.00472 * 0.02562 * 20 19 18 22 22 C 1.50706 * 120.00020 * 180.02562 * 20 19 18 23 23 C 1.50698 * 109.47294 * 180.02562 * 22 20 19 24 24 N 1.30504 * 125.64414 * 304.68865 * 23 22 20 25 25 C 1.34137 * 109.24972 * 179.89531 * 24 23 22 26 26 C 1.34661 * 108.02081 * 0.37107 * 25 24 23 27 27 N 1.35037 * 125.65469 * 124.99624 * 23 22 20 28 28 H 0.97007 * 126.39654 * 359.97438 * 27 23 22 29 29 H 1.08998 * 109.46849 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47229 * 300.00183 * 1 2 3 31 31 H 1.09000 * 109.47218 * 59.99895 * 1 2 3 32 32 H 1.08993 * 109.46748 * 54.99817 * 4 2 1 33 33 H 1.08995 * 109.47139 * 175.00320 * 4 2 1 34 34 H 1.00900 * 111.00062 * 303.95052 * 5 4 2 35 35 H 1.08998 * 109.46778 * 300.00276 * 6 5 4 36 36 H 1.09002 * 109.47086 * 59.99579 * 6 5 4 37 37 H 0.96998 * 120.00058 * 0.02562 * 9 7 6 38 38 H 0.96993 * 120.00520 * 179.97438 * 13 12 10 39 39 H 1.08996 * 109.46524 * 304.99582 * 18 2 1 40 40 H 1.08992 * 109.46876 * 184.99915 * 18 2 1 41 41 H 0.96994 * 120.00700 * 0.02562 * 19 18 2 42 42 H 1.09001 * 109.46953 * 299.99667 * 22 20 19 43 43 H 1.09000 * 109.47318 * 59.99264 * 22 20 19 44 44 H 1.08001 * 125.98362 * 180.11296 * 25 24 23 45 45 H 1.08001 * 126.58815 * 179.81735 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 1.6514 0.0376 2.4456 6 6 2.1248 -0.6270 3.6673 7 6 1.7088 0.1789 4.8708 8 8 1.0795 1.2054 4.7254 9 7 2.0352 -0.2418 6.1090 10 6 1.6563 0.4911 7.2039 11 1 1.0967 1.4056 7.0744 12 6 1.9933 0.0577 8.4804 13 7 1.6297 0.7598 9.5301 14 14 2.9620 -1.5238 8.7045 15 1 4.4154 -1.2197 8.6935 16 1 2.5967 -2.1484 10.0013 17 1 2.6437 -2.4603 7.5969 18 6 2.0400 -0.7212 -1.2493 19 7 1.6524 0.0354 -2.4424 20 6 1.9955 -0.4136 -3.6659 21 8 2.6248 -1.4442 -3.7793 22 6 1.5973 0.3649 -4.8933 23 6 2.0985 -0.3462 -6.1238 24 7 3.3372 -0.6864 -6.3541 25 6 3.4129 -1.3023 -7.5433 26 6 2.1755 -1.3381 -8.0734 27 7 1.3413 -0.7317 -7.1734 28 1 0.3849 -0.6029 -7.2713 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6054 -1.7197 1.2952 33 1 3.1263 -0.7994 1.2056 34 1 1.9881 0.9874 2.3967 35 1 1.6904 -1.6247 3.7297 36 1 3.2117 -0.7049 3.6406 37 1 2.5382 -1.0630 6.2253 38 1 1.8646 0.4571 10.4211 39 1 1.6055 -1.7197 -1.2951 40 1 3.1263 -0.7994 -1.2056 41 1 1.1488 0.8594 -2.3518 42 1 0.5110 0.4438 -4.9369 43 1 2.0325 1.3632 -4.8475 44 1 4.3098 -1.6963 -7.9979 45 1 1.8952 -1.7640 -9.0255 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753635864.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:20 Heat of formation + Delta-G solvation = -47.015334 kcal Electronic energy + Delta-G solvation = -25579.935939 eV Core-core repulsion = 21631.962359 eV Total energy + Delta-G solvation = -3947.973580 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.94267 -40.62901 -40.27844 -38.24560 -36.18888 -35.64341 -33.79087 -33.60006 -33.36880 -32.63084 -29.08001 -28.59994 -27.24608 -26.24361 -24.28136 -22.49130 -22.13933 -21.62446 -21.26818 -20.94575 -20.19097 -18.89203 -18.09074 -17.74870 -17.04170 -16.92733 -16.72589 -16.54394 -15.98641 -15.75286 -15.52243 -15.17436 -14.99348 -14.90465 -14.71382 -14.46549 -14.36152 -14.27300 -13.92042 -13.77158 -13.45729 -13.24614 -13.07371 -12.94042 -12.82650 -12.41005 -12.00115 -11.96286 -11.90222 -11.67481 -11.50579 -10.98135 -10.95770 -10.84121 -10.42103 -10.24071 -10.03610 -9.32881 -9.28454 -8.40825 -6.01593 1.10668 1.31140 1.35806 1.44869 1.70655 1.96729 1.97084 2.23362 2.26753 2.51074 2.79290 3.15961 3.39965 3.44557 3.90143 3.92135 4.06376 4.09438 4.12243 4.20139 4.42271 4.45435 4.46851 4.54115 4.56301 4.62487 4.67313 4.79527 4.82103 4.87637 5.01456 5.12973 5.16147 5.31791 5.50027 5.53313 5.58520 5.84200 5.91354 6.05723 6.41996 6.53199 6.60527 6.64999 6.88763 7.22995 7.33839 7.40729 7.97104 8.76758 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.043100 B = 0.001543 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.500551 B =18137.692544 C =18557.073679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.084 0.916 4 C 0.066 3.934 5 N -0.680 5.680 6 C 0.061 3.939 7 C 0.449 3.551 8 O -0.613 6.613 9 N -0.592 5.592 10 C -0.329 4.329 11 H 0.056 0.944 12 C -0.014 4.014 13 N -0.934 5.934 14 Si 0.964 3.036 15 H -0.258 1.258 16 H -0.276 1.276 17 H -0.232 1.232 18 C 0.134 3.866 19 N -0.715 5.715 20 C 0.512 3.488 21 O -0.572 6.572 22 C -0.049 4.049 23 C 0.199 3.801 24 N -0.517 5.517 25 C -0.071 4.071 26 C -0.037 4.037 27 N -0.554 5.554 28 H 0.436 0.564 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.345 0.655 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.389 0.611 38 H 0.279 0.721 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.417 0.583 42 H 0.151 0.849 43 H 0.141 0.859 44 H 0.174 0.826 45 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.838 -5.781 -35.545 36.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 H 0.102 0.898 4 C -0.063 4.063 5 N -0.313 5.313 6 C -0.071 4.071 7 C 0.237 3.763 8 O -0.497 6.497 9 N -0.234 5.234 10 C -0.459 4.459 11 H 0.074 0.926 12 C -0.212 4.212 13 N -0.575 5.575 14 Si 0.784 3.216 15 H -0.182 1.182 16 H -0.201 1.201 17 H -0.155 1.155 18 C 0.009 3.991 19 N -0.369 5.369 20 C 0.298 3.702 21 O -0.451 6.451 22 C -0.090 4.090 23 C -0.066 4.066 24 N -0.237 5.237 25 C -0.218 4.218 26 C -0.171 4.171 27 N -0.159 5.159 28 H 0.277 0.723 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.164 0.836 35 H 0.130 0.870 36 H 0.093 0.907 37 H 0.225 0.775 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.255 0.745 42 H 0.169 0.831 43 H 0.159 0.841 44 H 0.191 0.809 45 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -0.752 -5.940 -34.950 35.459 hybrid contribution 0.234 -0.190 0.358 0.468 sum -0.518 -6.130 -34.592 35.134 Atomic orbital electron populations 1.21705 0.93736 1.01875 1.02000 1.21208 0.97355 1.00081 0.92007 0.89768 1.21977 0.98241 0.97843 0.88266 1.60031 1.64822 1.06036 1.00361 1.21623 0.99743 0.98148 0.87600 1.20988 0.83054 0.87398 0.84852 1.90536 1.44509 1.28300 1.86374 1.42050 1.51863 1.24128 1.05344 1.19023 1.34805 1.06874 0.85155 0.92575 1.26092 0.98591 1.02702 0.93854 1.69801 1.47189 1.41243 0.99256 0.85377 0.78941 0.77649 0.79639 1.18207 1.20067 1.15514 1.21179 0.99326 0.95154 0.83434 1.45805 1.57915 1.28345 1.04792 1.20735 0.78829 0.85382 0.85276 1.90771 1.40695 1.26516 1.87078 1.20072 1.05137 0.99236 0.84554 1.22765 0.87095 1.03984 0.92729 1.70164 1.20011 1.16333 1.17217 1.22748 0.99107 1.06339 0.93623 1.23271 0.90684 1.04392 0.98788 1.43192 1.12168 1.44946 1.15593 0.72255 0.93153 0.92993 0.91308 0.90219 0.94058 0.83629 0.87045 0.90660 0.77506 0.91166 0.92139 0.92570 0.74543 0.83080 0.84131 0.80905 0.76881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 8.95 71.98 0.64 -1.54 16 2 C -0.09 -1.35 2.57 -10.79 -0.03 -1.38 16 3 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 4 C 0.07 1.26 5.08 86.30 0.44 1.70 16 5 N -0.68 -18.51 5.58 -517.93 -2.89 -21.40 16 6 C 0.06 1.82 6.17 85.56 0.53 2.34 16 7 C 0.45 20.00 7.82 87.66 0.69 20.68 16 8 O -0.61 -33.46 15.78 -3.05 -0.05 -33.51 16 9 N -0.59 -27.80 5.09 -306.99 -1.56 -29.36 16 10 C -0.33 -19.28 10.16 84.04 0.85 -18.43 16 11 H 0.06 3.91 7.39 -2.91 -0.02 3.89 16 12 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 13 N -0.93 -56.31 13.96 21.66 0.30 -56.01 16 14 Si 0.96 38.81 27.74 68.60 1.90 40.71 16 15 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 16 H -0.28 -11.04 7.11 99.48 0.71 -10.34 16 17 H -0.23 -7.88 6.52 99.48 0.65 -7.23 16 18 C 0.13 2.13 5.07 86.38 0.44 2.56 16 19 N -0.71 -8.85 5.28 -463.07 -2.45 -11.30 16 20 C 0.51 8.88 7.82 87.66 0.69 9.57 16 21 O -0.57 -16.66 15.56 -3.02 -0.05 -16.70 16 22 C -0.05 -0.44 6.33 29.10 0.18 -0.26 16 23 C 0.20 3.28 6.95 138.13 0.96 4.24 16 24 N -0.52 -12.67 10.60 -188.13 -1.99 -14.66 16 25 C -0.07 -1.34 11.87 83.52 0.99 -0.35 16 26 C -0.04 -0.41 12.04 83.09 1.00 0.59 16 27 N -0.55 -5.34 6.15 -186.28 -1.15 -6.48 16 28 H 0.44 0.55 8.96 -92.70 -0.83 -0.28 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 1.14 7.75 -2.39 -0.02 1.12 16 31 H 0.07 0.76 7.18 -2.39 -0.02 0.74 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.35 9.99 8.43 -89.69 -0.76 9.23 16 35 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.39 15.14 5.76 -92.71 -0.53 14.61 16 38 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 39 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 41 H 0.42 2.44 7.66 -92.71 -0.71 1.73 16 42 H 0.15 -0.05 8.14 -2.39 -0.02 -0.07 16 43 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.17 2.69 8.06 -2.91 -0.02 2.66 16 45 H 0.21 0.55 8.06 -2.91 -0.02 0.52 16 Total: -1.00 -93.67 381.75 -1.92 -95.59 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: -1.84 Total: 33.67 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 7.85 Total: 19.45 kcal Atomic # 7 Polarization: -129.48 SS G_CDS: -9.74 Total: -139.21 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -0.10 Total: -50.21 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 1.90 Total: 40.71 kcal Total: -93.67 -1.92 -95.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753635864.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.577 kcal (2) G-P(sol) polarization free energy of solvation -93.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds