Wall clock time and date at job start Tue Mar 31 2020 04:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46930 * 2 1 4 4 C 1.52993 * 109.47660 * 239.99619 * 2 1 3 5 5 N 1.46905 * 109.47039 * 65.00109 * 4 2 1 6 6 C 1.46901 * 110.99870 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.46943 * 180.02562 * 6 5 4 8 8 O 1.21292 * 120.00024 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99767 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99759 * 179.97438 * 9 7 6 11 11 H 1.08000 * 120.00171 * 359.97438 * 10 9 7 12 12 C 1.38951 * 120.00074 * 179.97438 * 10 9 7 13 13 N 1.31416 * 119.99768 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00310 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47100 * 90.00351 * 14 12 10 16 16 H 1.48501 * 109.47251 * 210.00371 * 14 12 10 17 17 H 1.48503 * 109.46881 * 330.00485 * 14 12 10 18 18 C 1.53002 * 109.47018 * 119.99296 * 2 1 3 19 19 N 1.46497 * 109.47145 * 295.00697 * 18 2 1 20 20 C 1.34779 * 119.99900 * 179.97438 * 19 18 2 21 21 O 1.21279 * 120.00214 * 359.97438 * 20 19 18 22 22 C 1.50706 * 120.00162 * 179.97438 * 20 19 18 23 23 C 1.50700 * 109.47226 * 179.97438 * 22 20 19 24 24 N 1.30496 * 125.64869 * 304.69026 * 23 22 20 25 25 C 1.34131 * 109.25688 * 179.89292 * 24 23 22 26 26 C 1.34672 * 108.01543 * 0.37311 * 25 24 23 27 27 N 1.35041 * 125.64636 * 124.99753 * 23 22 20 28 28 H 0.96997 * 126.40356 * 359.97438 * 27 23 22 29 29 H 1.09008 * 109.46827 * 60.00928 * 1 2 3 30 30 H 1.08998 * 109.46936 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47633 * 300.00550 * 1 2 3 32 32 H 1.09001 * 109.47393 * 305.00390 * 4 2 1 33 33 H 1.08998 * 109.47408 * 185.00036 * 4 2 1 34 34 H 1.00901 * 110.99869 * 56.04956 * 5 4 2 35 35 H 1.09004 * 109.47031 * 299.99620 * 6 5 4 36 36 H 1.08995 * 109.47111 * 59.99900 * 6 5 4 37 37 H 0.96997 * 120.00713 * 359.97438 * 9 7 6 38 38 H 0.96999 * 119.99907 * 179.97438 * 13 12 10 39 39 H 1.09002 * 109.46730 * 55.00366 * 18 2 1 40 40 H 1.08994 * 109.47589 * 175.00151 * 18 2 1 41 41 H 0.97000 * 120.00674 * 359.97438 * 19 18 2 42 42 H 1.09002 * 109.46964 * 300.00250 * 22 20 19 43 43 H 1.08996 * 109.46834 * 59.99779 * 22 20 19 44 44 H 1.07996 * 125.99436 * 180.11669 * 25 24 23 45 45 H 1.07998 * 126.58808 * 179.81637 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.6515 0.0374 -2.4456 6 6 2.1250 -0.6273 -3.6671 7 6 1.7091 0.1784 -4.8708 8 8 1.0798 1.2051 -4.7254 9 7 2.0356 -0.2423 -6.1088 10 6 1.6568 0.4904 -7.2039 11 1 1.0965 1.4046 -7.0745 12 6 1.9939 0.0570 -8.4803 13 7 2.6753 -1.0556 -8.6378 14 14 1.4772 1.0550 -9.9725 15 1 2.5365 2.0434 -10.2979 16 1 1.2753 0.1466 -11.1298 17 1 0.2089 1.7682 -9.6759 18 6 2.0399 -0.7211 1.2494 19 7 1.6522 0.0355 2.4424 20 6 1.9953 -0.4133 3.6660 21 8 2.6246 -1.4438 3.7795 22 6 1.5970 0.3653 4.8933 23 6 2.0981 -0.3457 6.1239 24 7 1.8457 -1.5860 6.4415 25 6 2.4559 -1.8792 7.5994 26 6 3.1046 -0.7762 8.0193 27 7 2.8780 0.1969 7.0836 28 1 3.2146 1.1063 7.1059 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6055 -1.7198 -1.2951 33 1 3.1264 -0.7995 -1.2054 34 1 1.9883 0.9872 -2.3967 35 1 3.2119 -0.7051 -3.6404 36 1 1.6907 -1.6250 -3.7295 37 1 2.5386 -1.0635 -6.2252 38 1 2.9103 -1.3584 -9.5289 39 1 1.6053 -1.7197 1.2953 40 1 3.1262 -0.7994 1.2058 41 1 1.1486 0.8596 2.3517 42 1 2.0323 1.3636 4.8474 43 1 0.5108 0.4443 4.9368 44 1 2.4282 -2.8314 8.1082 45 1 3.6914 -0.6784 8.9206 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753635865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:22 Heat of formation + Delta-G solvation = -20.385148 kcal Electronic energy + Delta-G solvation = -25522.750141 eV Core-core repulsion = 21575.931332 eV Total energy + Delta-G solvation = -3946.818809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.38453 -39.85590 -38.36702 -37.18815 -34.87464 -33.85954 -32.90650 -32.70663 -31.92782 -31.18233 -28.15792 -27.38099 -26.35679 -24.74968 -23.11902 -21.92922 -21.45652 -20.79869 -20.28502 -19.18931 -18.35480 -17.88177 -17.36143 -16.39836 -16.09085 -15.80513 -15.59024 -15.15429 -14.80783 -14.66298 -14.36908 -14.27408 -14.13593 -13.80467 -13.65584 -13.39962 -13.32631 -13.27646 -12.71587 -12.46508 -12.32637 -11.89822 -11.66966 -11.51524 -11.14222 -11.04921 -10.98272 -10.86491 -10.39320 -10.34724 -10.25821 -10.21676 -10.10469 -9.50715 -9.28891 -8.76416 -8.45948 -8.05062 -7.95462 -6.41408 -3.82326 1.64148 2.39500 2.53776 2.82446 3.13219 3.17909 3.26630 3.32604 3.89533 3.91390 4.09489 4.31239 4.41607 4.52943 4.71987 4.77142 4.83818 4.86689 4.96457 5.09312 5.17893 5.26402 5.32634 5.35632 5.48397 5.62848 5.69510 5.71396 5.76955 5.88055 5.90838 5.99614 6.09261 6.24028 6.27551 6.40964 6.41399 6.93651 7.20310 7.22523 7.55359 7.65580 7.80118 7.99214 8.06609 8.61566 9.18092 9.54802 10.06117 10.76313 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.053644 B = 0.001470 C = 0.001453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.836724 B =19044.041073 C =19265.362298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.076 0.924 4 C 0.065 3.935 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.564 5.564 10 C -0.300 4.300 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.269 1.269 18 C 0.126 3.874 19 N -0.728 5.728 20 C 0.515 3.485 21 O -0.514 6.514 22 C -0.055 4.055 23 C 0.216 3.784 24 N -0.460 5.460 25 C -0.026 4.026 26 C -0.056 4.056 27 N -0.567 5.567 28 H 0.417 0.583 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.029 0.971 34 H 0.348 0.652 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.401 0.599 42 H 0.107 0.893 43 H 0.120 0.880 44 H 0.170 0.830 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.220 3.019 30.623 30.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.118 4.118 3 H 0.094 0.906 4 C -0.065 4.065 5 N -0.298 5.298 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.121 0.879 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.205 1.205 16 H -0.209 1.209 17 H -0.194 1.194 18 C 0.002 3.998 19 N -0.382 5.382 20 C 0.299 3.701 21 O -0.388 6.388 22 C -0.097 4.097 23 C -0.048 4.048 24 N -0.179 5.179 25 C -0.175 4.175 26 C -0.190 4.190 27 N -0.171 5.171 28 H 0.255 0.745 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.167 0.833 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.226 0.774 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.235 0.765 42 H 0.125 0.875 43 H 0.138 0.862 44 H 0.187 0.813 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.204 1.963 30.128 30.192 hybrid contribution 1.609 1.413 -0.326 2.166 sum 1.813 3.377 29.802 30.047 Atomic orbital electron populations 1.21760 0.93684 1.02256 1.02052 1.21337 0.97655 0.99871 0.92956 0.90573 1.21900 0.97331 0.98026 0.89221 1.60036 1.64166 1.05801 0.99792 1.21667 0.97750 0.98674 0.90107 1.19812 0.85533 0.87923 0.84091 1.90515 1.44133 1.26446 1.85756 1.41867 1.49512 1.24213 1.04447 1.19706 1.32907 1.06720 0.83635 0.87925 1.25264 0.96923 0.96631 0.99108 1.69615 1.38924 1.21675 1.24071 0.85856 0.79142 0.79031 0.80242 1.20451 1.20918 1.19402 1.21386 0.99934 0.95544 0.82944 1.45932 1.58532 1.28076 1.05650 1.20090 0.80106 0.85933 0.84017 1.90792 1.38445 1.23370 1.86175 1.19921 1.03850 0.98258 0.87638 1.22316 0.98073 0.91045 0.93391 1.70252 1.23115 1.11207 1.13340 1.22409 1.00988 0.99209 0.94865 1.22752 1.08317 0.90038 0.97890 1.43218 1.40740 1.13872 1.19224 0.74512 0.90455 0.92734 0.93671 0.90692 0.95311 0.83288 0.93899 0.89563 0.77446 0.91874 0.91094 0.91582 0.76490 0.87488 0.86172 0.81303 0.80561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.95 37.16 0.33 -1.03 16 2 C -0.10 -0.92 2.57 -90.62 -0.23 -1.15 16 3 H 0.08 0.67 8.14 -51.92 -0.42 0.25 16 4 C 0.07 0.75 5.07 -3.82 -0.02 0.73 16 5 N -0.67 -10.18 5.58 -115.06 -0.64 -10.82 16 6 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 7 C 0.44 10.33 7.82 -10.99 -0.09 10.25 16 8 O -0.58 -15.69 15.78 5.55 0.09 -15.60 16 9 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 10 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 11 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.55 13.05 55.50 0.72 -23.82 16 14 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 C 0.13 1.16 5.06 -4.04 -0.02 1.14 16 19 N -0.73 -5.53 5.28 -60.29 -0.32 -5.85 16 20 C 0.51 4.98 7.82 -10.98 -0.09 4.90 16 21 O -0.51 -7.61 15.56 5.56 0.09 -7.53 16 22 C -0.05 -0.33 6.33 -29.03 -0.18 -0.51 16 23 C 0.22 1.96 6.95 -155.42 -1.08 0.88 16 24 N -0.46 -5.66 10.60 -10.82 -0.11 -5.77 16 25 C -0.03 -0.25 11.87 -17.81 -0.21 -0.46 16 26 C -0.06 -0.37 12.04 -16.56 -0.20 -0.57 16 27 N -0.57 -3.48 6.15 -10.23 -0.06 -3.54 16 28 H 0.42 1.01 8.96 -40.82 -0.37 0.65 16 29 H 0.08 0.93 7.75 -51.92 -0.40 0.53 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.34 7.18 -51.93 -0.37 -0.03 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.35 5.46 8.43 -39.29 -0.33 5.13 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 38 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.40 1.92 7.66 -40.82 -0.31 1.61 16 42 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.18 0.54 8.06 -52.49 -0.42 0.11 16 LS Contribution 384.87 15.07 5.80 5.80 Total: -1.00 -37.88 384.87 -8.27 -46.15 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -6.69 Total: 12.33 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -2.06 Total: 7.01 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: -0.47 Total: -64.15 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: 0.17 Total: -23.12 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.88 -8.27 -46.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753635865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.763 kcal (2) G-P(sol) polarization free energy of solvation -37.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds