Wall clock time and date at job start Tue Mar 31 2020 04:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47209 * 2 1 4 4 C 1.53000 * 109.47212 * 119.99589 * 2 1 3 5 5 N 1.46907 * 109.46939 * 174.99809 * 4 2 1 6 6 C 1.46901 * 110.99679 * 66.05007 * 5 4 2 7 7 C 1.46893 * 110.99808 * 190.00244 * 5 4 2 8 8 C 1.50699 * 109.47490 * 170.00520 * 7 5 4 9 9 O 1.21300 * 119.99282 * 359.97438 * 8 7 5 10 10 N 1.34772 * 120.00626 * 179.97438 * 8 7 5 11 11 C 1.37101 * 120.00031 * 179.97438 * 10 8 7 12 12 H 1.08000 * 120.00167 * 0.02562 * 11 10 8 13 13 C 1.38954 * 119.99804 * 179.97438 * 11 10 8 14 14 N 1.31408 * 119.99933 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99677 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.47127 * 90.00374 * 15 13 11 17 17 H 1.48504 * 109.46941 * 209.99897 * 15 13 11 18 18 H 1.48496 * 109.47486 * 330.00238 * 15 13 11 19 19 N 1.46501 * 109.47014 * 239.99913 * 2 1 3 20 20 C 1.34769 * 119.99854 * 85.00041 * 19 2 1 21 21 O 1.21285 * 120.00559 * 359.97438 * 20 19 2 22 22 C 1.50699 * 120.00037 * 180.02562 * 20 19 2 23 23 C 1.50704 * 109.47511 * 179.97438 * 22 20 19 24 24 C 1.34664 * 126.58651 * 275.03761 * 23 22 20 25 25 N 1.34134 * 108.01786 * 179.74146 * 24 23 22 26 26 C 1.30496 * 109.25675 * 0.37372 * 25 24 23 27 27 N 1.35047 * 108.70161 * 359.62603 * 26 25 24 28 28 H 0.96996 * 126.40541 * 180.20735 * 27 26 25 29 29 H 1.08999 * 109.47284 * 59.99936 * 1 2 3 30 30 H 1.08996 * 109.46783 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47105 * 299.99735 * 1 2 3 32 32 H 1.08994 * 109.47407 * 295.00289 * 4 2 1 33 33 H 1.09006 * 109.47092 * 55.00447 * 4 2 1 34 34 H 1.09004 * 109.47308 * 59.99649 * 6 5 4 35 35 H 1.09000 * 109.47108 * 179.97438 * 6 5 4 36 36 H 1.08995 * 109.46898 * 299.99819 * 6 5 4 37 37 H 1.09005 * 109.47503 * 290.00121 * 7 5 4 38 38 H 1.08995 * 109.47563 * 49.99971 * 7 5 4 39 39 H 0.96998 * 119.99724 * 0.02562 * 10 8 7 40 40 H 0.97000 * 119.99703 * 180.02562 * 14 13 11 41 41 H 0.96999 * 119.99913 * 264.99619 * 19 2 1 42 42 H 1.08992 * 109.47512 * 59.99585 * 22 20 19 43 43 H 1.09004 * 109.47075 * 299.99537 * 22 20 19 44 44 H 1.07998 * 125.99171 * 359.92955 * 24 23 22 45 45 H 1.08002 * 125.65353 * 179.89694 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5041 -0.8266 1.1904 6 6 4.1311 0.4994 1.2719 7 6 4.0108 -1.7142 2.2454 8 6 5.4725 -1.9936 2.0079 9 8 6.0365 -1.5019 1.0532 10 7 6.1531 -2.7897 2.8561 11 6 7.4828 -3.0441 2.6396 12 1 7.9850 -2.6064 1.7896 13 6 8.1845 -3.8645 3.5145 14 7 7.5736 -4.3967 4.5490 15 14 9.9963 -4.2106 3.2199 16 1 10.8156 -3.1863 3.9164 17 1 10.3350 -5.5572 3.7465 18 1 10.2789 -4.1635 1.7628 19 7 2.0183 -0.6906 -1.1962 20 6 2.1470 -0.0183 -2.3571 21 8 1.8582 1.1584 -2.4117 22 6 2.6488 -0.7288 -3.5877 23 6 2.6990 0.2393 -4.7415 24 6 1.6816 0.5639 -5.5618 25 7 2.1350 1.4606 -6.4505 26 6 3.3967 1.6979 -6.2169 27 7 3.7874 0.9584 -5.1565 28 1 4.6736 0.9399 -4.7628 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7517 -0.1583 2.1370 33 1 1.6055 -1.7198 1.2952 34 1 3.8524 0.9759 2.2118 35 1 5.2148 0.3923 1.2265 36 1 3.7911 1.1139 0.4383 37 1 3.8859 -1.2336 3.2158 38 1 3.4546 -2.6515 2.2300 39 1 5.7019 -3.1831 3.6193 40 1 8.0636 -4.9691 5.1599 41 1 2.2491 -1.6318 -1.1526 42 1 1.9760 -1.5506 -3.8325 43 1 3.6480 -1.1213 -3.3986 44 1 0.6760 0.1733 -5.5110 45 1 4.0236 2.3769 -6.7759 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754328959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:44 Heat of formation + Delta-G solvation = -8.766212 kcal Electronic energy + Delta-G solvation = -27117.544180 eV Core-core repulsion = 23171.229207 eV Total energy + Delta-G solvation = -3946.314974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.13164 -39.81495 -38.64273 -37.02671 -34.73877 -33.82744 -32.97582 -32.13207 -31.31055 -30.77838 -28.06096 -27.10275 -26.95881 -24.86783 -22.90394 -21.81501 -21.41081 -20.65743 -20.30605 -19.21552 -18.04729 -17.89628 -17.25964 -16.31946 -16.05923 -15.51840 -15.12730 -14.93410 -14.85042 -14.64496 -14.29318 -14.07538 -13.83215 -13.65607 -13.54541 -13.46644 -13.16540 -12.88280 -12.74255 -12.21542 -12.16984 -12.02649 -11.83232 -11.55733 -11.42315 -11.29727 -10.98684 -10.76793 -10.44609 -10.27957 -10.14562 -10.09349 -9.86038 -9.53852 -9.03080 -8.53484 -8.46239 -8.04918 -7.94260 -6.47873 -3.88844 1.89494 2.65341 2.94918 3.07932 3.12566 3.21828 3.26922 3.35049 3.83495 3.89357 4.18346 4.45201 4.67374 4.71238 4.84219 4.90951 5.01397 5.09062 5.16870 5.22195 5.25118 5.33245 5.39110 5.47260 5.52887 5.57440 5.65614 5.67684 5.88815 5.90449 5.92661 6.05389 6.10241 6.21164 6.48457 6.52540 6.62944 7.16976 7.25623 7.27878 7.49031 7.56122 7.95968 7.99934 8.26474 8.55260 9.11938 9.48082 9.99613 10.69791 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014066 B = 0.002639 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.208238 B =10606.774074 C =12145.054199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 H 0.086 0.914 4 C 0.042 3.958 5 N -0.514 5.514 6 C 0.021 3.979 7 C 0.045 3.955 8 C 0.444 3.556 9 O -0.579 6.579 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.023 3.977 14 N -0.901 5.901 15 Si 0.929 3.071 16 H -0.278 1.278 17 H -0.283 1.283 18 H -0.270 1.270 19 N -0.705 5.705 20 C 0.516 3.484 21 O -0.540 6.540 22 C -0.069 4.069 23 C 0.000 4.000 24 C -0.012 4.012 25 N -0.497 5.497 26 C 0.183 3.817 27 N -0.561 5.561 28 H 0.420 0.580 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.014 0.986 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.047 0.953 38 H 0.088 0.912 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.405 0.595 42 H 0.116 0.884 43 H 0.105 0.895 44 H 0.165 0.835 45 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.360 5.180 -10.360 16.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.104 0.896 4 C -0.087 4.087 5 N -0.238 5.238 6 C -0.126 4.126 7 C -0.087 4.087 8 C 0.229 3.771 9 O -0.463 6.463 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.120 0.880 13 C -0.179 4.179 14 N -0.542 5.542 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 N -0.356 5.356 20 C 0.301 3.699 21 O -0.416 6.416 22 C -0.110 4.110 23 C -0.116 4.116 24 C -0.160 4.160 25 N -0.216 5.216 26 C -0.100 4.100 27 N -0.164 5.164 28 H 0.258 0.742 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.033 0.967 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.106 0.894 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.240 0.760 42 H 0.134 0.866 43 H 0.123 0.877 44 H 0.183 0.817 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -12.489 6.385 -11.974 18.442 hybrid contribution 1.486 -0.948 2.236 2.847 sum -11.003 5.437 -9.738 15.667 Atomic orbital electron populations 1.22149 0.95096 1.02207 1.02588 1.20916 0.93271 0.97575 0.83928 0.89606 1.22512 0.89201 1.00908 0.96099 1.61580 1.03145 1.12184 1.46902 1.22553 1.02969 0.88530 0.98580 1.21882 0.96369 0.97541 0.92884 1.19716 0.87668 0.84190 0.85519 1.90481 1.70037 1.54367 1.31418 1.41875 1.10396 1.42780 1.24988 1.19677 0.84943 1.27224 1.11033 0.87962 1.25261 1.00494 0.96678 0.95484 1.69607 1.37412 1.32920 1.14310 0.85867 0.82045 0.77613 0.78823 1.20428 1.20893 1.19419 1.45768 1.66673 1.14392 1.08767 1.20385 0.77753 0.87359 0.84399 1.90722 1.49985 1.15901 1.85042 1.20050 1.04732 0.96671 0.89527 1.20479 0.88811 1.01744 1.00615 1.21967 0.98921 0.99899 0.95263 1.70252 1.08641 1.16303 1.26364 1.24896 0.93612 0.99869 0.91668 1.43230 1.12536 1.34223 1.26429 0.74216 0.91846 0.92290 0.91750 0.93567 0.90213 0.96736 0.88653 0.92216 0.93478 0.89414 0.77508 0.91837 0.75971 0.86609 0.87707 0.81727 0.77712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 2 C 0.15 1.61 2.35 -67.93 -0.16 1.45 16 3 H 0.09 1.13 6.23 -51.93 -0.32 0.81 16 4 C 0.04 0.46 4.52 -3.82 -0.02 0.44 16 5 N -0.51 -7.57 4.22 -244.37 -1.03 -8.60 16 6 C 0.02 0.34 8.96 60.07 0.54 0.88 16 7 C 0.04 0.72 5.45 -4.98 -0.03 0.70 16 8 C 0.44 9.81 7.47 -10.99 -0.08 9.73 16 9 O -0.58 -14.63 13.91 5.54 0.08 -14.55 16 10 N -0.56 -13.64 5.29 -10.96 -0.06 -13.70 16 11 C -0.30 -8.04 9.68 -14.93 -0.14 -8.19 16 12 H 0.10 2.89 7.16 -52.49 -0.38 2.51 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -23.87 13.05 55.50 0.72 -23.14 16 15 Si 0.93 20.48 29.55 -169.99 -5.02 15.45 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 19 N -0.70 -7.49 4.80 -53.81 -0.26 -7.75 16 20 C 0.52 6.18 7.79 -10.99 -0.09 6.09 16 21 O -0.54 -8.60 15.70 5.55 0.09 -8.51 16 22 C -0.07 -0.63 6.26 -29.03 -0.18 -0.81 16 23 C 0.00 0.00 5.73 -81.60 -0.47 -0.47 16 24 C -0.01 -0.15 11.79 -17.81 -0.21 -0.36 16 25 N -0.50 -6.61 11.25 -14.66 -0.16 -6.78 16 26 C 0.18 1.89 13.04 -90.37 -1.18 0.71 16 27 N -0.56 -5.52 6.15 -10.30 -0.06 -5.58 16 28 H 0.42 3.11 8.96 -40.82 -0.37 2.74 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.48 8.12 -51.93 -0.42 0.06 16 33 H 0.08 0.76 7.93 -51.93 -0.41 0.35 16 34 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.09 1.84 5.82 -51.93 -0.30 1.54 16 36 H 0.06 0.91 6.58 -51.93 -0.34 0.56 16 37 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 38 H 0.09 1.25 7.93 -51.93 -0.41 0.84 16 39 H 0.39 9.09 7.90 -40.82 -0.32 8.77 16 40 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 41 H 0.41 3.80 8.60 -40.82 -0.35 3.45 16 42 H 0.12 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 45 H 0.21 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 379.91 15.07 5.73 5.73 Total: -1.00 -35.01 379.91 -8.31 -43.32 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -6.57 Total: 14.57 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: -1.76 Total: 9.55 kcal Atomic # 7 Polarization: -64.70 SS G_CDS: -0.85 Total: -65.56 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: 0.16 Total: -23.07 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.01 -8.31 -43.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754328959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.558 kcal (2) G-P(sol) polarization free energy of solvation -35.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds