Wall clock time and date at job start Tue Mar 31 2020 04:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46856 * 2 1 4 4 C 1.52996 * 109.47072 * 240.00268 * 2 1 3 5 5 N 1.46893 * 109.47665 * 184.99792 * 4 2 1 6 6 C 1.46901 * 111.00162 * 293.95679 * 5 4 2 7 7 C 1.46899 * 111.00387 * 169.99939 * 5 4 2 8 8 C 1.50707 * 109.47116 * 190.00214 * 7 5 4 9 9 O 1.21296 * 119.99641 * 359.97438 * 8 7 5 10 10 N 1.34773 * 120.00095 * 180.02562 * 8 7 5 11 11 C 1.37096 * 119.99956 * 179.97438 * 10 8 7 12 12 H 1.07992 * 120.00088 * 359.97438 * 11 10 8 13 13 C 1.38951 * 119.99721 * 179.97438 * 11 10 8 14 14 N 1.31407 * 120.00416 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99796 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47428 * 60.00045 * 15 13 11 17 17 H 1.48506 * 109.47236 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47383 * 299.99984 * 15 13 11 19 19 N 1.46501 * 109.47387 * 120.00178 * 2 1 3 20 20 C 1.34769 * 119.99854 * 275.00122 * 19 2 1 21 21 O 1.21285 * 120.00559 * 359.97438 * 20 19 2 22 22 C 1.50699 * 120.00037 * 180.02562 * 20 19 2 23 23 C 1.50704 * 109.47511 * 179.97438 * 22 20 19 24 24 C 1.34664 * 126.58651 * 275.03761 * 23 22 20 25 25 N 1.34134 * 108.01786 * 179.74146 * 24 23 22 26 26 C 1.30496 * 109.25675 * 0.37372 * 25 24 23 27 27 N 1.35047 * 108.70161 * 359.62603 * 26 25 24 28 28 H 0.96997 * 126.40535 * 180.25138 * 27 26 25 29 29 H 1.08995 * 109.47163 * 59.99406 * 1 2 3 30 30 H 1.08996 * 109.46886 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46873 * 299.99806 * 1 2 3 32 32 H 1.09007 * 109.46894 * 305.00231 * 4 2 1 33 33 H 1.09001 * 109.47075 * 64.99601 * 4 2 1 34 34 H 1.09001 * 109.47495 * 59.99123 * 6 5 4 35 35 H 1.08996 * 109.47313 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.46983 * 299.99899 * 6 5 4 37 37 H 1.08993 * 109.46958 * 309.99857 * 7 5 4 38 38 H 1.08996 * 109.47162 * 70.00380 * 7 5 4 39 39 H 0.96998 * 119.99840 * 359.97438 * 10 8 7 40 40 H 0.96999 * 120.00533 * 179.97438 * 14 13 11 41 41 H 0.96999 * 119.99913 * 94.99699 * 19 2 1 42 42 H 1.08992 * 109.47512 * 59.99585 * 22 20 19 43 43 H 1.09004 * 109.47075 * 299.99537 * 22 20 19 44 44 H 1.07998 * 125.99171 * 359.92955 * 24 23 22 45 45 H 1.08002 * 125.65353 * 179.89694 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5040 -0.8266 -1.1906 6 6 4.1310 0.4993 -1.2721 7 6 4.0106 -1.7143 -2.2457 8 6 5.4724 -1.9937 -2.0081 9 8 6.0366 -1.5013 -1.0539 10 7 6.1529 -2.7898 -2.8564 11 6 7.4828 -3.0435 -2.6405 12 1 7.9852 -2.6051 -1.7910 13 6 8.1842 -3.8647 -3.5148 14 7 7.5730 -4.3977 -4.5488 15 14 9.9960 -4.2109 -3.2203 16 1 10.1664 -4.8658 -1.8984 17 1 10.5084 -5.1078 -4.2873 18 1 10.7539 -2.9340 -3.2415 19 7 2.0184 -0.6906 1.1961 20 6 2.1471 -0.0183 2.3570 21 8 1.8591 1.1586 2.4115 22 6 2.6501 -0.7286 3.5873 23 6 2.7013 0.2398 4.7409 24 6 3.7076 1.0848 5.0355 25 7 3.3616 1.7759 6.1318 26 6 2.1826 1.3855 6.5323 27 7 1.7335 0.4301 5.6901 28 1 0.8839 -0.0343 5.7469 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6053 -1.7198 -1.2952 33 1 1.7516 -0.1582 -2.1369 34 1 3.7911 1.1139 -0.4385 35 1 5.2147 0.3923 -1.2259 36 1 3.8523 0.9759 -2.2120 37 1 3.4544 -2.6515 -2.2301 38 1 3.8856 -1.2337 -3.2159 39 1 5.7017 -3.1832 -3.6196 40 1 8.0627 -4.9707 -5.1594 41 1 2.2491 -1.6318 1.1525 42 1 3.6493 -1.1204 3.3978 43 1 1.9779 -1.5509 3.8325 44 1 4.6300 1.1900 4.4838 45 1 1.6517 1.7667 7.3921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754328969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:46 Heat of formation + Delta-G solvation = -7.423078 kcal Electronic energy + Delta-G solvation = -27108.308715 eV Core-core repulsion = 23162.051983 eV Total energy + Delta-G solvation = -3946.256731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.13777 -39.81287 -38.60746 -37.00451 -34.72389 -33.78809 -32.99191 -32.14352 -31.26854 -30.77739 -28.02710 -27.10578 -26.93717 -24.83157 -22.89001 -21.82045 -21.41299 -20.66085 -20.30274 -19.17254 -18.06429 -17.85791 -17.25963 -16.30916 -16.03910 -15.51273 -15.11827 -14.91205 -14.82814 -14.61454 -14.26472 -14.08686 -13.82843 -13.61900 -13.50593 -13.43924 -13.16197 -12.87788 -12.75179 -12.20620 -12.14338 -12.02043 -11.82756 -11.52114 -11.38406 -11.25163 -10.92832 -10.75397 -10.45570 -10.23226 -10.14089 -10.08118 -9.86470 -9.48563 -9.03327 -8.49628 -8.45077 -8.00658 -7.90118 -6.43715 -3.84558 1.88035 2.64432 2.92799 3.07741 3.18731 3.24721 3.28922 3.34905 3.87784 3.92415 4.22074 4.44752 4.66873 4.70981 4.81515 4.87809 5.03930 5.10537 5.17762 5.23951 5.24938 5.38507 5.41649 5.47721 5.54998 5.55819 5.68166 5.71403 5.88194 5.93348 5.96443 6.03151 6.09191 6.25243 6.50035 6.57643 6.66013 7.20776 7.23064 7.31828 7.53196 7.55994 7.97203 8.04183 8.26347 8.59673 9.16233 9.52336 10.04133 10.73904 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014182 B = 0.002624 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.800896 B =10667.553397 C =12165.968366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 H 0.087 0.913 4 C 0.042 3.958 5 N -0.514 5.514 6 C 0.021 3.979 7 C 0.045 3.955 8 C 0.443 3.557 9 O -0.576 6.576 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.903 5.903 15 Si 0.930 3.070 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.274 1.274 19 N -0.705 5.705 20 C 0.516 3.484 21 O -0.539 6.539 22 C -0.067 4.067 23 C -0.003 4.003 24 C -0.006 4.006 25 N -0.494 5.494 26 C 0.181 3.819 27 N -0.565 5.565 28 H 0.416 0.584 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.014 0.986 37 H 0.087 0.913 38 H 0.047 0.953 39 H 0.391 0.609 40 H 0.272 0.728 41 H 0.405 0.595 42 H 0.123 0.877 43 H 0.097 0.903 44 H 0.169 0.831 45 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.522 3.894 11.718 21.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.105 0.895 4 C -0.087 4.087 5 N -0.238 5.238 6 C -0.127 4.127 7 C -0.087 4.087 8 C 0.229 3.771 9 O -0.460 6.460 10 N -0.201 5.201 11 C -0.428 4.428 12 H 0.120 0.880 13 C -0.179 4.179 14 N -0.544 5.544 15 Si 0.757 3.243 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 N -0.356 5.356 20 C 0.301 3.699 21 O -0.416 6.416 22 C -0.108 4.108 23 C -0.119 4.119 24 C -0.154 4.154 25 N -0.213 5.213 26 C -0.103 4.103 27 N -0.168 5.168 28 H 0.253 0.747 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.032 0.968 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.240 0.760 42 H 0.141 0.859 43 H 0.116 0.884 44 H 0.186 0.814 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -16.599 5.372 13.055 21.790 hybrid contribution -0.462 -1.452 -1.705 2.287 sum -17.061 3.921 11.349 20.862 Atomic orbital electron populations 1.22142 0.95268 1.02076 1.02472 1.20923 0.93101 0.97732 0.83995 0.89463 1.22497 0.89344 1.00805 0.96033 1.61574 1.03034 1.12285 1.46890 1.22564 1.03075 0.88439 0.98593 1.21881 0.96413 0.97490 0.92871 1.19717 0.87662 0.84203 0.85541 1.90493 1.69971 1.54201 1.31365 1.41865 1.10369 1.42868 1.24999 1.19639 0.84943 1.27182 1.11073 0.87963 1.25253 1.00481 0.96698 0.95482 1.69597 1.37515 1.32909 1.14363 0.85930 0.82010 0.78421 0.77937 1.19867 1.21005 1.19913 1.45767 1.66664 1.14384 1.08772 1.20391 0.77678 0.87359 0.84488 1.90721 1.49995 1.15791 1.85130 1.20052 1.05311 0.96203 0.89272 1.20474 0.91855 1.04629 0.94902 1.22087 1.00301 0.96355 0.96637 1.70275 1.12247 1.25774 1.13008 1.24895 0.94115 0.92722 0.98525 1.43173 1.17616 1.32952 1.23079 0.74675 0.91692 0.92377 0.92107 0.90301 0.93598 0.92074 0.88548 0.96780 0.89483 0.93502 0.77543 0.91829 0.75976 0.85936 0.88429 0.81389 0.77769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.48 37.16 0.35 -1.07 16 2 C 0.15 1.60 2.35 -67.93 -0.16 1.44 16 3 H 0.09 1.16 6.23 -51.93 -0.32 0.83 16 4 C 0.04 0.46 4.52 -3.83 -0.02 0.45 16 5 N -0.51 -7.68 4.22 -244.38 -1.03 -8.72 16 6 C 0.02 0.34 8.96 60.07 0.54 0.88 16 7 C 0.04 0.74 5.45 -4.97 -0.03 0.71 16 8 C 0.44 9.94 7.48 -10.98 -0.08 9.85 16 9 O -0.58 -14.80 13.91 5.54 0.08 -14.72 16 10 N -0.56 -13.81 5.29 -10.96 -0.06 -13.86 16 11 C -0.30 -8.12 9.68 -14.93 -0.14 -8.27 16 12 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.11 13.05 55.50 0.72 -23.38 16 15 Si 0.93 20.76 29.55 -169.99 -5.02 15.73 16 16 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 19 N -0.70 -7.49 4.80 -53.80 -0.26 -7.74 16 20 C 0.52 6.17 7.79 -10.99 -0.09 6.08 16 21 O -0.54 -8.59 15.70 5.55 0.09 -8.50 16 22 C -0.07 -0.61 6.26 -29.03 -0.18 -0.79 16 23 C 0.00 -0.03 5.73 -81.60 -0.47 -0.50 16 24 C -0.01 -0.08 11.79 -17.81 -0.21 -0.29 16 25 N -0.49 -6.80 11.25 -14.66 -0.16 -6.96 16 26 C 0.18 1.78 13.04 -90.37 -1.18 0.60 16 27 N -0.56 -4.93 6.15 -10.30 -0.06 -4.99 16 28 H 0.42 2.17 8.96 -40.82 -0.37 1.80 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.75 7.93 -51.93 -0.41 0.34 16 33 H 0.05 0.48 8.12 -51.93 -0.42 0.06 16 34 H 0.06 0.95 6.58 -51.93 -0.34 0.61 16 35 H 0.10 1.90 5.82 -51.93 -0.30 1.60 16 36 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.09 1.25 7.93 -51.93 -0.41 0.84 16 38 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 39 H 0.39 9.17 7.90 -40.82 -0.32 8.85 16 40 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.41 3.80 8.60 -40.82 -0.35 3.45 16 42 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.17 2.17 8.06 -52.49 -0.42 1.75 16 45 H 0.21 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 379.90 15.07 5.73 5.73 Total: -1.00 -35.56 379.90 -8.31 -43.87 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -6.57 Total: 13.96 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: -1.76 Total: 9.59 kcal Atomic # 7 Polarization: -64.81 SS G_CDS: -0.85 Total: -65.66 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: 0.16 Total: -23.22 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.56 -8.31 -43.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754328969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.451 kcal (2) G-P(sol) polarization free energy of solvation -35.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds