Wall clock time and date at job start Tue Mar 31 2020 04:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46856 * 2 1 4 4 C 1.52996 * 109.47072 * 240.00268 * 2 1 3 5 5 N 1.46893 * 109.47665 * 184.99792 * 4 2 1 6 6 C 1.46901 * 111.00162 * 293.95679 * 5 4 2 7 7 C 1.46899 * 111.00387 * 169.99939 * 5 4 2 8 8 C 1.50707 * 109.47116 * 190.00214 * 7 5 4 9 9 O 1.21296 * 119.99641 * 359.97438 * 8 7 5 10 10 N 1.34773 * 120.00095 * 180.02562 * 8 7 5 11 11 C 1.37096 * 119.99956 * 179.97438 * 10 8 7 12 12 H 1.07992 * 120.00088 * 359.97438 * 11 10 8 13 13 C 1.38951 * 119.99721 * 179.97438 * 11 10 8 14 14 N 1.31407 * 120.00416 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99796 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47428 * 60.00045 * 15 13 11 17 17 H 1.48506 * 109.47236 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47383 * 299.99984 * 15 13 11 19 19 N 1.46501 * 109.47387 * 120.00178 * 2 1 3 20 20 C 1.34769 * 119.99854 * 275.00122 * 19 2 1 21 21 O 1.21285 * 120.00559 * 359.97438 * 20 19 2 22 22 C 1.50699 * 120.00037 * 180.02562 * 20 19 2 23 23 C 1.50704 * 109.47511 * 179.97438 * 22 20 19 24 24 C 1.34664 * 126.58651 * 275.03761 * 23 22 20 25 25 N 1.34134 * 108.01786 * 179.74146 * 24 23 22 26 26 C 1.30496 * 109.25675 * 0.37372 * 25 24 23 27 27 N 1.35047 * 108.70161 * 359.62603 * 26 25 24 28 28 H 0.96997 * 126.40535 * 180.25138 * 27 26 25 29 29 H 1.08995 * 109.47163 * 59.99406 * 1 2 3 30 30 H 1.08996 * 109.46886 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46873 * 299.99806 * 1 2 3 32 32 H 1.09007 * 109.46894 * 305.00231 * 4 2 1 33 33 H 1.09001 * 109.47075 * 64.99601 * 4 2 1 34 34 H 1.09001 * 109.47495 * 59.99123 * 6 5 4 35 35 H 1.08996 * 109.47313 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.46983 * 299.99899 * 6 5 4 37 37 H 1.08993 * 109.46958 * 309.99857 * 7 5 4 38 38 H 1.08996 * 109.47162 * 70.00380 * 7 5 4 39 39 H 0.96998 * 119.99840 * 359.97438 * 10 8 7 40 40 H 0.96999 * 120.00533 * 179.97438 * 14 13 11 41 41 H 0.96999 * 119.99913 * 94.99699 * 19 2 1 42 42 H 1.08992 * 109.47512 * 59.99585 * 22 20 19 43 43 H 1.09004 * 109.47075 * 299.99537 * 22 20 19 44 44 H 1.07998 * 125.99171 * 359.92955 * 24 23 22 45 45 H 1.08002 * 125.65353 * 179.89694 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5040 -0.8266 -1.1906 6 6 4.1310 0.4993 -1.2721 7 6 4.0106 -1.7143 -2.2457 8 6 5.4724 -1.9937 -2.0081 9 8 6.0366 -1.5013 -1.0539 10 7 6.1529 -2.7898 -2.8564 11 6 7.4828 -3.0435 -2.6405 12 1 7.9852 -2.6051 -1.7910 13 6 8.1842 -3.8647 -3.5148 14 7 7.5730 -4.3977 -4.5488 15 14 9.9960 -4.2109 -3.2203 16 1 10.1664 -4.8658 -1.8984 17 1 10.5084 -5.1078 -4.2873 18 1 10.7539 -2.9340 -3.2415 19 7 2.0184 -0.6906 1.1961 20 6 2.1471 -0.0183 2.3570 21 8 1.8591 1.1586 2.4115 22 6 2.6501 -0.7286 3.5873 23 6 2.7013 0.2398 4.7409 24 6 3.7076 1.0848 5.0355 25 7 3.3616 1.7759 6.1318 26 6 2.1826 1.3855 6.5323 27 7 1.7335 0.4301 5.6901 28 1 0.8839 -0.0343 5.7469 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6053 -1.7198 -1.2952 33 1 1.7516 -0.1582 -2.1369 34 1 3.7911 1.1139 -0.4385 35 1 5.2147 0.3923 -1.2259 36 1 3.8523 0.9759 -2.2120 37 1 3.4544 -2.6515 -2.2301 38 1 3.8856 -1.2337 -3.2159 39 1 5.7017 -3.1832 -3.6196 40 1 8.0627 -4.9707 -5.1594 41 1 2.2491 -1.6318 1.1525 42 1 3.6493 -1.1204 3.3978 43 1 1.9779 -1.5509 3.8325 44 1 4.6300 1.1900 4.4838 45 1 1.6517 1.7667 7.3921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754328969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:45 Heat of formation + Delta-G solvation = -35.468598 kcal Electronic energy + Delta-G solvation = -27109.524860 eV Core-core repulsion = 23162.051983 eV Total energy + Delta-G solvation = -3947.472876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.95943 -40.81633 -40.19499 -38.28005 -36.08299 -35.46745 -33.85632 -33.23604 -32.98200 -31.64364 -29.46546 -27.99392 -27.92880 -26.62119 -24.07379 -22.72168 -22.31480 -21.54061 -21.22006 -20.91829 -19.81318 -18.85832 -18.20151 -17.71925 -17.09724 -16.66499 -16.52580 -16.17098 -16.13544 -15.74089 -15.58717 -15.19569 -15.04476 -15.00438 -14.67501 -14.39468 -14.15684 -13.91718 -13.62854 -13.59586 -13.37956 -13.09772 -12.96147 -12.86304 -12.74086 -12.63066 -12.43010 -12.37022 -12.11727 -11.70052 -11.41870 -11.03484 -10.96361 -10.81617 -10.23575 -9.95813 -9.93482 -9.33334 -9.19512 -8.43500 -5.91194 1.06141 1.41009 1.43097 1.53153 1.73259 2.11483 2.14443 2.26957 2.30145 2.51148 2.79099 3.24044 3.46573 3.68511 3.80730 3.96961 4.09017 4.15602 4.21077 4.24916 4.37196 4.44918 4.56180 4.56624 4.57076 4.61076 4.65147 4.69072 4.73029 4.81049 4.83411 5.06532 5.19286 5.25591 5.30183 5.44236 5.63392 5.76623 5.89933 6.07784 6.20883 6.59309 6.65310 6.70456 7.14212 7.17600 7.38273 7.62291 8.18671 8.73605 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014182 B = 0.002624 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.800896 B =10667.553397 C =12165.968366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.148 3.852 3 H 0.058 0.942 4 C 0.047 3.953 5 N -0.525 5.525 6 C 0.032 3.968 7 C 0.058 3.942 8 C 0.442 3.558 9 O -0.613 6.613 10 N -0.576 5.576 11 C -0.329 4.329 12 H 0.078 0.922 13 C -0.013 4.013 14 N -0.921 5.921 15 Si 0.988 3.012 16 H -0.271 1.271 17 H -0.272 1.272 18 H -0.275 1.275 19 N -0.698 5.698 20 C 0.513 3.487 21 O -0.584 6.584 22 C -0.061 4.061 23 C 0.000 4.000 24 C -0.047 4.047 25 N -0.542 5.542 26 C 0.190 3.810 27 N -0.552 5.552 28 H 0.435 0.565 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.044 0.956 32 H 0.106 0.894 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.028 0.972 37 H 0.119 0.881 38 H 0.065 0.935 39 H 0.396 0.604 40 H 0.276 0.724 41 H 0.414 0.586 42 H 0.126 0.874 43 H 0.137 0.863 44 H 0.155 0.845 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.808 2.414 11.580 23.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.043 3.957 3 H 0.076 0.924 4 C -0.081 4.081 5 N -0.249 5.249 6 C -0.117 4.117 7 C -0.073 4.073 8 C 0.230 3.770 9 O -0.499 6.499 10 N -0.214 5.214 11 C -0.459 4.459 12 H 0.096 0.904 13 C -0.212 4.212 14 N -0.562 5.562 15 Si 0.812 3.188 16 H -0.197 1.197 17 H -0.196 1.196 18 H -0.200 1.200 19 N -0.348 5.348 20 C 0.300 3.700 21 O -0.465 6.465 22 C -0.102 4.102 23 C -0.117 4.117 24 C -0.195 4.195 25 N -0.262 5.262 26 C -0.094 4.094 27 N -0.157 5.157 28 H 0.276 0.724 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.124 0.876 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.137 0.863 38 H 0.083 0.917 39 H 0.229 0.771 40 H 0.086 0.914 41 H 0.250 0.750 42 H 0.144 0.856 43 H 0.155 0.845 44 H 0.172 0.828 45 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -18.928 3.849 12.892 23.222 hybrid contribution 0.181 -0.928 -1.617 1.873 sum -18.747 2.921 11.275 22.070 Atomic orbital electron populations 1.22042 0.93237 1.03295 1.02329 1.20913 0.94551 0.96223 0.84047 0.92351 1.22586 0.86334 1.02655 0.96504 1.61496 1.05506 1.11279 1.46645 1.22327 1.00500 0.89493 0.99349 1.21765 0.92098 0.99460 0.94003 1.20830 0.90003 0.82159 0.84055 1.90483 1.71609 1.55011 1.32788 1.41932 1.09801 1.43889 1.25783 1.19574 0.86634 1.28481 1.11169 0.90448 1.25958 1.04119 0.96093 0.95059 1.69653 1.38814 1.33060 1.14681 0.85059 0.77385 0.78228 0.78109 1.19663 1.19630 1.20030 1.45765 1.65945 1.14695 1.08441 1.20822 0.76902 0.86862 0.85424 1.90705 1.52149 1.17759 1.85874 1.20098 1.06340 0.96438 0.87289 1.20625 0.91585 1.04086 0.95408 1.22142 1.01254 0.98306 0.97753 1.70199 1.14604 1.27439 1.13926 1.25682 0.93087 0.91760 0.98895 1.43129 1.17901 1.32568 1.22066 0.72432 0.90455 0.90383 0.93674 0.87587 0.92090 0.92152 0.92731 0.95344 0.86323 0.91722 0.77051 0.91418 0.74960 0.85607 0.84473 0.82772 0.73727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.48 71.98 0.68 -1.57 16 2 C 0.15 2.93 2.35 44.99 0.11 3.04 16 3 H 0.06 1.53 6.23 -2.38 -0.01 1.51 16 4 C 0.05 0.88 4.52 86.30 0.39 1.27 16 5 N -0.53 -14.76 4.22 -927.07 -3.92 -18.67 16 6 C 0.03 1.01 8.96 127.69 1.14 2.16 16 7 C 0.06 1.77 5.45 85.56 0.47 2.23 16 8 C 0.44 19.81 7.48 87.66 0.66 20.46 16 9 O -0.61 -32.31 13.91 -3.08 -0.04 -32.35 16 10 N -0.58 -28.39 5.29 -306.98 -1.62 -30.01 16 11 C -0.33 -18.24 9.68 84.04 0.81 -17.42 16 12 H 0.08 4.60 7.16 -2.91 -0.02 4.57 16 13 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 14 N -0.92 -48.78 13.05 21.66 0.28 -48.50 16 15 Si 0.99 42.50 29.55 68.60 2.03 44.53 16 16 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 17 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 N -0.70 -13.67 4.80 -442.53 -2.12 -15.80 16 20 C 0.51 11.93 7.79 87.66 0.68 12.61 16 21 O -0.58 -18.84 15.70 -3.04 -0.05 -18.89 16 22 C -0.06 -1.03 6.26 29.10 0.18 -0.85 16 23 C 0.00 0.00 5.73 40.95 0.23 0.23 16 24 C -0.05 -1.34 11.79 83.52 0.98 -0.36 16 25 N -0.54 -15.25 11.25 -200.31 -2.25 -17.51 16 26 C 0.19 3.51 13.04 180.26 2.35 5.86 16 27 N -0.55 -8.75 6.15 -186.49 -1.15 -9.89 16 28 H 0.43 3.39 8.96 -92.71 -0.83 2.56 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 1.49 7.93 -2.38 -0.02 1.47 16 33 H 0.06 1.03 8.12 -2.39 -0.02 1.01 16 34 H 0.06 1.92 6.58 -2.39 -0.02 1.90 16 35 H 0.05 2.23 5.82 -2.39 -0.01 2.21 16 36 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.12 2.95 7.93 -2.39 -0.02 2.94 16 38 H 0.06 1.81 8.12 -2.39 -0.02 1.79 16 39 H 0.40 18.46 7.90 -92.71 -0.73 17.73 16 40 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 41 H 0.41 6.72 8.60 -92.71 -0.80 5.92 16 42 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.14 1.21 8.14 -2.38 -0.02 1.19 16 44 H 0.15 4.48 8.06 -2.91 -0.02 4.46 16 45 H 0.25 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -81.06 379.90 -1.00 -82.06 By element: Atomic # 1 Polarization: 38.89 SS G_CDS: -1.32 Total: 37.57 kcal Atomic # 6 Polarization: 18.30 SS G_CDS: 9.16 Total: 27.46 kcal Atomic # 7 Polarization: -129.60 SS G_CDS: -10.78 Total: -140.38 kcal Atomic # 8 Polarization: -51.15 SS G_CDS: -0.09 Total: -51.24 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -81.06 -1.00 -82.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754328969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.595 kcal (2) G-P(sol) polarization free energy of solvation -81.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds