Wall clock time and date at job start Tue Mar 31 2020 04:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34772 * 120.00347 * 2 1 4 4 O 1.21285 * 119.99848 * 4.83000 * 3 2 1 5 5 C 1.50697 * 120.00243 * 184.83550 * 3 2 1 6 6 C 1.52999 * 110.43258 * 296.39088 * 5 3 2 7 7 C 1.54623 * 110.48867 * 173.84738 * 5 3 2 8 8 C 1.54479 * 101.76676 * 266.11900 * 7 5 3 9 9 N 1.46767 * 105.47443 * 334.58396 * 8 7 5 10 10 C 1.34743 * 111.34654 * 16.97962 * 9 8 7 11 11 O 1.21287 * 125.12238 * 179.68394 * 10 9 8 12 12 C 1.46499 * 119.99679 * 179.97438 * 2 1 3 13 13 H 1.08999 * 110.21295 * 178.50167 * 12 2 1 14 14 C 1.50123 * 110.37227 * 300.51550 * 12 2 1 15 15 C 1.54849 * 110.81645 * 216.72153 * 14 12 2 16 16 C 1.54411 * 110.06702 * 321.07084 * 15 14 12 17 17 N 1.43431 * 116.38952 * 318.65102 * 16 15 14 18 18 C 1.36939 * 120.53704 * 271.73197 * 17 16 15 19 19 H 1.08004 * 120.00085 * 146.09368 * 18 17 16 20 20 C 1.38814 * 120.00044 * 326.08851 * 18 17 16 21 21 N 1.31620 * 119.99790 * 327.16543 * 20 18 17 22 22 Si 1.86799 * 119.99975 * 147.16504 * 20 18 17 23 23 H 1.48497 * 109.46996 * 270.00150 * 22 20 18 24 24 H 1.48502 * 109.46936 * 29.99816 * 22 20 18 25 25 H 1.48498 * 109.47141 * 150.00215 * 22 20 18 26 26 C 1.50169 * 118.92659 * 91.45445 * 17 16 15 27 27 C 1.46233 * 107.53758 * 289.84420 * 26 17 16 28 28 H 1.08993 * 109.46943 * 275.08015 * 1 2 3 29 29 H 1.08996 * 109.46600 * 35.07865 * 1 2 3 30 30 H 1.08997 * 109.47207 * 155.07770 * 1 2 3 31 31 H 1.08996 * 109.47412 * 51.67807 * 6 5 3 32 32 H 1.09000 * 109.47039 * 171.67646 * 6 5 3 33 33 H 1.09000 * 109.47207 * 291.67008 * 6 5 3 34 34 H 1.09005 * 110.96932 * 24.23540 * 7 5 3 35 35 H 1.09001 * 110.97520 * 147.96416 * 7 5 3 36 36 H 1.09002 * 110.24503 * 93.58481 * 8 7 5 37 37 H 1.08997 * 110.24701 * 215.49482 * 8 7 5 38 38 H 0.96992 * 124.34972 * 197.01550 * 9 8 7 39 39 H 1.09003 * 109.20949 * 337.06281 * 14 12 2 40 40 H 1.09001 * 109.21507 * 96.41852 * 14 12 2 41 41 H 1.09000 * 109.35876 * 81.33662 * 15 14 12 42 42 H 1.09002 * 109.35585 * 200.92889 * 15 14 12 43 43 H 1.09002 * 107.88477 * 196.93705 * 16 15 14 44 44 H 1.08994 * 108.09806 * 80.53929 * 16 15 14 45 45 H 0.97003 * 119.99877 * 351.68044 * 21 20 18 46 46 H 1.09001 * 109.84149 * 49.34791 * 26 17 16 47 47 H 1.09001 * 109.84840 * 170.26203 * 26 17 16 48 48 H 1.08999 * 108.52531 * 179.64672 * 27 26 17 49 49 H 1.09007 * 108.52041 * 297.16635 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5358 2.2156 0.0884 5 6 3.6419 1.1694 -0.1100 6 6 4.2674 0.4794 1.1039 7 6 4.1726 2.6156 -0.2435 8 6 4.2668 2.7763 -1.7770 9 7 4.4292 1.4161 -2.3040 10 6 4.0803 0.4907 -1.3890 11 8 4.1126 -0.7093 -1.5627 12 6 2.1975 -1.2688 0.0006 13 1 3.2713 -1.0837 -0.0263 14 6 1.8399 -2.0781 1.2133 15 6 3.0758 -2.8414 1.7496 16 6 3.9225 -3.3723 0.5725 17 7 3.1983 -3.9280 -0.5339 18 6 2.8559 -5.2538 -0.5459 19 1 1.9300 -5.5683 -1.0045 20 6 3.6989 -6.1937 0.0312 21 7 5.0024 -6.0132 0.0039 22 14 2.9834 -7.7144 0.8465 23 1 2.7243 -7.4314 2.2810 24 1 1.7100 -8.0823 0.1767 25 1 3.9469 -8.8383 0.7298 26 6 2.8163 -3.0310 -1.6760 27 6 1.7786 -2.1207 -1.1933 28 1 -0.3633 0.0910 1.0236 29 1 -0.3632 0.8410 -0.5906 30 1 -0.3633 -0.9319 -0.4330 31 1 3.8075 -0.4990 1.2426 32 1 5.3382 0.3577 0.9409 33 1 4.1022 1.0880 1.9929 34 1 3.4677 3.3305 0.1810 35 1 5.1538 2.7156 0.2207 36 1 3.3528 3.2249 -2.1661 37 1 5.1288 3.3894 -2.0398 38 1 4.7475 1.2095 -3.1966 39 1 1.4643 -1.4126 1.9907 40 1 1.0628 -2.7955 0.9495 41 1 3.6808 -2.1681 2.3570 42 1 2.7448 -3.6793 2.3632 43 1 4.5913 -4.1404 0.9609 44 1 4.5359 -2.5522 0.1996 45 1 5.3811 -5.2906 -0.5209 46 1 3.6850 -2.4606 -2.0051 47 1 2.4310 -3.6280 -2.5027 48 1 1.4934 -1.4568 -2.0094 49 1 0.9062 -2.7094 -0.9095 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948767452.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:36 Heat of formation + Delta-G solvation = -11.259518 kcal Electronic energy + Delta-G solvation = -31222.281972 eV Core-core repulsion = 27379.399224 eV Total energy + Delta-G solvation = -3842.882748 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.68273 -39.06020 -38.24306 -36.33899 -35.26727 -33.39518 -32.65284 -31.72951 -29.87448 -29.06025 -27.16015 -25.93923 -25.53695 -24.13414 -22.98181 -22.33120 -21.41051 -20.12402 -19.27845 -18.44099 -17.57494 -17.46980 -16.91164 -16.01025 -15.70001 -15.18337 -14.85885 -14.64883 -14.27219 -14.03756 -13.71207 -13.67134 -13.62651 -13.42213 -13.15457 -12.86124 -12.67571 -12.48582 -12.34780 -12.23627 -12.11274 -11.84792 -11.55289 -11.47258 -11.20467 -10.92785 -10.61492 -10.41888 -10.31296 -10.28116 -9.99383 -9.92496 -9.80311 -9.54101 -9.30964 -9.21375 -9.08056 -8.44766 -8.19557 -6.69222 -5.88767 -3.18127 2.27282 2.62645 3.08223 3.22818 3.56791 3.57255 3.74480 4.04740 4.19322 4.38901 4.67007 4.67884 4.83192 5.10757 5.18339 5.25599 5.29150 5.39480 5.46544 5.53140 5.55347 5.58164 5.65068 5.67865 5.79103 5.81220 5.84679 5.94514 6.08330 6.15776 6.21287 6.34546 6.48338 6.48811 6.59667 6.64440 6.74199 6.84111 6.87555 6.96023 6.99574 7.16874 7.29849 7.46118 7.54434 8.12405 8.20047 8.30250 8.71577 9.27616 9.97129 10.48473 11.23621 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.020264 B = 0.004566 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.449678 B = 6130.288525 C = 6578.452709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.595 5.595 3 C 0.534 3.466 4 O -0.545 6.545 5 C -0.118 4.118 6 C -0.154 4.154 7 C -0.118 4.118 8 C 0.101 3.899 9 N -0.731 5.731 10 C 0.519 3.481 11 O -0.479 6.479 12 C 0.101 3.899 13 H 0.153 0.847 14 C -0.119 4.119 15 C -0.139 4.139 16 C 0.143 3.857 17 N -0.583 5.583 18 C -0.348 4.348 19 H 0.046 0.954 20 C -0.017 4.017 21 N -0.896 5.896 22 Si 1.051 2.949 23 H -0.294 1.294 24 H -0.293 1.293 25 H -0.292 1.292 26 C 0.132 3.868 27 C -0.117 4.117 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.413 0.587 39 H 0.043 0.957 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.025 0.975 45 H 0.270 0.730 46 H 0.064 0.936 47 H 0.049 0.951 48 H 0.036 0.964 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.740 18.655 -0.859 18.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.325 5.325 3 C 0.321 3.679 4 O -0.424 6.424 5 C -0.125 4.125 6 C -0.212 4.212 7 C -0.156 4.156 8 C -0.023 4.023 9 N -0.388 5.388 10 C 0.303 3.697 11 O -0.352 6.352 12 C 0.001 3.999 13 H 0.170 0.830 14 C -0.157 4.157 15 C -0.180 4.180 16 C 0.014 3.986 17 N -0.305 5.305 18 C -0.477 4.477 19 H 0.064 0.936 20 C -0.221 4.221 21 N -0.535 5.535 22 Si 0.882 3.118 23 H -0.221 1.221 24 H -0.219 1.219 25 H -0.218 1.218 26 C 0.008 3.992 27 C -0.157 4.157 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.126 0.874 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.252 0.748 39 H 0.062 0.938 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.044 0.956 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.055 0.945 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.743 17.189 0.052 17.277 hybrid contribution -0.630 1.239 -1.248 1.868 sum -2.373 18.428 -1.196 18.618 Atomic orbital electron populations 1.21589 0.79714 1.02709 1.01683 1.48142 1.06906 1.06538 1.70949 1.19702 0.88087 0.83620 0.76533 1.90641 1.69438 1.31250 1.51034 1.21561 0.94614 0.98906 0.97371 1.22211 1.01799 1.02485 0.94669 1.22700 1.02936 0.94449 0.95492 1.22081 1.02295 0.83731 0.94240 1.46179 1.68422 1.07281 1.16917 1.20616 0.76916 0.86737 0.85394 1.90825 1.52090 1.12337 1.79992 1.21822 1.00385 0.81413 0.96320 0.83030 1.21841 0.99827 0.97912 0.96126 1.22751 0.96691 0.98390 1.00166 1.20301 0.93460 0.96923 0.87871 1.43888 1.67401 1.05318 1.13896 1.19823 1.02818 0.83124 1.41969 0.93601 1.25684 0.94271 1.00618 1.01506 1.70693 1.11037 1.31311 1.40443 0.83742 0.74894 0.76393 0.76814 1.22123 1.21917 1.21841 1.20559 0.96338 0.91627 0.90667 1.21086 1.00844 0.97427 0.96332 0.92803 0.91462 0.90711 0.88701 0.90764 0.90914 0.87407 0.89167 0.90894 0.89967 0.74832 0.93849 0.91535 0.93583 0.92422 0.91705 0.95627 0.91979 0.91824 0.93249 0.94515 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.18 9.67 59.85 0.58 1.76 16 2 N -0.59 -9.27 2.63 -175.87 -0.46 -9.73 16 3 C 0.53 8.11 6.52 -10.99 -0.07 8.04 16 4 O -0.55 -9.00 15.17 5.55 0.08 -8.92 16 5 C -0.12 -1.51 0.56 -155.68 -0.09 -1.60 16 6 C -0.15 -1.94 8.06 37.16 0.30 -1.64 16 7 C -0.12 -1.11 6.07 -25.10 -0.15 -1.26 16 8 C 0.10 0.83 7.78 -3.12 -0.02 0.80 16 9 N -0.73 -7.63 6.25 -59.12 -0.37 -8.00 16 10 C 0.52 7.26 6.82 -10.71 -0.07 7.19 16 11 O -0.48 -8.34 9.98 5.55 0.06 -8.28 16 12 C 0.10 1.75 0.57 -69.60 -0.04 1.71 16 13 H 0.15 2.67 0.35 -52.02 -0.02 2.65 16 14 C -0.12 -2.14 4.57 -27.19 -0.12 -2.26 16 15 C -0.14 -2.75 5.81 -25.02 -0.15 -2.89 16 16 C 0.14 3.34 4.58 -4.93 -0.02 3.32 16 17 N -0.58 -14.56 2.38 -175.40 -0.42 -14.98 16 18 C -0.35 -9.73 9.37 -15.06 -0.14 -9.87 16 19 H 0.05 1.32 8.01 -52.48 -0.42 0.90 16 20 C -0.02 -0.48 4.70 -17.43 -0.08 -0.56 16 21 N -0.90 -26.79 12.14 55.49 0.67 -26.12 16 22 Si 1.05 25.46 30.03 -169.99 -5.10 20.36 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 C 0.13 2.92 5.91 -5.21 -0.03 2.88 16 27 C -0.12 -2.23 3.25 -30.19 -0.10 -2.32 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.90 7.65 -51.93 -0.40 0.50 16 30 H 0.07 0.99 6.98 -51.93 -0.36 0.63 16 31 H 0.09 1.42 2.87 -51.93 -0.15 1.27 16 32 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.11 1.06 6.89 -51.93 -0.36 0.70 16 35 H 0.09 0.66 7.91 -51.93 -0.41 0.25 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.41 3.64 8.96 -40.82 -0.37 3.27 16 39 H 0.04 0.71 7.91 -51.93 -0.41 0.30 16 40 H 0.07 1.30 6.83 -51.93 -0.35 0.95 16 41 H 0.05 0.79 7.20 -51.93 -0.37 0.42 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.07 1.74 5.42 -51.93 -0.28 1.46 16 44 H 0.03 0.58 6.44 -51.93 -0.33 0.24 16 45 H 0.27 8.22 7.77 -40.82 -0.32 7.91 16 46 H 0.06 1.43 4.99 -51.93 -0.26 1.17 16 47 H 0.05 1.12 7.99 -51.93 -0.42 0.71 16 48 H 0.04 0.67 8.02 -51.93 -0.42 0.25 16 49 H 0.05 1.01 6.65 -51.93 -0.35 0.67 16 LS Contribution 351.82 15.07 5.30 5.30 Total: -1.00 -32.69 351.82 -7.77 -40.47 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -7.32 Total: 6.61 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -0.21 Total: 3.29 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.58 Total: -58.83 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: 0.14 Total: -17.20 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.10 Total: 20.36 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.69 -7.77 -40.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948767452.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.208 kcal (2) G-P(sol) polarization free energy of solvation -32.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds