Wall clock time and date at job start Tue Mar 31 2020 04:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47079 * 2 1 4 4 H 1.08997 * 109.47353 * 55.74710 * 3 2 1 5 5 C 1.50703 * 109.46693 * 175.74547 * 3 2 1 6 6 O 1.21280 * 120.00074 * 97.92352 * 5 3 2 7 7 N 1.34776 * 120.00185 * 277.91689 * 5 3 2 8 8 C 1.47425 * 125.65198 * 184.61969 * 7 5 3 9 9 C 1.55122 * 104.72344 * 155.81727 * 8 7 5 10 10 C 1.55160 * 101.48781 * 37.29929 * 9 8 7 11 11 H 1.09001 * 110.87490 * 82.76284 * 10 9 8 12 12 N 1.46500 * 110.72247 * 205.96982 * 10 9 8 13 13 C 1.46500 * 119.99910 * 53.51484 * 12 10 9 14 14 C 1.36936 * 120.00013 * 233.52137 * 12 10 9 15 15 H 1.07995 * 119.99721 * 23.03959 * 14 12 10 16 16 C 1.38810 * 119.99739 * 203.04073 * 14 12 10 17 17 N 1.31620 * 120.00145 * 12.69049 * 16 14 12 18 18 Si 1.86800 * 119.99810 * 192.68372 * 16 14 12 19 19 H 1.48504 * 109.47162 * 60.00325 * 18 16 14 20 20 H 1.48500 * 109.47455 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47349 * 299.99930 * 18 16 14 22 22 C 1.47021 * 125.64520 * 4.93029 * 7 5 3 23 23 N 1.46496 * 109.47050 * 295.74279 * 3 2 1 24 24 C 1.46821 * 124.33454 * 119.98582 * 23 3 2 25 25 C 1.54479 * 105.44681 * 196.99885 * 24 23 3 26 26 C 1.54631 * 101.79643 * 334.63206 * 25 24 23 27 27 C 1.34421 * 124.35122 * 300.02750 * 23 3 2 28 28 O 1.21286 * 124.93864 * 359.54860 * 27 23 3 29 29 H 1.08992 * 109.47006 * 60.00166 * 1 2 3 30 30 H 1.09002 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46689 * 300.00222 * 1 2 3 32 32 H 1.08996 * 109.47151 * 239.99613 * 2 1 3 33 33 H 1.09006 * 109.47042 * 120.00053 * 2 1 3 34 34 H 1.08995 * 110.36596 * 274.75165 * 8 7 5 35 35 H 1.08999 * 110.36337 * 37.06896 * 8 7 5 36 36 H 1.09005 * 111.19478 * 279.19215 * 9 8 7 37 37 H 1.09002 * 110.94224 * 155.28963 * 9 8 7 38 38 H 1.09007 * 109.47008 * 88.00666 * 13 12 10 39 39 H 1.09000 * 109.47428 * 208.00301 * 13 12 10 40 40 H 1.09000 * 109.47775 * 328.01075 * 13 12 10 41 41 H 0.96999 * 119.99678 * 179.97438 * 17 16 14 42 42 H 1.09008 * 109.88201 * 300.43349 * 22 7 5 43 43 H 1.08993 * 109.88599 * 61.60514 * 22 7 5 44 44 H 1.09001 * 110.23896 * 78.02062 * 24 23 3 45 45 H 1.08998 * 110.28523 * 316.00604 * 24 23 3 46 46 H 1.08998 * 110.97524 * 216.49005 * 25 24 23 47 47 H 1.09008 * 110.96500 * 92.76657 * 25 24 23 48 48 H 1.09002 * 110.48429 * 143.46041 * 26 25 24 49 49 H 1.08993 * 110.48284 * 265.96239 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6158 1.9779 0.8494 5 6 3.5434 1.4437 0.1054 6 8 4.2212 1.5632 -0.8932 7 7 4.1346 1.3121 1.3094 8 6 5.5837 1.3925 1.5684 9 6 5.6953 1.8018 3.0605 10 6 4.5170 1.0104 3.6871 11 1 4.8085 -0.0186 3.8973 12 7 4.0383 1.6705 4.9042 13 6 3.6576 3.0847 4.8692 14 6 3.9467 0.9656 6.0746 15 1 4.5457 0.0786 6.2190 16 6 3.0841 1.3911 7.0754 17 7 2.1788 2.3109 6.8168 18 14 3.2077 0.6580 8.7891 19 1 4.5595 0.9226 9.3443 20 1 2.1819 1.2760 9.6671 21 1 2.9798 -0.8077 8.7182 22 6 3.4418 1.0582 2.5810 23 7 1.6372 2.1028 -1.2441 24 6 0.7908 3.3008 -1.3093 25 6 0.2854 3.3686 -2.7676 26 6 1.3932 2.5976 -3.5222 27 6 1.9943 1.6894 -2.4723 28 8 2.6968 0.7285 -2.7048 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 6.0531 0.4229 1.4025 35 1 6.0413 2.1502 0.9324 36 1 5.5555 2.8756 3.1861 37 1 6.6484 1.4822 3.4819 38 1 2.6074 3.1715 4.5904 39 1 3.8098 3.5265 5.8539 40 1 4.2722 3.6085 4.1370 41 1 1.5758 2.6079 7.5161 42 1 2.7353 1.8629 2.7853 43 1 2.9167 0.1043 2.5331 44 1 1.3758 4.1892 -1.0712 45 1 -0.0503 3.2070 -0.6226 46 1 0.2248 4.4009 -3.1119 47 1 -0.6775 2.8680 -2.8703 48 1 0.9640 2.0105 -4.3341 49 1 2.1436 3.2879 -3.9074 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980441497.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:36 Heat of formation + Delta-G solvation = -33.346254 kcal Electronic energy + Delta-G solvation = -29270.422220 eV Core-core repulsion = 25426.581719 eV Total energy + Delta-G solvation = -3843.840501 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.82617 -39.34409 -37.34398 -36.28032 -34.83748 -34.73876 -31.64150 -31.10872 -30.05742 -27.85131 -27.64822 -26.99118 -26.11034 -23.58889 -22.53809 -22.08460 -22.00648 -19.91995 -19.41019 -18.43207 -17.32130 -17.06370 -16.64407 -16.20411 -15.78480 -15.34690 -15.05237 -14.72947 -14.31675 -13.96262 -13.70053 -13.48208 -13.35756 -13.23956 -13.05615 -13.04293 -12.72595 -12.66410 -12.41135 -12.20258 -11.91557 -11.76436 -11.68277 -11.41185 -11.27959 -11.22423 -11.04013 -10.92833 -10.81544 -10.61347 -10.48981 -10.34719 -9.99772 -9.87771 -9.70247 -9.47412 -8.61878 -8.60415 -8.24640 -6.88996 -5.85652 -3.31110 2.61149 2.83340 2.93615 3.32789 3.38780 3.38966 3.45520 4.25374 4.30840 4.39505 4.59964 4.65903 4.83230 4.91792 4.99963 5.14034 5.16764 5.24479 5.31566 5.35344 5.36196 5.45449 5.47804 5.50074 5.60053 5.64252 5.70014 5.77091 5.78136 5.88365 5.92873 5.99829 6.05872 6.18332 6.24595 6.33764 6.45231 6.51642 6.63107 6.75368 6.83985 7.19336 7.26570 7.57979 7.71001 7.83965 8.27873 8.30152 8.48884 9.11510 9.73466 10.22557 11.20343 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.018748 B = 0.003303 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.172321 B = 8474.542770 C = 9026.867487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.133 4.133 3 C 0.150 3.850 4 H 0.109 0.891 5 C 0.514 3.486 6 O -0.525 6.525 7 N -0.614 5.614 8 C 0.112 3.888 9 C -0.153 4.153 10 C 0.173 3.827 11 H 0.079 0.921 12 N -0.585 5.585 13 C 0.160 3.840 14 C -0.262 4.262 15 H 0.070 0.930 16 C 0.006 3.994 17 N -0.905 5.905 18 Si 0.907 3.093 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.075 3.925 23 N -0.609 5.609 24 C 0.103 3.897 25 C -0.129 4.129 26 C -0.155 4.155 27 C 0.522 3.478 28 O -0.506 6.506 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.020 0.980 39 H 0.056 0.944 40 H 0.000 1.000 41 H 0.254 0.746 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.098 0.902 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.791 2.491 -15.230 16.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C 0.043 3.957 4 H 0.127 0.873 5 C 0.300 3.700 6 O -0.401 6.401 7 N -0.349 5.349 8 C -0.011 4.011 9 C -0.193 4.193 10 C 0.063 3.937 11 H 0.097 0.903 12 N -0.305 5.305 13 C 0.015 3.985 14 C -0.391 4.391 15 H 0.088 0.912 16 C -0.193 4.193 17 N -0.550 5.550 18 Si 0.736 3.264 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.208 1.208 22 C -0.050 4.050 23 N -0.345 5.345 24 C -0.020 4.020 25 C -0.167 4.167 26 C -0.195 4.195 27 C 0.309 3.691 28 O -0.380 6.380 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.018 0.982 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.107 0.893 47 H 0.100 0.900 48 H 0.116 0.884 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.211 2.109 -15.751 16.440 hybrid contribution -0.137 -0.209 1.152 1.179 sum -4.349 1.899 -14.599 15.351 Atomic orbital electron populations 1.21693 0.94597 1.01983 1.01831 1.21824 0.96992 0.94135 1.04230 1.20798 0.91944 0.95774 0.87162 0.87324 1.20479 0.90209 0.77158 0.82161 1.90728 1.65267 1.49142 1.34939 1.48548 1.08459 1.70795 1.07084 1.22194 0.81205 1.00844 0.96834 1.23372 1.00755 1.02187 0.92957 1.21349 0.90424 0.96227 0.85714 0.90257 1.43903 1.75875 1.06708 1.04057 1.20798 0.95869 0.83082 0.98725 1.19200 1.18502 1.09608 0.91811 0.91240 1.25023 0.95777 0.99145 0.99319 1.70052 1.19777 1.32817 1.32318 0.86310 0.77289 0.78680 0.84080 1.20982 1.21605 1.20846 1.23061 0.98117 1.00711 0.83117 1.47998 1.51904 1.29225 1.05382 1.22116 0.94305 0.87652 0.97974 1.22567 0.98487 1.01794 0.93875 1.22318 0.99419 0.99536 0.98254 1.20683 0.79646 0.84886 0.83854 1.90717 1.36016 1.28175 1.83060 0.92812 0.92312 0.92314 0.89929 0.90131 0.91942 0.91385 0.90435 0.90436 0.96181 0.92521 0.98194 0.93552 0.90958 0.92037 0.91173 0.90146 0.89263 0.90003 0.88394 0.88061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.79 37.16 0.36 -1.20 16 2 C -0.13 -1.79 5.32 -26.73 -0.14 -1.94 16 3 C 0.15 2.13 2.09 -69.08 -0.14 1.99 16 4 H 0.11 1.42 7.33 -51.93 -0.38 1.04 16 5 C 0.51 9.01 7.00 -10.98 -0.08 8.93 16 6 O -0.53 -11.00 14.33 -16.22 -0.23 -11.23 16 7 N -0.61 -10.29 3.32 -170.38 -0.57 -10.86 16 8 C 0.11 1.78 6.90 -2.41 -0.02 1.76 16 9 C -0.15 -2.49 6.62 -24.47 -0.16 -2.65 16 10 C 0.17 3.26 3.44 -66.09 -0.23 3.03 16 11 H 0.08 1.49 7.93 -51.93 -0.41 1.08 16 12 N -0.58 -13.45 2.93 -171.38 -0.50 -13.95 16 13 C 0.16 3.63 7.99 59.85 0.48 4.11 16 14 C -0.26 -6.71 9.61 -15.06 -0.14 -6.86 16 15 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 16 C 0.01 0.16 5.06 -17.43 -0.09 0.07 16 17 N -0.91 -24.76 10.74 55.49 0.60 -24.17 16 18 Si 0.91 20.79 29.57 -169.99 -5.03 15.76 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.08 1.29 5.86 -3.06 -0.02 1.27 16 23 N -0.61 -7.86 2.19 -166.12 -0.36 -8.23 16 24 C 0.10 0.90 7.31 -3.09 -0.02 0.87 16 25 C -0.13 -0.85 7.18 -25.10 -0.18 -1.03 16 26 C -0.15 -1.46 6.86 -26.74 -0.18 -1.64 16 27 C 0.52 7.61 6.77 -10.86 -0.07 7.53 16 28 O -0.51 -9.70 14.62 -16.22 -0.24 -9.93 16 29 H 0.05 0.56 7.73 -51.93 -0.40 0.16 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 32 H 0.08 1.30 6.67 -51.93 -0.35 0.96 16 33 H 0.08 1.09 6.68 -51.93 -0.35 0.74 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 36 H 0.08 1.33 6.00 -51.93 -0.31 1.02 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.02 0.48 7.42 -51.93 -0.39 0.10 16 39 H 0.06 1.42 6.85 -51.93 -0.36 1.07 16 40 H 0.00 0.00 5.99 -51.93 -0.31 -0.32 16 41 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 42 H 0.07 1.32 6.56 -51.92 -0.34 0.98 16 43 H 0.06 1.02 6.81 -51.93 -0.35 0.66 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 48 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 378.42 15.07 5.70 5.70 Total: -1.00 -32.87 378.42 -9.41 -42.28 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -8.14 Total: 0.37 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: -0.64 Total: 14.26 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: -0.84 Total: -57.20 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.47 Total: -21.17 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.87 -9.41 -42.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980441497.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.932 kcal (2) G-P(sol) polarization free energy of solvation -32.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds