Wall clock time and date at job start Tue Mar 31 2020 04:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47079 * 2 1 4 4 H 1.08997 * 109.47353 * 55.74710 * 3 2 1 5 5 C 1.50703 * 109.46693 * 175.74547 * 3 2 1 6 6 O 1.21280 * 120.00074 * 97.92352 * 5 3 2 7 7 N 1.34776 * 120.00185 * 277.91689 * 5 3 2 8 8 C 1.47425 * 125.65198 * 184.61969 * 7 5 3 9 9 C 1.55122 * 104.72344 * 155.81727 * 8 7 5 10 10 C 1.55160 * 101.48781 * 37.29929 * 9 8 7 11 11 H 1.09001 * 110.87490 * 82.76284 * 10 9 8 12 12 N 1.46500 * 110.72247 * 205.96982 * 10 9 8 13 13 C 1.46500 * 119.99910 * 53.51484 * 12 10 9 14 14 C 1.36936 * 120.00013 * 233.52137 * 12 10 9 15 15 H 1.07995 * 119.99721 * 23.03959 * 14 12 10 16 16 C 1.38810 * 119.99739 * 203.04073 * 14 12 10 17 17 N 1.31620 * 120.00145 * 12.69049 * 16 14 12 18 18 Si 1.86800 * 119.99810 * 192.68372 * 16 14 12 19 19 H 1.48504 * 109.47162 * 60.00325 * 18 16 14 20 20 H 1.48500 * 109.47455 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47349 * 299.99930 * 18 16 14 22 22 C 1.47021 * 125.64520 * 4.93029 * 7 5 3 23 23 N 1.46496 * 109.47050 * 295.74279 * 3 2 1 24 24 C 1.46821 * 124.33454 * 119.98582 * 23 3 2 25 25 C 1.54479 * 105.44681 * 196.99885 * 24 23 3 26 26 C 1.54631 * 101.79643 * 334.63206 * 25 24 23 27 27 C 1.34421 * 124.35122 * 300.02750 * 23 3 2 28 28 O 1.21286 * 124.93864 * 359.54860 * 27 23 3 29 29 H 1.08992 * 109.47006 * 60.00166 * 1 2 3 30 30 H 1.09002 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46689 * 300.00222 * 1 2 3 32 32 H 1.08996 * 109.47151 * 239.99613 * 2 1 3 33 33 H 1.09006 * 109.47042 * 120.00053 * 2 1 3 34 34 H 1.08995 * 110.36596 * 274.75165 * 8 7 5 35 35 H 1.08999 * 110.36337 * 37.06896 * 8 7 5 36 36 H 1.09005 * 111.19478 * 279.19215 * 9 8 7 37 37 H 1.09002 * 110.94224 * 155.28963 * 9 8 7 38 38 H 1.09007 * 109.47008 * 88.00666 * 13 12 10 39 39 H 1.09000 * 109.47428 * 208.00301 * 13 12 10 40 40 H 1.09000 * 109.47775 * 328.01075 * 13 12 10 41 41 H 0.96999 * 119.99678 * 179.97438 * 17 16 14 42 42 H 1.09008 * 109.88201 * 300.43349 * 22 7 5 43 43 H 1.08993 * 109.88599 * 61.60514 * 22 7 5 44 44 H 1.09001 * 110.23896 * 78.02062 * 24 23 3 45 45 H 1.08998 * 110.28523 * 316.00604 * 24 23 3 46 46 H 1.08998 * 110.97524 * 216.49005 * 25 24 23 47 47 H 1.09008 * 110.96500 * 92.76657 * 25 24 23 48 48 H 1.09002 * 110.48429 * 143.46041 * 26 25 24 49 49 H 1.08993 * 110.48284 * 265.96239 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6158 1.9779 0.8494 5 6 3.5434 1.4437 0.1054 6 8 4.2212 1.5632 -0.8932 7 7 4.1346 1.3121 1.3094 8 6 5.5837 1.3925 1.5684 9 6 5.6953 1.8018 3.0605 10 6 4.5170 1.0104 3.6871 11 1 4.8085 -0.0186 3.8973 12 7 4.0383 1.6705 4.9042 13 6 3.6576 3.0847 4.8692 14 6 3.9467 0.9656 6.0746 15 1 4.5457 0.0786 6.2190 16 6 3.0841 1.3911 7.0754 17 7 2.1788 2.3109 6.8168 18 14 3.2077 0.6580 8.7891 19 1 4.5595 0.9226 9.3443 20 1 2.1819 1.2760 9.6671 21 1 2.9798 -0.8077 8.7182 22 6 3.4418 1.0582 2.5810 23 7 1.6372 2.1028 -1.2441 24 6 0.7908 3.3008 -1.3093 25 6 0.2854 3.3686 -2.7676 26 6 1.3932 2.5976 -3.5222 27 6 1.9943 1.6894 -2.4723 28 8 2.6968 0.7285 -2.7048 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 6.0531 0.4229 1.4025 35 1 6.0413 2.1502 0.9324 36 1 5.5555 2.8756 3.1861 37 1 6.6484 1.4822 3.4819 38 1 2.6074 3.1715 4.5904 39 1 3.8098 3.5265 5.8539 40 1 4.2722 3.6085 4.1370 41 1 1.5758 2.6079 7.5161 42 1 2.7353 1.8629 2.7853 43 1 2.9167 0.1043 2.5331 44 1 1.3758 4.1892 -1.0712 45 1 -0.0503 3.2070 -0.6226 46 1 0.2248 4.4009 -3.1119 47 1 -0.6775 2.8680 -2.8703 48 1 0.9640 2.0105 -4.3341 49 1 2.1436 3.2879 -3.9074 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980441497.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:38:35 Heat of formation + Delta-G solvation = -52.079231 kcal Electronic energy + Delta-G solvation = -29271.234543 eV Core-core repulsion = 25426.581719 eV Total energy + Delta-G solvation = -3844.652824 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.94425 -40.62486 -38.84014 -37.37770 -36.47091 -35.85747 -33.38923 -31.98653 -31.56317 -29.38121 -28.45890 -28.07847 -27.99613 -25.18644 -23.96841 -23.17475 -22.71025 -21.13819 -20.99899 -19.61504 -18.92507 -18.46266 -17.75510 -17.39141 -17.14441 -16.71750 -16.30138 -16.13176 -15.56614 -15.27163 -15.06475 -14.79580 -14.58623 -14.53415 -14.34423 -14.12927 -13.95804 -13.81565 -13.50914 -13.38937 -13.33767 -13.09860 -12.93282 -12.69648 -12.52032 -12.44457 -12.36032 -12.25680 -12.18121 -12.10592 -11.98607 -11.79959 -11.79221 -11.46118 -11.03134 -10.59905 -10.56909 -9.73553 -9.60525 -8.77700 -7.82820 -5.29516 1.42032 1.51520 1.52968 1.58665 1.62516 1.83924 2.23576 2.53433 3.23520 3.32493 3.49324 3.66398 3.69390 3.82021 3.83332 3.88196 3.92820 4.07116 4.18404 4.26510 4.30037 4.35790 4.41848 4.42373 4.63748 4.67175 4.68299 4.73947 4.81383 4.82700 4.87468 4.97199 5.04675 5.04773 5.10517 5.14611 5.19560 5.23472 5.27045 5.32005 5.43372 5.55410 5.66469 5.73828 6.22407 6.34355 6.45241 7.04096 7.16828 7.31360 7.86193 8.30847 9.21307 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.018748 B = 0.003303 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.172321 B = 8474.542770 C = 9026.867487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.150 3.850 4 H 0.122 0.878 5 C 0.508 3.492 6 O -0.562 6.562 7 N -0.613 5.613 8 C 0.113 3.887 9 C -0.137 4.137 10 C 0.166 3.834 11 H 0.081 0.919 12 N -0.598 5.598 13 C 0.177 3.823 14 C -0.268 4.268 15 H 0.073 0.927 16 C -0.043 4.043 17 N -0.932 5.932 18 Si 0.965 3.035 19 H -0.281 1.281 20 H -0.297 1.297 21 H -0.276 1.276 22 C 0.090 3.910 23 N -0.611 5.611 24 C 0.092 3.908 25 C -0.113 4.113 26 C -0.150 4.150 27 C 0.504 3.496 28 O -0.565 6.565 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.002 0.998 39 H 0.027 0.973 40 H 0.025 0.975 41 H 0.249 0.751 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.100 0.900 46 H 0.117 0.883 47 H 0.099 0.901 48 H 0.110 0.890 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.742 2.972 -15.668 16.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.043 3.957 4 H 0.140 0.860 5 C 0.296 3.704 6 O -0.441 6.441 7 N -0.347 5.347 8 C -0.009 4.009 9 C -0.176 4.176 10 C 0.057 3.943 11 H 0.099 0.901 12 N -0.319 5.319 13 C 0.032 3.968 14 C -0.397 4.397 15 H 0.091 0.909 16 C -0.239 4.239 17 N -0.578 5.578 18 Si 0.793 3.207 19 H -0.207 1.207 20 H -0.223 1.223 21 H -0.202 1.202 22 C -0.035 4.035 23 N -0.345 5.345 24 C -0.029 4.029 25 C -0.150 4.150 26 C -0.190 4.190 27 C 0.294 3.706 28 O -0.443 6.443 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.020 0.980 39 H 0.046 0.954 40 H 0.043 0.957 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.118 0.882 46 H 0.136 0.864 47 H 0.117 0.883 48 H 0.129 0.871 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.170 2.606 -16.193 17.197 hybrid contribution 0.236 -0.366 1.251 1.325 sum -4.934 2.240 -14.941 15.894 Atomic orbital electron populations 1.21640 0.92263 1.02785 1.02574 1.21751 0.98908 0.93313 1.02611 1.20806 0.89659 0.96665 0.88555 0.85997 1.21129 0.91610 0.76105 0.81555 1.90710 1.66422 1.50898 1.36034 1.48602 1.08861 1.70397 1.06871 1.22234 0.80909 1.01394 0.96411 1.23224 1.00352 1.01256 0.92800 1.21497 0.91507 0.96459 0.84816 0.90059 1.44017 1.76113 1.06833 1.04913 1.20515 0.95260 0.83405 0.97622 1.19521 1.17861 1.09491 0.92876 0.90881 1.25680 0.95925 0.99966 1.02348 1.70192 1.20618 1.34239 1.32790 0.85390 0.76879 0.78094 0.80309 1.20732 1.22284 1.20218 1.22770 0.97235 1.00751 0.82704 1.48223 1.51770 1.30026 1.04480 1.22468 0.94345 0.85894 1.00228 1.22614 0.97838 1.03182 0.91374 1.22357 1.00315 0.98981 0.97308 1.21665 0.78910 0.84673 0.85361 1.90674 1.38685 1.30837 1.84104 0.92141 0.91560 0.91347 0.92682 0.90558 0.90981 0.91405 0.91092 0.88845 0.98018 0.95401 0.95682 0.94200 0.91849 0.91328 0.90954 0.88177 0.86441 0.88281 0.87140 0.87535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.79 71.98 0.70 -2.03 16 2 C -0.13 -3.40 5.32 30.60 0.16 -3.24 16 3 C 0.15 4.20 2.09 44.25 0.09 4.29 16 4 H 0.12 3.04 7.33 -2.39 -0.02 3.02 16 5 C 0.51 17.85 7.00 87.66 0.61 18.46 16 6 O -0.56 -24.02 14.33 17.79 0.25 -23.76 16 7 N -0.61 -20.19 3.32 -811.36 -2.70 -22.89 16 8 C 0.11 3.46 6.90 86.93 0.60 4.06 16 9 C -0.14 -4.24 6.62 32.06 0.21 -4.02 16 10 C 0.17 6.05 3.44 46.18 0.16 6.21 16 11 H 0.08 2.94 7.93 -2.39 -0.02 2.92 16 12 N -0.60 -27.11 2.93 -696.13 -2.04 -29.15 16 13 C 0.18 8.02 7.99 127.77 1.02 9.04 16 14 C -0.27 -13.56 9.61 84.03 0.81 -12.75 16 15 H 0.07 3.58 7.83 -2.91 -0.02 3.56 16 16 C -0.04 -2.27 5.06 84.86 0.43 -1.84 16 17 N -0.93 -51.40 10.74 21.65 0.23 -51.17 16 18 Si 0.96 42.57 29.57 68.60 2.03 44.60 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 20 H -0.30 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 22 C 0.09 3.02 5.86 86.73 0.51 3.53 16 23 N -0.61 -15.16 2.19 -798.07 -1.75 -16.90 16 24 C 0.09 1.37 7.31 86.82 0.63 2.00 16 25 C -0.11 -1.08 7.18 31.65 0.23 -0.85 16 26 C -0.15 -2.54 6.86 30.59 0.21 -2.33 16 27 C 0.50 14.60 6.77 87.90 0.60 15.20 16 28 O -0.57 -22.44 14.62 17.77 0.26 -22.18 16 29 H 0.06 1.14 7.73 -2.39 -0.02 1.12 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.05 1.79 6.67 -2.39 -0.02 1.78 16 33 H 0.08 2.05 6.68 -2.38 -0.02 2.03 16 34 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.07 2.11 8.08 -2.39 -0.02 2.09 16 36 H 0.07 2.32 6.00 -2.38 -0.01 2.30 16 37 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.00 0.08 7.42 -2.38 -0.02 0.06 16 39 H 0.03 1.40 6.85 -2.39 -0.02 1.38 16 40 H 0.02 0.99 5.99 -2.39 -0.01 0.98 16 41 H 0.25 13.48 8.31 -92.71 -0.77 12.70 16 42 H 0.06 2.27 6.56 -2.38 -0.02 2.25 16 43 H 0.07 2.21 6.81 -2.39 -0.02 2.19 16 44 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 48 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -72.99 378.42 4.20 -68.79 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.93 Total: 16.92 kcal Atomic # 6 Polarization: 28.77 SS G_CDS: 6.98 Total: 35.74 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -6.25 Total: -120.11 kcal Atomic # 8 Polarization: -46.46 SS G_CDS: 0.51 Total: -45.94 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -72.99 4.20 -68.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980441497.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.709 kcal (2) G-P(sol) polarization free energy of solvation -72.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds