Wall clock time and date at job start Tue Mar 31 2020 05:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50707 * 109.46545 * 2 1 4 4 O 1.21273 * 120.00209 * 0.02562 * 3 2 1 5 5 N 1.34778 * 119.99780 * 179.72721 * 3 2 1 6 6 C 1.47431 * 125.64809 * 359.96458 * 5 3 2 7 7 C 1.55124 * 104.72009 * 155.82084 * 6 5 3 8 8 C 1.55149 * 101.48854 * 37.29739 * 7 6 5 9 9 H 1.09000 * 110.72404 * 82.69591 * 8 7 6 10 10 C 1.50707 * 110.72195 * 205.97061 * 8 7 6 11 11 O 1.21281 * 120.00242 * 113.51806 * 10 8 7 12 12 N 1.34779 * 119.99787 * 293.52511 * 10 8 7 13 13 C 1.46500 * 120.00073 * 179.97438 * 12 10 8 14 14 C 1.52995 * 109.47136 * 174.91092 * 13 12 10 15 15 H 1.08998 * 109.87703 * 55.57171 * 14 13 12 16 16 C 1.54328 * 109.88380 * 294.55504 * 14 13 12 17 17 C 1.55151 * 102.94239 * 218.39013 * 16 14 13 18 18 C 1.54907 * 101.58633 * 35.50202 * 17 16 14 19 19 N 1.47022 * 109.88239 * 176.58932 * 14 13 12 20 20 C 1.36937 * 125.64475 * 298.31030 * 19 14 13 21 21 H 1.07994 * 120.00633 * 346.94586 * 20 19 14 22 22 C 1.38817 * 119.99752 * 166.94595 * 20 19 14 23 23 N 1.31617 * 119.99844 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00049 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47222 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47208 * 120.00198 * 24 22 20 27 27 H 1.48500 * 109.47242 * 239.99935 * 24 22 20 28 28 C 1.47023 * 125.65093 * 180.27625 * 5 3 2 29 29 H 1.09000 * 109.47588 * 60.00054 * 1 2 3 30 30 H 1.08999 * 109.46722 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47076 * 299.99629 * 1 2 3 32 32 H 1.08991 * 109.47224 * 240.00126 * 2 1 3 33 33 H 1.08994 * 109.47216 * 119.99712 * 2 1 3 34 34 H 1.09001 * 110.36339 * 274.75196 * 6 5 3 35 35 H 1.08995 * 110.36290 * 37.06799 * 6 5 3 36 36 H 1.09004 * 111.18946 * 279.18764 * 7 6 5 37 37 H 1.09004 * 110.90348 * 155.27650 * 7 6 5 38 38 H 0.97000 * 119.99841 * 359.97438 * 12 10 8 39 39 H 1.08997 * 109.47056 * 294.91464 * 13 12 10 40 40 H 1.09007 * 109.47050 * 54.91114 * 13 12 10 41 41 H 1.08997 * 110.72002 * 336.75308 * 16 14 13 42 42 H 1.09002 * 110.71817 * 99.84746 * 16 14 13 43 43 H 1.09003 * 111.00286 * 153.58077 * 17 16 14 44 44 H 1.09002 * 111.00450 * 277.39008 * 17 16 14 45 45 H 1.09000 * 110.36773 * 81.82702 * 18 17 16 46 46 H 1.08989 * 110.37142 * 204.04278 * 18 17 16 47 47 H 0.97007 * 120.00094 * 179.97438 * 23 22 20 48 48 H 1.09006 * 109.87956 * 300.43986 * 28 5 3 49 49 H 1.08999 * 109.88099 * 61.44551 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6673 0.0056 6 6 4.4210 0.6465 0.0127 7 6 5.6559 1.3598 -0.5977 8 6 5.5100 2.7879 -0.0093 9 1 5.9196 2.8331 0.9997 10 6 6.1755 3.8032 -0.9025 11 8 5.5064 4.6324 -1.4817 12 7 7.5143 3.7895 -1.0575 13 6 8.1612 4.7760 -1.9261 14 6 9.6804 4.6234 -1.8281 15 1 9.9660 3.5988 -2.0658 16 6 10.1531 4.9830 -0.4037 17 6 11.4865 5.7340 -0.6593 18 6 11.1709 6.4895 -1.9742 19 7 10.3374 5.5542 -2.7574 20 6 10.1986 5.5524 -4.1197 21 1 9.7407 4.7089 -4.6149 22 6 10.6467 6.6348 -4.8644 23 7 11.2053 7.6626 -4.2610 24 14 10.4569 6.6328 -6.7227 25 1 9.8020 5.3711 -7.1520 26 1 9.6217 7.7890 -7.1362 27 1 11.7955 6.7372 -7.3571 28 6 3.9813 2.9985 0.0120 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.6314 0.3250 1.0328 35 1 4.1329 -0.2057 -0.6027 36 1 5.6021 1.3782 -1.6863 37 1 6.5811 0.8914 -0.2617 38 1 8.0494 3.1264 -0.5940 39 1 7.8456 4.6149 -2.9569 40 1 7.8757 5.7799 -1.6114 41 1 9.4318 5.6348 0.0890 42 1 10.3218 4.0817 0.1857 43 1 11.7034 6.4315 0.1498 44 1 12.3093 5.0328 -0.7988 45 1 10.6188 7.4052 -1.7625 46 1 12.0916 6.7180 -2.5109 47 1 11.5188 8.4189 -4.7814 48 1 3.6716 3.5573 -0.8712 49 1 3.6918 3.5392 0.9130 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028246433.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:53 Heat of formation + Delta-G solvation = -55.191127 kcal Electronic energy + Delta-G solvation = -27620.740839 eV Core-core repulsion = 23775.953073 eV Total energy + Delta-G solvation = -3844.787766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.64012 -39.43889 -37.84319 -37.13136 -34.34065 -33.22569 -32.54005 -31.96520 -29.73903 -29.44093 -28.64955 -25.84429 -24.83570 -23.94040 -23.03886 -22.19035 -20.38580 -19.98521 -19.43282 -19.40382 -17.77916 -17.41599 -16.72476 -16.03829 -15.92341 -15.63023 -15.21438 -14.89365 -14.75766 -14.27588 -13.96651 -13.88544 -13.57809 -13.37485 -13.15060 -12.99754 -12.60649 -12.46484 -12.24517 -12.08806 -11.97369 -11.93380 -11.75312 -11.62921 -11.51540 -11.36153 -11.19951 -10.97632 -10.83273 -10.29122 -10.12394 -10.07163 -9.97900 -9.88744 -9.76270 -9.61466 -8.91368 -8.73733 -8.62281 -6.89026 -5.79590 -3.16260 2.40894 2.62650 2.72752 3.34667 3.39397 3.44561 3.46001 3.99347 4.11289 4.41803 4.45247 4.55558 4.71796 4.74811 4.89226 4.91052 5.00586 5.08014 5.21416 5.29267 5.35063 5.38464 5.44940 5.47672 5.54910 5.58069 5.62564 5.67609 5.76082 5.87378 5.89936 5.99839 6.00719 6.08687 6.19231 6.41074 6.49770 6.57317 6.65089 6.75985 7.00564 7.22007 7.48550 7.56257 7.69976 7.76070 7.92975 8.21387 8.39110 9.13413 9.74418 10.41158 11.32115 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.018871 B = 0.002436 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.424383 B =11493.300585 C =12347.663762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C 0.524 3.476 4 O -0.537 6.537 5 N -0.622 5.622 6 C 0.100 3.900 7 C -0.123 4.123 8 C -0.123 4.123 9 H 0.110 0.890 10 C 0.516 3.484 11 O -0.536 6.536 12 N -0.719 5.719 13 C 0.108 3.892 14 C 0.152 3.848 15 H 0.037 0.963 16 C -0.126 4.126 17 C -0.148 4.148 18 C 0.170 3.830 19 N -0.589 5.589 20 C -0.233 4.233 21 H 0.077 0.923 22 C -0.002 4.002 23 N -0.915 5.915 24 Si 0.911 3.089 25 H -0.279 1.279 26 H -0.289 1.289 27 H -0.290 1.290 28 C 0.118 3.882 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.396 0.604 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.025 0.975 46 H 0.076 0.924 47 H 0.253 0.747 48 H 0.091 0.909 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.102 -18.418 13.399 24.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.179 4.179 3 C 0.313 3.687 4 O -0.414 6.414 5 N -0.358 5.358 6 C -0.023 4.023 7 C -0.161 4.161 8 C -0.145 4.145 9 H 0.129 0.871 10 C 0.300 3.700 11 O -0.413 6.413 12 N -0.369 5.369 13 C -0.017 4.017 14 C 0.044 3.956 15 H 0.054 0.946 16 C -0.164 4.164 17 C -0.187 4.187 18 C 0.046 3.954 19 N -0.313 5.313 20 C -0.361 4.361 21 H 0.094 0.906 22 C -0.200 4.200 23 N -0.562 5.562 24 Si 0.741 3.259 25 H -0.204 1.204 26 H -0.216 1.216 27 H -0.217 1.217 28 C -0.004 4.004 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.229 0.771 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.043 0.957 46 H 0.094 0.906 47 H 0.064 0.936 48 H 0.110 0.890 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.017 -17.148 12.754 24.044 hybrid contribution 0.294 -0.196 -0.729 0.810 sum -10.722 -17.344 12.025 23.672 Atomic orbital electron populations 1.21546 0.92924 1.01601 1.03498 1.21615 0.98611 0.93440 1.04190 1.20499 0.80200 0.92004 0.75960 1.90727 1.54281 1.46785 1.49597 1.48568 1.05289 1.08018 1.73884 1.22418 0.86928 0.91757 1.01197 1.22845 0.98404 0.93015 1.01854 1.22333 0.96128 0.95362 1.00697 0.87146 1.20110 0.82719 0.85019 0.82145 1.90741 1.63561 1.38866 1.48111 1.46092 1.06479 1.35242 1.49110 1.22279 0.94495 0.91214 0.93725 1.21116 0.89330 0.94907 0.90271 0.94555 1.22603 0.98134 0.99514 0.96130 1.23000 0.96194 0.99446 1.00077 1.21541 0.96073 0.90504 0.87325 1.44572 1.49935 1.35272 1.01564 1.19023 1.35671 1.01220 0.80217 0.90550 1.24901 1.00950 0.95733 0.98367 1.69940 1.44563 1.07814 1.33843 0.86066 0.77336 0.77525 0.84956 1.20387 1.21588 1.21690 1.21796 0.89782 0.84637 1.04196 0.91879 0.92006 0.91960 0.88951 0.89000 0.90719 0.90078 0.89663 0.88706 0.77109 0.91503 0.91567 0.91864 0.92414 0.92332 0.92280 0.95708 0.90609 0.93619 0.89032 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.20 37.16 0.34 -0.68 16 2 C -0.14 -0.96 5.42 -27.88 -0.15 -1.11 16 3 C 0.52 5.96 7.85 -10.98 -0.09 5.87 16 4 O -0.54 -8.52 16.31 5.56 0.09 -8.43 16 5 N -0.62 -6.25 3.33 -170.38 -0.57 -6.82 16 6 C 0.10 0.59 6.70 -2.41 -0.02 0.58 16 7 C -0.12 -0.83 6.53 -24.47 -0.16 -0.99 16 8 C -0.12 -1.16 3.34 -89.94 -0.30 -1.46 16 9 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 10 C 0.52 7.30 7.13 -10.98 -0.08 7.22 16 11 O -0.54 -10.36 15.41 5.56 0.09 -10.28 16 12 N -0.72 -9.64 5.34 -60.29 -0.32 -9.97 16 13 C 0.11 1.98 5.08 -4.04 -0.02 1.96 16 14 C 0.15 2.86 3.20 -66.95 -0.21 2.64 16 15 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 16 C -0.13 -1.98 6.14 -24.90 -0.15 -2.13 16 17 C -0.15 -2.62 7.08 -24.59 -0.17 -2.80 16 18 C 0.17 3.97 5.46 -2.35 -0.01 3.96 16 19 N -0.59 -14.26 3.14 -162.32 -0.51 -14.77 16 20 C -0.23 -6.28 9.75 -15.06 -0.15 -6.42 16 21 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 22 C 0.00 -0.06 5.47 -17.43 -0.10 -0.16 16 23 N -0.92 -26.44 10.54 55.49 0.58 -25.85 16 24 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 28 C 0.12 1.41 6.30 -3.06 -0.02 1.39 16 29 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 32 H 0.09 0.49 7.86 -51.93 -0.41 0.08 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 0.35 7.49 -51.93 -0.39 -0.04 16 36 H 0.08 0.72 8.04 -51.93 -0.42 0.30 16 37 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.40 3.92 8.36 -40.82 -0.34 3.58 16 39 H 0.07 1.42 7.89 -51.93 -0.41 1.01 16 40 H 0.07 1.39 8.06 -51.93 -0.42 0.97 16 41 H 0.06 0.99 7.80 -51.93 -0.40 0.59 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.02 0.63 8.10 -51.93 -0.42 0.21 16 46 H 0.08 1.98 6.82 -51.94 -0.35 1.62 16 47 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 48 H 0.09 1.41 6.80 -51.93 -0.35 1.06 16 49 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 390.58 15.07 5.89 5.89 Total: -1.00 -35.08 390.58 -9.59 -44.67 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -8.53 Total: 0.73 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -1.29 Total: 7.87 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.81 Total: -57.40 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.18 Total: -18.71 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.08 -9.59 -44.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028246433.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.520 kcal (2) G-P(sol) polarization free energy of solvation -35.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds