Wall clock time and date at job start Tue Mar 31 2020 05:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50707 * 109.46545 * 2 1 4 4 O 1.21273 * 120.00209 * 0.02562 * 3 2 1 5 5 N 1.34778 * 119.99780 * 179.72721 * 3 2 1 6 6 C 1.47431 * 125.64809 * 359.96458 * 5 3 2 7 7 C 1.55124 * 104.72009 * 155.82084 * 6 5 3 8 8 C 1.55149 * 101.48854 * 37.29739 * 7 6 5 9 9 H 1.09000 * 110.72404 * 82.69591 * 8 7 6 10 10 C 1.50707 * 110.72195 * 205.97061 * 8 7 6 11 11 O 1.21281 * 120.00242 * 113.51806 * 10 8 7 12 12 N 1.34779 * 119.99787 * 293.52511 * 10 8 7 13 13 C 1.46500 * 120.00073 * 179.97438 * 12 10 8 14 14 C 1.52995 * 109.47136 * 174.91092 * 13 12 10 15 15 H 1.08998 * 109.87703 * 55.57171 * 14 13 12 16 16 C 1.54328 * 109.88380 * 294.55504 * 14 13 12 17 17 C 1.55151 * 102.94239 * 218.39013 * 16 14 13 18 18 C 1.54907 * 101.58633 * 35.50202 * 17 16 14 19 19 N 1.47022 * 109.88239 * 176.58932 * 14 13 12 20 20 C 1.36937 * 125.64475 * 298.31030 * 19 14 13 21 21 H 1.07994 * 120.00633 * 346.94586 * 20 19 14 22 22 C 1.38817 * 119.99752 * 166.94595 * 20 19 14 23 23 N 1.31617 * 119.99844 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00049 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47222 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47208 * 120.00198 * 24 22 20 27 27 H 1.48500 * 109.47242 * 239.99935 * 24 22 20 28 28 C 1.47023 * 125.65093 * 180.27625 * 5 3 2 29 29 H 1.09000 * 109.47588 * 60.00054 * 1 2 3 30 30 H 1.08999 * 109.46722 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47076 * 299.99629 * 1 2 3 32 32 H 1.08991 * 109.47224 * 240.00126 * 2 1 3 33 33 H 1.08994 * 109.47216 * 119.99712 * 2 1 3 34 34 H 1.09001 * 110.36339 * 274.75196 * 6 5 3 35 35 H 1.08995 * 110.36290 * 37.06799 * 6 5 3 36 36 H 1.09004 * 111.18946 * 279.18764 * 7 6 5 37 37 H 1.09004 * 110.90348 * 155.27650 * 7 6 5 38 38 H 0.97000 * 119.99841 * 359.97438 * 12 10 8 39 39 H 1.08997 * 109.47056 * 294.91464 * 13 12 10 40 40 H 1.09007 * 109.47050 * 54.91114 * 13 12 10 41 41 H 1.08997 * 110.72002 * 336.75308 * 16 14 13 42 42 H 1.09002 * 110.71817 * 99.84746 * 16 14 13 43 43 H 1.09003 * 111.00286 * 153.58077 * 17 16 14 44 44 H 1.09002 * 111.00450 * 277.39008 * 17 16 14 45 45 H 1.09000 * 110.36773 * 81.82702 * 18 17 16 46 46 H 1.08989 * 110.37142 * 204.04278 * 18 17 16 47 47 H 0.97007 * 120.00094 * 179.97438 * 23 22 20 48 48 H 1.09006 * 109.87956 * 300.43986 * 28 5 3 49 49 H 1.08999 * 109.88099 * 61.44551 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6673 0.0056 6 6 4.4210 0.6465 0.0127 7 6 5.6559 1.3598 -0.5977 8 6 5.5100 2.7879 -0.0093 9 1 5.9196 2.8331 0.9997 10 6 6.1755 3.8032 -0.9025 11 8 5.5064 4.6324 -1.4817 12 7 7.5143 3.7895 -1.0575 13 6 8.1612 4.7760 -1.9261 14 6 9.6804 4.6234 -1.8281 15 1 9.9660 3.5988 -2.0658 16 6 10.1531 4.9830 -0.4037 17 6 11.4865 5.7340 -0.6593 18 6 11.1709 6.4895 -1.9742 19 7 10.3374 5.5542 -2.7574 20 6 10.1986 5.5524 -4.1197 21 1 9.7407 4.7089 -4.6149 22 6 10.6467 6.6348 -4.8644 23 7 11.2053 7.6626 -4.2610 24 14 10.4569 6.6328 -6.7227 25 1 9.8020 5.3711 -7.1520 26 1 9.6217 7.7890 -7.1362 27 1 11.7955 6.7372 -7.3571 28 6 3.9813 2.9985 0.0120 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.6314 0.3250 1.0328 35 1 4.1329 -0.2057 -0.6027 36 1 5.6021 1.3782 -1.6863 37 1 6.5811 0.8914 -0.2617 38 1 8.0494 3.1264 -0.5940 39 1 7.8456 4.6149 -2.9569 40 1 7.8757 5.7799 -1.6114 41 1 9.4318 5.6348 0.0890 42 1 10.3218 4.0817 0.1857 43 1 11.7034 6.4315 0.1498 44 1 12.3093 5.0328 -0.7988 45 1 10.6188 7.4052 -1.7625 46 1 12.0916 6.7180 -2.5109 47 1 11.5188 8.4189 -4.7814 48 1 3.6716 3.5573 -0.8712 49 1 3.6918 3.5392 0.9130 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028246433.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:52 Heat of formation + Delta-G solvation = -80.866573 kcal Electronic energy + Delta-G solvation = -27621.854210 eV Core-core repulsion = 23775.953073 eV Total energy + Delta-G solvation = -3845.901137 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.56711 -40.54003 -39.32804 -38.12705 -35.79114 -34.42111 -33.92437 -32.77784 -31.40900 -30.37744 -30.02112 -26.97889 -26.45004 -25.33069 -23.68794 -23.14126 -22.00944 -21.30046 -20.81224 -20.16023 -18.97954 -18.41493 -18.15007 -17.32929 -16.92522 -16.68617 -16.49713 -16.35596 -15.79916 -15.76672 -15.44863 -14.79021 -14.64940 -14.53754 -14.16290 -13.90024 -13.83963 -13.66651 -13.38397 -13.28801 -13.15622 -13.01249 -12.89031 -12.87300 -12.69667 -12.59521 -12.37052 -12.06932 -11.99795 -11.85949 -11.82793 -11.70981 -11.47088 -11.38236 -10.96524 -10.90050 -10.70883 -10.08728 -9.71492 -8.87620 -7.89481 -5.26388 1.41870 1.44577 1.53243 1.58543 1.60335 1.81391 2.27260 2.49100 3.26445 3.30244 3.46950 3.67641 3.75105 3.85399 3.98064 4.00367 4.17513 4.22536 4.23827 4.26708 4.30388 4.33981 4.46787 4.55886 4.60956 4.72221 4.74819 4.79508 4.87278 4.94956 4.98234 5.00398 5.02328 5.05555 5.15816 5.16602 5.22562 5.23950 5.36053 5.38730 5.47566 5.58701 5.67203 5.78458 6.22240 6.47843 6.60505 7.07568 7.12014 7.29318 7.75517 8.41046 9.21322 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.018871 B = 0.002436 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.424383 B =11493.300585 C =12347.663762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.128 4.128 3 C 0.511 3.489 4 O -0.599 6.599 5 N -0.622 5.622 6 C 0.097 3.903 7 C -0.117 4.117 8 C -0.106 4.106 9 H 0.153 0.847 10 C 0.513 3.487 11 O -0.597 6.597 12 N -0.698 5.698 13 C 0.128 3.872 14 C 0.149 3.851 15 H 0.058 0.942 16 C -0.112 4.112 17 C -0.133 4.133 18 C 0.170 3.830 19 N -0.612 5.612 20 C -0.235 4.235 21 H 0.079 0.921 22 C -0.063 4.063 23 N -0.947 5.947 24 Si 0.970 3.030 25 H -0.266 1.266 26 H -0.298 1.298 27 H -0.288 1.288 28 C 0.115 3.885 29 H 0.039 0.961 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.117 0.883 33 H 0.126 0.874 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.064 0.936 37 H 0.138 0.862 38 H 0.420 0.580 39 H 0.030 0.970 40 H 0.031 0.969 41 H 0.062 0.938 42 H 0.111 0.889 43 H 0.081 0.919 44 H 0.072 0.928 45 H -0.013 1.013 46 H 0.038 0.962 47 H 0.247 0.753 48 H 0.042 0.958 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.195 -23.207 15.870 29.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C 0.302 3.698 4 O -0.481 6.481 5 N -0.356 5.356 6 C -0.024 4.024 7 C -0.155 4.155 8 C -0.127 4.127 9 H 0.170 0.830 10 C 0.300 3.700 11 O -0.478 6.478 12 N -0.350 5.350 13 C 0.001 3.999 14 C 0.041 3.959 15 H 0.075 0.925 16 C -0.149 4.149 17 C -0.172 4.172 18 C 0.045 3.955 19 N -0.337 5.337 20 C -0.364 4.364 21 H 0.096 0.904 22 C -0.257 4.257 23 N -0.595 5.595 24 Si 0.799 3.201 25 H -0.190 1.190 26 H -0.226 1.226 27 H -0.214 1.214 28 C -0.009 4.009 29 H 0.058 0.942 30 H 0.109 0.891 31 H 0.064 0.936 32 H 0.135 0.865 33 H 0.144 0.856 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.082 0.918 37 H 0.156 0.844 38 H 0.258 0.742 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.081 0.919 42 H 0.130 0.870 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.005 0.995 46 H 0.057 0.943 47 H 0.056 0.944 48 H 0.061 0.939 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.068 -22.044 15.271 28.644 hybrid contribution -0.037 1.283 -1.489 1.966 sum -10.105 -20.761 13.782 26.890 Atomic orbital electron populations 1.21566 0.93761 1.02799 1.01602 1.21686 0.97810 0.90380 1.06840 1.21501 0.80172 0.93405 0.74738 1.90697 1.55964 1.48936 1.52467 1.48728 1.05918 1.08203 1.72770 1.22801 0.84778 0.91013 1.03762 1.22966 1.00993 0.90891 1.00675 1.22303 0.93462 0.95357 1.01595 0.82988 1.21006 0.82423 0.84930 0.81666 1.90734 1.64875 1.41577 1.50635 1.45726 1.06518 1.34567 1.48196 1.21676 0.94827 0.90814 0.92552 1.21362 0.88629 0.94533 0.91331 0.92476 1.22606 0.96473 1.01511 0.94324 1.22862 0.97748 0.99567 0.97013 1.21358 0.93797 0.90312 0.90007 1.44848 1.51173 1.36069 1.01589 1.19342 1.33983 1.00939 0.82121 0.90361 1.25666 1.01789 0.95912 1.02328 1.70145 1.46203 1.08333 1.34846 0.85132 0.77049 0.77430 0.80503 1.19028 1.22576 1.21441 1.21632 0.91966 0.85747 1.01550 0.94212 0.89073 0.93587 0.86502 0.85613 0.87203 0.87567 0.91756 0.84366 0.74206 0.95195 0.95060 0.91912 0.87050 0.90079 0.90905 0.99462 0.94326 0.94399 0.93932 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.20 71.98 0.66 -1.23 16 2 C -0.13 -1.39 5.42 29.85 0.16 -1.23 16 3 C 0.51 11.24 7.85 87.66 0.69 11.93 16 4 O -0.60 -20.08 16.31 -3.01 -0.05 -20.13 16 5 N -0.62 -11.38 3.33 -811.35 -2.70 -14.08 16 6 C 0.10 0.67 6.70 86.93 0.58 1.25 16 7 C -0.12 -1.04 6.53 32.06 0.21 -0.83 16 8 C -0.11 -1.70 3.34 -10.35 -0.03 -1.74 16 9 H 0.15 1.30 8.14 -2.39 -0.02 1.29 16 10 C 0.51 14.14 7.13 87.66 0.63 14.77 16 11 O -0.60 -24.40 15.41 -3.03 -0.05 -24.44 16 12 N -0.70 -17.26 5.34 -463.05 -2.47 -19.73 16 13 C 0.13 4.73 5.08 86.38 0.44 5.17 16 14 C 0.15 5.32 3.20 45.34 0.15 5.47 16 15 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 16 C -0.11 -3.08 6.14 31.78 0.20 -2.88 16 17 C -0.13 -4.38 7.08 31.98 0.23 -4.16 16 18 C 0.17 8.15 5.46 86.79 0.47 8.62 16 19 N -0.61 -30.06 3.14 -667.46 -2.09 -32.15 16 20 C -0.23 -12.94 9.75 84.03 0.82 -12.12 16 21 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 22 C -0.06 -3.64 5.47 84.86 0.46 -3.17 16 23 N -0.95 -57.36 10.54 21.65 0.23 -57.14 16 24 Si 0.97 46.57 29.55 68.60 2.03 48.60 16 25 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 26 H -0.30 -14.64 7.11 99.48 0.71 -13.94 16 27 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 28 C 0.11 2.73 6.30 86.73 0.55 3.28 16 29 H 0.04 0.71 8.10 -2.39 -0.02 0.69 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.04 0.76 8.10 -2.39 -0.02 0.74 16 32 H 0.12 0.74 7.86 -2.39 -0.02 0.72 16 33 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.11 0.28 7.49 -2.39 -0.02 0.26 16 36 H 0.06 0.89 8.04 -2.38 -0.02 0.87 16 37 H 0.14 0.13 8.14 -2.38 -0.02 0.11 16 38 H 0.42 6.29 8.36 -92.71 -0.78 5.52 16 39 H 0.03 1.31 7.89 -2.39 -0.02 1.30 16 40 H 0.03 1.37 8.06 -2.38 -0.02 1.35 16 41 H 0.06 1.77 7.80 -2.39 -0.02 1.76 16 42 H 0.11 1.99 8.14 -2.39 -0.02 1.98 16 43 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 45 H -0.01 -0.69 8.10 -2.39 -0.02 -0.71 16 46 H 0.04 2.10 6.82 -2.39 -0.02 2.09 16 47 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 48 H 0.04 1.43 6.80 -2.38 -0.02 1.42 16 49 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -88.79 390.58 1.25 -87.54 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 0.15 Total: 8.41 kcal Atomic # 6 Polarization: 16.92 SS G_CDS: 6.20 Total: 23.13 kcal Atomic # 7 Polarization: -116.06 SS G_CDS: -7.04 Total: -123.10 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -0.10 Total: -44.57 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -88.79 1.25 -87.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028246433.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.671 kcal (2) G-P(sol) polarization free energy of solvation -88.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds