Wall clock time and date at job start Tue Mar 31 2020 04:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47027 * 2 1 4 4 N 1.46496 * 109.47050 * 120.00021 * 2 1 3 5 5 C 1.46759 * 124.34879 * 119.72633 * 4 2 1 6 6 C 1.54662 * 105.38326 * 162.85228 * 5 4 2 7 7 H 1.08991 * 111.22541 * 267.57884 * 6 5 4 8 8 C 1.50708 * 110.82082 * 143.77644 * 6 5 4 9 9 O 1.21278 * 120.00077 * 6.35103 * 8 6 5 10 10 N 1.34774 * 119.99912 * 186.34620 * 8 6 5 11 11 C 1.46500 * 119.99940 * 0.02562 * 10 8 6 12 12 C 1.46492 * 119.99992 * 179.97438 * 10 8 6 13 13 H 1.08999 * 110.88996 * 359.30371 * 12 10 8 14 14 C 1.55161 * 111.00563 * 123.18731 * 12 10 8 15 15 C 1.54315 * 102.94589 * 153.57727 * 14 12 10 16 16 N 1.47018 * 107.27271 * 337.80691 * 15 14 12 17 17 C 1.36938 * 125.65004 * 178.97904 * 16 15 14 18 18 H 1.08000 * 120.00056 * 174.78828 * 17 16 15 19 19 C 1.38818 * 119.99990 * 354.78447 * 17 16 15 20 20 N 1.31622 * 119.99654 * 7.05913 * 19 17 16 21 21 Si 1.86799 * 119.99960 * 187.05688 * 19 17 16 22 22 H 1.48497 * 109.47146 * 94.98724 * 21 19 17 23 23 H 1.48502 * 109.47107 * 214.98862 * 21 19 17 24 24 H 1.48501 * 109.46909 * 334.98907 * 21 19 17 25 25 C 1.47468 * 108.72171 * 358.97407 * 16 15 14 26 26 C 1.54619 * 101.68376 * 25.76964 * 6 5 4 27 27 C 1.34416 * 124.35085 * 300.02160 * 4 2 1 28 28 O 1.21287 * 124.94295 * 0.43468 * 27 4 2 29 29 H 1.08998 * 109.46835 * 300.00169 * 1 2 3 30 30 H 1.09001 * 109.46914 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47211 * 59.99888 * 1 2 3 32 32 H 1.08998 * 109.46835 * 239.99831 * 2 1 3 33 33 H 1.08998 * 109.47451 * 60.00208 * 3 2 1 34 34 H 1.08997 * 109.47438 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47216 * 300.00109 * 3 2 1 36 36 H 1.09000 * 110.24952 * 281.98214 * 5 4 2 37 37 H 1.09003 * 110.24639 * 43.98027 * 5 4 2 38 38 H 1.09007 * 109.47228 * 89.99518 * 11 10 8 39 39 H 1.09000 * 109.47293 * 209.99386 * 11 10 8 40 40 H 1.08994 * 109.47324 * 329.99828 * 11 10 8 41 41 H 1.09004 * 110.71677 * 271.94479 * 14 12 10 42 42 H 1.09000 * 110.71923 * 35.02778 * 14 12 10 43 43 H 1.09001 * 109.88687 * 97.22278 * 15 14 12 44 44 H 1.08997 * 109.87984 * 218.23337 * 15 14 12 45 45 H 0.97001 * 119.99702 * 179.97438 * 20 19 17 46 46 H 1.08996 * 110.35130 * 265.25176 * 25 16 15 47 47 H 1.09004 * 110.40515 * 142.92006 * 25 16 15 48 48 H 1.09000 * 110.48440 * 216.30962 * 26 6 5 49 49 H 1.08993 * 110.49131 * 93.66256 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8608 -1.8921 1.1727 6 6 3.4726 -1.9919 2.5897 7 1 4.4403 -1.4927 2.6378 8 6 3.5889 -3.4307 3.0228 9 8 3.3311 -4.3219 2.2416 10 7 3.9796 -3.7271 4.2781 11 6 4.2907 -2.6505 5.2218 12 6 4.0922 -5.1256 4.6993 13 1 3.8146 -5.7992 3.8886 14 6 5.5214 -5.4374 5.2166 15 6 5.2876 -6.6088 6.1936 16 7 3.8791 -6.5542 6.6114 17 6 3.2644 -7.4335 7.4624 18 1 2.2452 -7.2598 7.7746 19 6 3.9512 -8.5483 7.9235 20 7 5.2325 -8.6885 7.6571 21 14 3.0569 -9.8492 8.9222 22 1 2.6043 -10.9399 8.0219 23 1 3.9758 -10.4037 9.9486 24 1 1.8798 -9.2380 9.5900 25 6 3.2375 -5.3956 5.9627 26 6 2.4202 -1.2419 3.4386 27 6 1.7477 -0.3086 2.4561 28 8 1.0634 0.6453 2.7610 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.2559 -2.7728 0.9571 37 1 3.6504 -1.7847 0.4289 38 1 3.3875 -2.3704 5.7641 39 1 5.0467 -2.9936 5.9281 40 1 4.6692 -1.7866 4.6757 41 1 6.1704 -5.7432 4.3960 42 1 5.9399 -4.5756 5.7365 43 1 5.4890 -7.5555 5.6923 44 1 5.9385 -6.5032 7.0614 45 1 5.7125 -9.4673 7.9797 46 1 3.2572 -4.5309 6.6260 47 1 2.2120 -5.6366 5.6827 48 1 2.9050 -0.6746 4.2331 49 1 1.6968 -1.9424 3.8556 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033118321.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:06 Heat of formation + Delta-G solvation = -33.787553 kcal Electronic energy + Delta-G solvation = -28416.949617 eV Core-core repulsion = 24573.089980 eV Total energy + Delta-G solvation = -3843.859637 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.21594 -39.68309 -37.51899 -36.50606 -35.31932 -34.81762 -32.22651 -30.58621 -29.18992 -28.01415 -27.62772 -27.49360 -26.70015 -24.68901 -23.33501 -22.69731 -20.37178 -20.15577 -19.18798 -18.85039 -17.69462 -17.02905 -16.91154 -16.42788 -15.94348 -15.25032 -15.04813 -14.65740 -14.46380 -14.18008 -14.02103 -13.95573 -13.83394 -13.56841 -13.06872 -13.01393 -12.83588 -12.46276 -12.41906 -12.36119 -12.26559 -12.07158 -11.79343 -11.74659 -11.62392 -11.55943 -11.41324 -10.98424 -10.90314 -10.81345 -10.36217 -10.12237 -10.01487 -9.85816 -9.77510 -9.60820 -8.97630 -8.63705 -8.46334 -6.88299 -5.76436 -3.09389 2.35256 2.52658 2.60659 3.00427 3.39162 3.44679 3.46175 3.92092 4.03943 4.38869 4.48344 4.51448 4.63109 4.72986 4.80119 4.88584 5.08316 5.16281 5.24925 5.26288 5.31287 5.32785 5.37673 5.43985 5.48814 5.48966 5.54358 5.55370 5.64655 5.65131 5.69723 5.82783 5.87149 5.95099 6.12893 6.22896 6.34678 6.44006 6.51780 6.62036 6.85558 6.87025 7.44588 7.49474 7.57322 7.78058 7.93835 8.13100 8.21310 9.17155 9.77309 10.42175 11.35564 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.028078 B = 0.002484 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.970501 B =11268.799855 C =11480.291742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.152 3.848 3 C -0.167 4.167 4 N -0.617 5.617 5 C 0.118 3.882 6 C -0.121 4.121 7 H 0.118 0.882 8 C 0.524 3.476 9 O -0.537 6.537 10 N -0.595 5.595 11 C 0.071 3.929 12 C 0.122 3.878 13 H 0.108 0.892 14 C -0.153 4.153 15 C 0.178 3.822 16 N -0.603 5.603 17 C -0.230 4.230 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.911 3.089 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.132 3.868 26 C -0.147 4.147 27 C 0.522 3.478 28 O -0.528 6.528 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.050 0.950 44 H 0.044 0.956 45 H 0.253 0.747 46 H 0.022 0.978 47 H 0.041 0.959 48 H 0.111 0.889 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.668 19.059 -14.183 23.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.050 3.950 3 C -0.225 4.225 4 N -0.352 5.352 5 C -0.005 4.005 6 C -0.143 4.143 7 H 0.135 0.865 8 C 0.310 3.690 9 O -0.414 6.414 10 N -0.327 5.327 11 C -0.072 4.072 12 C 0.019 3.981 13 H 0.126 0.874 14 C -0.192 4.192 15 C 0.053 3.947 16 N -0.330 5.330 17 C -0.358 4.358 18 H 0.097 0.903 19 C -0.202 4.202 20 N -0.567 5.567 21 Si 0.742 3.258 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.004 3.996 26 C -0.188 4.188 27 C 0.310 3.690 28 O -0.405 6.405 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.039 0.961 47 H 0.060 0.940 48 H 0.130 0.870 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.130 18.921 -14.374 23.857 hybrid contribution -0.211 -0.777 0.625 1.019 sum -2.341 18.144 -13.749 22.885 Atomic orbital electron populations 1.22193 0.94628 1.02572 1.03288 1.20948 0.94592 0.93033 0.86418 1.22179 1.01245 0.95753 1.03318 1.48502 1.51607 1.28808 1.06238 1.22031 0.94565 0.88049 0.95842 1.22248 1.01040 0.94779 0.96229 0.86456 1.20009 0.77066 0.89965 0.81962 1.90715 1.49893 1.48623 1.52173 1.47772 1.65923 1.07738 1.11228 1.21935 1.01818 0.89665 0.93830 1.22509 0.97195 0.80129 0.98311 0.87446 1.23246 0.95342 1.00604 0.99971 1.21148 0.85744 0.93429 0.94340 1.44385 1.06759 1.28920 1.52894 1.19050 0.96750 1.00439 1.19596 0.90347 1.24835 0.96050 0.98422 1.00936 1.69968 1.06928 1.29524 1.50254 0.86106 0.78543 0.81972 0.79201 1.21539 1.21744 1.20596 1.21753 0.95407 0.91320 0.91097 1.22476 0.98866 0.99048 0.98370 1.20729 0.80118 0.84478 0.83670 1.90702 1.39379 1.28939 1.81473 0.90943 0.92342 0.91474 0.89336 0.90974 0.92477 0.91468 0.89018 0.89782 0.92068 0.90076 0.91314 0.91884 0.92011 0.93157 0.93818 0.93673 0.96055 0.94049 0.87042 0.87167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 9.20 37.16 0.34 -1.07 16 2 C 0.15 1.21 3.47 -67.93 -0.24 0.97 16 3 C -0.17 -1.26 9.20 37.16 0.34 -0.92 16 4 N -0.62 -5.73 2.83 -164.73 -0.47 -6.19 16 5 C 0.12 1.03 6.61 -3.03 -0.02 1.01 16 6 C -0.12 -1.06 2.59 -90.04 -0.23 -1.30 16 7 H 0.12 0.77 7.56 -51.93 -0.39 0.38 16 8 C 0.52 6.72 6.99 -10.98 -0.08 6.64 16 9 O -0.54 -8.90 14.94 5.56 0.08 -8.81 16 10 N -0.60 -7.86 2.91 -171.48 -0.50 -8.36 16 11 C 0.07 0.69 7.73 59.85 0.46 1.15 16 12 C 0.12 2.12 3.45 -65.78 -0.23 1.89 16 13 H 0.11 2.11 7.01 -51.93 -0.36 1.74 16 14 C -0.15 -2.71 6.51 -24.90 -0.16 -2.87 16 15 C 0.18 4.20 5.38 -3.07 -0.02 4.18 16 16 N -0.60 -15.07 3.40 -170.04 -0.58 -15.65 16 17 C -0.23 -6.35 10.26 -15.06 -0.15 -6.50 16 18 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 19 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 20 N -0.92 -26.67 10.36 55.49 0.57 -26.09 16 21 Si 0.91 21.95 29.56 -169.99 -5.02 16.92 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.13 2.64 6.81 -2.50 -0.02 2.62 16 26 C -0.15 -1.31 5.04 -26.74 -0.13 -1.45 16 27 C 0.52 5.77 7.41 -10.86 -0.08 5.69 16 28 O -0.53 -7.47 15.12 5.55 0.08 -7.38 16 29 H 0.07 0.77 6.77 -51.93 -0.35 0.42 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.09 0.55 8.07 -51.93 -0.42 0.13 16 33 H 0.07 0.71 6.80 -51.93 -0.35 0.36 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.96 7.07 -51.93 -0.37 0.59 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.56 7.84 -51.93 -0.41 0.15 16 39 H 0.08 0.86 6.21 -51.93 -0.32 0.54 16 40 H 0.07 0.46 5.96 -51.93 -0.31 0.15 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.06 0.98 6.20 -51.93 -0.32 0.66 16 43 H 0.05 1.33 7.30 -51.93 -0.38 0.95 16 44 H 0.04 1.13 7.61 -51.93 -0.40 0.73 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.02 0.41 7.10 -51.93 -0.37 0.04 16 47 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.11 0.80 7.10 -51.93 -0.37 0.43 16 49 H 0.11 1.08 7.89 -51.93 -0.41 0.67 16 LS Contribution 376.20 15.07 5.67 5.67 Total: -1.00 -33.32 376.20 -8.50 -41.82 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -8.04 Total: -1.71 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -0.31 Total: 9.80 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.97 Total: -56.30 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: 0.17 Total: -16.20 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.32 -8.50 -41.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033118321.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.031 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds