Wall clock time and date at job start Tue Mar 31 2020 04:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47356 * 2 1 4 4 H 1.09000 * 110.00097 * 305.03329 * 3 2 1 5 5 C 1.54334 * 109.98950 * 183.99471 * 3 2 1 6 6 H 1.08998 * 110.51814 * 336.97933 * 5 3 2 7 7 N 1.46505 * 111.00051 * 100.13223 * 5 3 2 8 8 C 1.34781 * 119.99944 * 200.23280 * 7 5 3 9 9 O 1.21283 * 119.99622 * 359.97438 * 8 7 5 10 10 C 1.50697 * 119.99879 * 179.97438 * 8 7 5 11 11 C 1.52998 * 109.67370 * 300.00378 * 10 8 7 12 12 C 1.53349 * 109.67079 * 179.50218 * 10 8 7 13 13 C 1.52919 * 108.67227 * 172.73931 * 12 10 8 14 14 N 1.45762 * 110.48989 * 50.74959 * 13 12 10 15 15 C 1.33356 * 124.10585 * 340.95304 * 14 13 12 16 16 O 1.21278 * 118.24385 * 182.22199 * 15 14 13 17 17 C 1.50189 * 123.51812 * 2.13228 * 15 14 13 18 18 C 1.55161 * 103.02001 * 218.66757 * 5 3 2 19 19 C 1.54908 * 101.57913 * 35.30926 * 18 5 3 20 20 N 1.47027 * 109.87784 * 66.13274 * 3 2 1 21 21 C 1.36933 * 125.64548 * 298.38819 * 20 3 2 22 22 H 1.07992 * 120.00300 * 332.39204 * 21 20 3 23 23 C 1.38817 * 119.99681 * 152.39221 * 21 20 3 24 24 N 1.31611 * 120.00170 * 170.70803 * 23 21 20 25 25 Si 1.86806 * 119.99874 * 350.70540 * 23 21 20 26 26 H 1.48496 * 109.46866 * 185.76722 * 25 23 21 27 27 H 1.48499 * 109.46823 * 65.76734 * 25 23 21 28 28 H 1.48497 * 109.47143 * 305.77102 * 25 23 21 29 29 H 1.08999 * 109.47374 * 172.49252 * 1 2 3 30 30 H 1.09005 * 109.46620 * 292.49557 * 1 2 3 31 31 H 1.09009 * 109.47143 * 52.48683 * 1 2 3 32 32 H 1.09002 * 109.46982 * 240.00800 * 2 1 3 33 33 H 1.08994 * 109.47398 * 120.00593 * 2 1 3 34 34 H 0.96995 * 120.00064 * 20.23143 * 7 5 3 35 35 H 1.08992 * 109.47075 * 59.99745 * 11 10 8 36 36 H 1.09000 * 109.46992 * 180.02562 * 11 10 8 37 37 H 1.09007 * 109.46812 * 299.99619 * 11 10 8 38 38 H 1.09005 * 109.60249 * 292.48985 * 12 10 8 39 39 H 1.08994 * 109.60382 * 52.98351 * 12 10 8 40 40 H 1.08996 * 109.30689 * 171.06392 * 13 12 10 41 41 H 1.09000 * 109.30033 * 290.65120 * 13 12 10 42 42 H 0.96999 * 117.94156 * 160.92485 * 14 13 12 43 43 H 1.09005 * 109.44621 * 222.37083 * 17 15 14 44 44 H 1.09001 * 109.35591 * 102.63258 * 17 15 14 45 45 H 1.09001 * 111.00691 * 277.23454 * 18 5 3 46 46 H 1.09001 * 111.03626 * 153.39996 * 18 5 3 47 47 H 1.08998 * 110.36379 * 204.14796 * 19 18 5 48 48 H 1.09000 * 110.36545 * 81.83533 * 19 18 5 49 49 H 0.97008 * 120.00025 * 5.61182 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6099 1.9900 -0.8387 5 6 3.5800 1.4576 -0.1010 6 1 3.9951 0.5128 0.2498 7 7 4.0134 1.7345 -1.4728 8 6 5.2576 1.3983 -1.8673 9 8 6.0184 0.8669 -1.0864 10 6 5.7033 1.6826 -3.2785 11 6 4.7946 0.9452 -4.2641 12 6 7.1527 1.2180 -3.4656 13 6 7.5216 1.3482 -4.9439 14 7 7.1916 2.6797 -5.4367 15 6 6.3367 3.5087 -4.8365 16 8 6.1093 4.5779 -5.3618 17 6 5.6387 3.1884 -3.5457 18 6 3.9811 2.6190 0.8464 19 6 2.9167 2.4899 1.9645 20 7 1.6792 2.1003 1.2644 21 6 0.4049 2.3110 1.7191 22 1 -0.4092 2.4126 1.0168 23 6 0.1594 2.3939 3.0829 24 7 -1.0229 2.7761 3.5167 25 14 1.5073 1.9631 4.3024 26 1 0.9566 1.9966 5.6811 27 1 2.6127 2.9479 4.1867 28 1 2.0241 0.6023 4.0086 29 1 -0.3634 -1.0188 -0.1343 30 1 -0.3633 0.3932 0.9495 31 1 -0.3634 0.6258 -0.8152 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.4051 2.1598 -2.0972 35 1 3.7669 1.2842 -4.1342 36 1 5.1201 1.1527 -5.2834 37 1 4.8499 -0.1272 -4.0766 38 1 7.8167 1.8415 -2.8667 39 1 7.2460 0.1773 -3.1557 40 1 8.5906 1.1739 -5.0652 41 1 6.9679 0.6068 -5.5200 42 1 7.6212 2.9819 -6.2522 43 1 4.5963 3.5004 -3.6097 44 1 6.1257 3.7222 -2.7296 45 1 3.9016 3.5812 0.3405 46 1 4.9852 2.4708 1.2438 47 1 2.7812 3.4454 2.4713 48 1 3.2077 1.7191 2.6781 49 1 -1.7468 2.9212 2.8875 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087621609.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:00 Heat of formation + Delta-G solvation = -57.980004 kcal Electronic energy + Delta-G solvation = -29159.580704 eV Core-core repulsion = 25314.672003 eV Total energy + Delta-G solvation = -3844.908701 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.33317 -39.71057 -38.24264 -36.81994 -34.54276 -33.98929 -32.57790 -32.15856 -30.11155 -29.23129 -28.25350 -27.20583 -25.10899 -24.15358 -23.07249 -22.11723 -21.01002 -20.40462 -19.43314 -18.70038 -17.80678 -17.50965 -16.86908 -16.63369 -16.23933 -15.72316 -15.18356 -15.11542 -15.01129 -14.48678 -13.94782 -13.85411 -13.70851 -13.44607 -13.26276 -13.12819 -12.98736 -12.51306 -12.48870 -12.21847 -12.09182 -11.84170 -11.79168 -11.49120 -11.38104 -11.29467 -11.27073 -10.90952 -10.56169 -10.45720 -10.32916 -10.15361 -9.99591 -9.68725 -9.48077 -9.45844 -9.04412 -8.90325 -8.55492 -7.09199 -6.27296 -3.37628 2.30037 2.52414 2.89948 3.05140 3.41314 3.50318 3.68303 4.03583 4.15188 4.25002 4.34169 4.57412 4.64829 4.71015 4.86104 4.96438 5.03112 5.12681 5.18169 5.20589 5.23236 5.33828 5.35007 5.42819 5.54211 5.57657 5.67499 5.75741 5.80559 5.85411 5.90664 6.04379 6.11911 6.27646 6.36072 6.37695 6.48426 6.57199 6.58039 6.70247 6.71395 6.92394 6.97818 7.28017 7.49539 7.81205 7.85279 8.16860 8.31858 8.99094 9.50080 10.22501 11.13846 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.021874 B = 0.003174 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.774872 B = 8818.734426 C = 8913.384657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.157 3.843 4 H 0.040 0.960 5 C 0.133 3.867 6 H 0.095 0.905 7 N -0.711 5.711 8 C 0.525 3.475 9 O -0.536 6.536 10 C -0.082 4.082 11 C -0.147 4.147 12 C -0.113 4.113 13 C 0.108 3.892 14 N -0.721 5.721 15 C 0.527 3.473 16 O -0.555 6.555 17 C -0.125 4.125 18 C -0.140 4.140 19 C 0.109 3.891 20 N -0.600 5.600 21 C -0.313 4.313 22 H 0.074 0.926 23 C -0.015 4.015 24 N -0.926 5.926 25 Si 1.066 2.934 26 H -0.300 1.300 27 H -0.285 1.285 28 H -0.292 1.292 29 H 0.030 0.970 30 H 0.092 0.908 31 H 0.038 0.962 32 H 0.041 0.959 33 H 0.057 0.943 34 H 0.399 0.601 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.400 0.600 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.065 0.935 48 H 0.026 0.974 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.211 -5.130 -17.560 24.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C 0.050 3.950 4 H 0.058 0.942 5 C 0.028 3.972 6 H 0.113 0.887 7 N -0.361 5.361 8 C 0.310 3.690 9 O -0.413 6.413 10 C -0.086 4.086 11 C -0.205 4.205 12 C -0.151 4.151 13 C -0.016 4.016 14 N -0.373 5.373 15 C 0.314 3.686 16 O -0.433 6.433 17 C -0.165 4.165 18 C -0.180 4.180 19 C -0.016 4.016 20 N -0.327 5.327 21 C -0.441 4.441 22 H 0.092 0.908 23 C -0.216 4.216 24 N -0.566 5.566 25 Si 0.898 3.102 26 H -0.228 1.228 27 H -0.212 1.212 28 H -0.219 1.219 29 H 0.049 0.951 30 H 0.111 0.889 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.234 0.766 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.235 0.765 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.083 0.917 48 H 0.044 0.956 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.766 -5.053 -15.388 23.312 hybrid contribution -0.495 0.160 -2.233 2.293 sum 16.271 -4.893 -17.621 24.478 Atomic orbital electron populations 1.21907 0.95499 0.99059 1.04328 1.21876 0.97166 0.97322 0.99847 1.21191 0.89701 0.92553 0.91560 0.94215 1.22135 0.95649 0.99110 0.80286 0.88725 1.46051 1.14310 1.61799 1.13987 1.20182 0.81919 0.78265 0.88649 1.90708 1.53135 1.42721 1.54710 1.20920 0.97788 0.95879 0.93965 1.21985 0.99077 1.00962 0.98442 1.21748 0.93940 1.04431 0.94947 1.21494 1.01188 0.83654 0.95265 1.45494 1.45521 1.17120 1.29169 1.19951 0.78731 0.83606 0.86325 1.90788 1.63652 1.23973 1.64875 1.21761 1.03487 0.95099 0.96201 1.23137 0.99070 0.98204 0.97555 1.22187 0.86568 0.98668 0.94147 1.44742 1.01776 1.66088 1.20116 1.19986 0.83197 1.48411 0.92466 0.90806 1.26099 1.01567 0.97891 0.96058 1.70925 1.02311 1.46031 1.37366 0.83851 0.74227 0.76581 0.75505 1.22765 1.21182 1.21908 0.95060 0.88893 0.94307 0.94044 0.92424 0.76635 0.91432 0.91152 0.91153 0.90117 0.88519 0.90054 0.91046 0.76495 0.87369 0.87486 0.91107 0.91248 0.91669 0.95622 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.05 37.15 0.34 -2.50 16 2 C -0.12 -2.18 5.46 -26.73 -0.15 -2.33 16 3 C 0.16 2.88 3.00 -66.94 -0.20 2.68 16 4 H 0.04 0.72 7.70 -51.93 -0.40 0.32 16 5 C 0.13 2.10 2.76 -66.09 -0.18 1.92 16 6 H 0.09 1.62 7.39 -51.93 -0.38 1.23 16 7 N -0.71 -8.71 5.02 -52.02 -0.26 -8.97 16 8 C 0.52 6.25 6.46 -10.98 -0.07 6.18 16 9 O -0.54 -8.26 15.62 5.55 0.09 -8.18 16 10 C -0.08 -0.68 0.63 -155.45 -0.10 -0.78 16 11 C -0.15 -1.01 7.72 37.16 0.29 -0.72 16 12 C -0.11 -0.80 4.34 -26.59 -0.12 -0.92 16 13 C 0.11 0.52 6.39 -4.48 -0.03 0.49 16 14 N -0.72 -4.90 5.24 -61.38 -0.32 -5.22 16 15 C 0.53 5.26 7.15 -11.86 -0.08 5.18 16 16 O -0.55 -7.91 17.78 5.56 0.10 -7.81 16 17 C -0.13 -1.11 4.64 -28.10 -0.13 -1.24 16 18 C -0.14 -2.36 6.77 -24.58 -0.17 -2.53 16 19 C 0.11 2.28 4.50 -2.53 -0.01 2.27 16 20 N -0.60 -13.54 2.89 -162.57 -0.47 -14.01 16 21 C -0.31 -8.26 7.70 -15.06 -0.12 -8.37 16 22 H 0.07 2.07 7.42 -52.49 -0.39 1.69 16 23 C -0.02 -0.43 5.50 -17.43 -0.10 -0.52 16 24 N -0.93 -28.04 13.70 55.49 0.76 -27.28 16 25 Si 1.07 26.05 24.68 -169.99 -4.19 21.86 16 26 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 27 H -0.28 -6.40 5.55 56.52 0.31 -6.09 16 28 H -0.29 -6.93 7.03 56.52 0.40 -6.53 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.09 2.11 5.49 -51.93 -0.28 1.83 16 31 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.40 4.12 7.49 -40.82 -0.31 3.81 16 35 H 0.07 0.45 7.58 -51.93 -0.39 0.06 16 36 H 0.07 0.43 5.89 -51.93 -0.31 0.12 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 39 H 0.10 0.71 7.89 -51.93 -0.41 0.30 16 40 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 0.27 6.85 -51.93 -0.36 -0.09 16 42 H 0.40 2.30 8.80 -40.82 -0.36 1.94 16 43 H 0.11 0.91 7.91 -51.93 -0.41 0.50 16 44 H 0.11 0.98 8.09 -51.93 -0.42 0.56 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.07 1.44 6.48 -51.93 -0.34 1.10 16 48 H 0.03 0.56 5.48 -51.93 -0.28 0.27 16 49 H 0.26 7.85 8.73 -40.82 -0.36 7.49 16 LS Contribution 369.15 15.07 5.56 5.56 Total: -1.00 -33.48 369.15 -7.65 -41.13 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -8.09 Total: 4.11 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -0.82 Total: -1.20 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.29 Total: -55.48 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.19 Total: -15.99 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: -4.19 Total: 21.86 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.48 -7.65 -41.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087621609.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.848 kcal (2) G-P(sol) polarization free energy of solvation -33.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds