Wall clock time and date at job start Tue Mar 31 2020 04:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47270 * 2 1 4 4 H 1.08995 * 109.99322 * 55.36676 * 3 2 1 5 5 C 1.54321 * 109.88427 * 294.26732 * 3 2 1 6 6 H 1.09010 * 110.87137 * 336.82860 * 5 3 2 7 7 N 1.46497 * 110.71978 * 100.02226 * 5 3 2 8 8 C 1.34780 * 120.00524 * 199.97431 * 7 5 3 9 9 O 1.21282 * 119.99205 * 0.02562 * 8 7 5 10 10 C 1.50692 * 120.00343 * 179.72549 * 8 7 5 11 11 C 1.53006 * 109.67368 * 299.56103 * 10 8 7 12 12 C 1.53347 * 109.67452 * 60.06004 * 10 8 7 13 13 C 1.53006 * 108.62339 * 52.23017 * 12 10 8 14 14 N 1.45751 * 110.50228 * 50.75422 * 13 12 10 15 15 C 1.33353 * 124.10644 * 340.89012 * 14 13 12 16 16 O 1.21281 * 118.24432 * 182.26762 * 15 14 13 17 17 C 1.50181 * 123.50829 * 2.24689 * 15 14 13 18 18 C 1.55147 * 102.94306 * 218.38971 * 5 3 2 19 19 C 1.54905 * 101.58522 * 35.50291 * 18 5 3 20 20 N 1.47022 * 109.88230 * 176.45989 * 3 2 1 21 21 C 1.36938 * 125.64793 * 298.39699 * 20 3 2 22 22 H 1.08000 * 120.00091 * 345.62248 * 21 20 3 23 23 C 1.38813 * 119.99888 * 165.63168 * 21 20 3 24 24 N 1.31613 * 120.00162 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99926 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47264 * 59.99589 * 25 23 21 27 27 H 1.48495 * 109.47362 * 179.97438 * 25 23 21 28 28 H 1.48506 * 109.46973 * 299.99691 * 25 23 21 29 29 H 1.09001 * 109.47247 * 183.97079 * 1 2 3 30 30 H 1.09000 * 109.46685 * 303.96247 * 1 2 3 31 31 H 1.08991 * 109.47388 * 63.95880 * 1 2 3 32 32 H 1.09005 * 109.47212 * 240.00433 * 2 1 3 33 33 H 1.08997 * 109.47858 * 120.00775 * 2 1 3 34 34 H 0.97004 * 119.99907 * 19.97622 * 7 5 3 35 35 H 1.08996 * 109.46952 * 59.99862 * 11 10 8 36 36 H 1.09000 * 109.47029 * 179.97438 * 11 10 8 37 37 H 1.08996 * 109.46861 * 300.00168 * 11 10 8 38 38 H 1.08999 * 109.60651 * 171.96031 * 12 10 8 39 39 H 1.08999 * 109.60075 * 292.44421 * 12 10 8 40 40 H 1.09003 * 109.29880 * 290.43067 * 13 12 10 41 41 H 1.09003 * 109.11604 * 170.96032 * 13 12 10 42 42 H 0.96993 * 117.94622 * 160.91560 * 14 13 12 43 43 H 1.08999 * 109.40088 * 222.28398 * 17 15 14 44 44 H 1.09004 * 109.32721 * 102.49822 * 17 15 14 45 45 H 1.09011 * 111.00495 * 153.57840 * 18 5 3 46 46 H 1.09004 * 111.00538 * 277.38759 * 18 5 3 47 47 H 1.09003 * 110.36493 * 81.82597 * 19 18 5 48 48 H 1.08995 * 110.36953 * 204.04243 * 19 18 5 49 49 H 0.97001 * 120.00545 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6154 1.9879 0.8428 5 6 1.6527 2.1362 -1.3230 6 1 1.4827 1.4024 -2.1110 7 7 0.4690 2.9795 -1.1388 8 6 -0.2691 3.3472 -2.2049 9 8 0.0464 2.9793 -3.3167 10 6 -1.4902 4.2095 -2.0147 11 6 -2.4955 3.4878 -1.1150 12 6 -1.0862 5.5421 -1.3724 13 6 0.0487 6.1565 -2.1943 14 7 -0.3053 6.1909 -3.6077 15 6 -1.2625 5.4426 -4.1572 16 8 -1.4404 5.5263 -5.3540 17 6 -2.1316 4.5014 -3.3735 18 6 2.9002 3.0026 -1.6393 19 6 4.0468 2.0954 -1.1276 20 7 3.5077 1.4539 0.0854 21 6 4.2509 0.9512 1.1198 22 1 3.7758 0.7122 2.0598 23 6 5.6149 0.7488 0.9603 24 7 6.1938 1.0397 -0.1853 25 14 6.6288 0.0637 2.3717 26 1 6.1093 -1.2751 2.7502 27 1 8.0472 -0.0577 1.9490 28 1 6.5358 0.9786 3.5377 29 1 -0.3634 -1.0252 0.0712 30 1 -0.3633 0.5741 0.8524 31 1 -0.3634 0.4511 -0.9232 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.2165 3.2735 -0.2495 35 1 -2.0384 3.2895 -0.1456 36 1 -3.3769 4.1145 -0.9793 37 1 -2.7870 2.5455 -1.5788 38 1 -1.9407 6.2188 -1.3656 39 1 -0.7467 5.3677 -0.3514 40 1 0.9519 5.5604 -2.0634 41 1 0.2336 7.1721 -1.8443 42 1 0.1864 6.7958 -4.1848 43 1 -2.2473 3.5696 -3.9271 44 1 -3.1105 4.9562 -3.2216 45 1 2.9911 3.1801 -2.7110 46 1 2.8715 3.9440 -1.0906 47 1 4.2976 1.3429 -1.8752 48 1 4.9244 2.6942 -0.8839 49 1 7.1469 0.8979 -0.2970 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087621610.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:36:02 Heat of formation + Delta-G solvation = -61.811776 kcal Electronic energy + Delta-G solvation = -29681.191594 eV Core-core repulsion = 25836.116735 eV Total energy + Delta-G solvation = -3845.074859 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 323.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.23539 -39.29173 -37.87688 -36.44840 -34.34663 -34.03024 -32.78900 -31.70574 -29.88850 -29.05857 -28.20437 -26.64685 -24.74984 -23.96643 -23.28543 -21.98957 -20.68164 -20.18010 -19.96364 -18.71412 -17.53921 -16.92660 -16.44688 -16.29463 -15.92527 -15.63748 -14.92393 -14.82747 -14.34937 -14.13396 -14.05514 -13.80299 -13.58528 -13.37997 -13.17269 -12.87541 -12.75516 -12.54644 -12.21158 -12.06201 -11.98419 -11.86215 -11.68893 -11.53348 -11.17823 -11.08454 -10.92114 -10.87081 -10.64475 -10.49009 -10.30379 -10.13518 -9.83925 -9.80806 -9.69402 -9.54072 -9.16857 -8.69374 -8.60191 -6.85350 -5.79025 -3.15801 2.65443 2.69925 3.17765 3.24454 3.36270 3.41278 3.42301 4.15173 4.26498 4.28214 4.44795 4.48894 4.77791 4.97282 5.05550 5.20430 5.22891 5.28066 5.31440 5.35783 5.41735 5.46490 5.48821 5.50975 5.65657 5.69798 5.73248 5.76269 5.79682 5.81391 6.00871 6.17374 6.25992 6.36137 6.41906 6.52591 6.63073 6.67523 6.69403 6.90641 7.09990 7.24926 7.46398 7.56362 7.66292 7.74741 8.17884 8.22029 8.34921 9.13905 9.75082 10.42613 11.32666 Molecular weight = 323.20amu Principal moments of inertia in cm(-1) A = 0.020591 B = 0.003483 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.514822 B = 8036.550182 C = 8633.707272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.034 0.966 5 C 0.139 3.861 6 H 0.091 0.909 7 N -0.711 5.711 8 C 0.519 3.481 9 O -0.531 6.531 10 C -0.087 4.087 11 C -0.140 4.140 12 C -0.124 4.124 13 C 0.103 3.897 14 N -0.718 5.718 15 C 0.533 3.467 16 O -0.560 6.560 17 C -0.111 4.111 18 C -0.155 4.155 19 C 0.174 3.826 20 N -0.593 5.593 21 C -0.230 4.230 22 H 0.074 0.926 23 C -0.002 4.002 24 N -0.916 5.916 25 Si 0.910 3.090 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.285 1.285 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.396 0.604 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.399 0.601 43 H 0.110 0.890 44 H 0.104 0.896 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.027 0.973 48 H 0.074 0.926 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.221 9.394 1.084 19.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C 0.054 3.946 4 H 0.052 0.948 5 C 0.035 3.965 6 H 0.109 0.891 7 N -0.361 5.361 8 C 0.304 3.696 9 O -0.407 6.407 10 C -0.090 4.090 11 C -0.197 4.197 12 C -0.162 4.162 13 C -0.022 4.022 14 N -0.370 5.370 15 C 0.320 3.680 16 O -0.438 6.438 17 C -0.152 4.152 18 C -0.194 4.194 19 C 0.049 3.951 20 N -0.318 5.318 21 C -0.359 4.359 22 H 0.092 0.908 23 C -0.199 4.199 24 N -0.562 5.562 25 Si 0.740 3.260 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.211 1.211 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.230 0.770 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.100 0.900 42 H 0.234 0.766 43 H 0.128 0.872 44 H 0.122 0.878 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.045 0.955 48 H 0.092 0.908 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.939 8.943 -0.149 19.155 hybrid contribution 0.819 -0.124 1.081 1.361 sum -16.120 8.820 0.931 18.398 Atomic orbital electron populations 1.21767 0.97273 1.00533 1.00833 1.22023 0.93578 0.99215 1.02429 1.21052 0.87165 0.93321 0.93026 0.94824 1.22100 0.83397 0.92355 0.98682 0.89110 1.46056 1.28393 1.52331 1.09318 1.20205 0.83841 0.80620 0.84952 1.90754 1.70738 1.55072 1.24176 1.20994 0.95110 0.95811 0.97115 1.21842 0.98133 1.00816 0.98925 1.22007 0.99329 0.95118 0.99776 1.21458 0.98079 1.02056 0.80563 1.45349 1.37778 1.43630 1.10286 1.19922 0.80281 0.79821 0.87968 1.90740 1.70118 1.67465 1.15523 1.21560 0.98483 1.00880 0.94231 1.23402 0.96837 0.98952 1.00257 1.21423 0.93089 0.92959 0.87619 1.44431 0.98361 1.68582 1.20416 1.18881 0.89882 1.36334 0.90777 0.90772 1.24900 0.97181 1.00835 0.96967 1.69912 1.10367 1.52678 1.23243 0.86246 0.79387 0.79071 0.81298 1.21083 1.21590 1.21122 0.93705 0.93479 0.93295 0.92415 0.91702 0.76990 0.91372 0.91122 0.91440 0.89663 0.88973 0.91065 0.90028 0.76586 0.87184 0.87779 0.92030 0.92180 0.95510 0.90794 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.63 37.16 0.36 -1.64 16 2 C -0.13 -2.35 5.42 -26.73 -0.14 -2.49 16 3 C 0.16 3.02 2.93 -66.95 -0.20 2.82 16 4 H 0.03 0.60 7.69 -51.93 -0.40 0.20 16 5 C 0.14 2.33 1.93 -66.10 -0.13 2.20 16 6 H 0.09 1.72 7.35 -51.92 -0.38 1.34 16 7 N -0.71 -8.88 4.70 -52.04 -0.24 -9.13 16 8 C 0.52 6.70 4.83 -10.99 -0.05 6.65 16 9 O -0.53 -9.38 14.96 5.56 0.08 -9.30 16 10 C -0.09 -0.77 0.64 -155.45 -0.10 -0.87 16 11 C -0.14 -0.90 8.39 37.16 0.31 -0.59 16 12 C -0.12 -0.82 4.82 -26.55 -0.13 -0.94 16 13 C 0.10 0.85 6.60 -4.44 -0.03 0.82 16 14 N -0.72 -7.82 5.44 -61.34 -0.33 -8.15 16 15 C 0.53 7.21 6.82 -11.87 -0.08 7.13 16 16 O -0.56 -9.96 17.78 5.56 0.10 -9.86 16 17 C -0.11 -1.17 4.46 -28.10 -0.13 -1.30 16 18 C -0.15 -2.87 6.77 -24.59 -0.17 -3.04 16 19 C 0.17 4.08 5.41 -2.53 -0.01 4.07 16 20 N -0.59 -14.07 3.13 -162.58 -0.51 -14.57 16 21 C -0.23 -6.04 9.74 -15.06 -0.15 -6.19 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C 0.00 -0.04 5.47 -17.43 -0.10 -0.14 16 24 N -0.92 -26.07 10.56 55.49 0.59 -25.49 16 25 Si 0.91 21.33 29.55 -169.99 -5.02 16.31 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.66 7.32 -51.93 -0.38 0.28 16 32 H 0.06 1.12 8.06 -51.93 -0.42 0.70 16 33 H 0.06 1.24 7.89 -51.93 -0.41 0.83 16 34 H 0.40 3.97 7.38 -40.82 -0.30 3.67 16 35 H 0.07 0.39 7.61 -51.93 -0.40 -0.01 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 39 H 0.09 0.46 7.81 -51.93 -0.41 0.05 16 40 H 0.07 0.74 7.37 -51.93 -0.38 0.35 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.40 4.07 8.80 -40.82 -0.36 3.72 16 43 H 0.11 1.35 7.73 -51.93 -0.40 0.95 16 44 H 0.10 0.79 8.10 -51.93 -0.42 0.37 16 45 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.03 0.70 8.07 -51.93 -0.42 0.28 16 48 H 0.07 1.93 6.91 -51.93 -0.36 1.57 16 49 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 380.64 15.07 5.74 5.74 Total: -1.00 -33.93 380.64 -8.70 -42.63 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -8.36 Total: 5.32 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -0.74 Total: 6.50 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.50 Total: -57.34 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: 0.18 Total: -19.16 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.93 -8.70 -42.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087621610.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.178 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds