Wall clock time and date at job start Tue Mar 31 2020 06:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00262 * 2 1 4 4 H 1.48506 * 109.47197 * 240.00176 * 3 2 1 5 5 H 1.48507 * 109.46806 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47292 * 119.99836 * 3 2 1 7 7 C 1.37882 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99728 * 175.28320 * 7 2 1 9 9 C 1.50689 * 120.00016 * 355.55725 * 7 2 1 10 10 C 1.52999 * 115.55277 * 274.99109 * 9 7 2 11 11 N 1.46493 * 109.47473 * 294.33549 * 10 9 7 12 12 S 1.65595 * 120.00439 * 159.12475 * 11 10 9 13 13 O 1.42102 * 106.40643 * 178.53964 * 12 11 10 14 14 O 1.42106 * 106.40281 * 311.45940 * 12 11 10 15 15 C 1.76200 * 107.21967 * 64.99679 * 12 11 10 16 16 C 1.38352 * 119.85900 * 269.73098 * 15 12 11 17 17 C 1.37960 * 120.14998 * 179.72201 * 16 15 12 18 18 C 1.39571 * 119.84912 * 0.54639 * 17 16 15 19 19 C 1.47846 * 120.14259 * 179.70513 * 18 17 16 20 20 N 1.34766 * 120.00373 * 0.02562 * 19 18 17 21 21 O 1.21561 * 119.99801 * 180.02562 * 19 18 17 22 22 C 1.39577 * 119.71111 * 359.72728 * 18 17 16 23 23 C 1.37955 * 119.85683 * 0.02562 * 22 18 17 24 24 C 1.53000 * 117.49861 * 129.32345 * 9 7 2 25 25 C 1.53006 * 117.50223 * 60.66429 * 9 7 2 26 26 H 0.97004 * 120.00308 * 5.00830 * 1 2 3 27 27 H 1.09003 * 109.46842 * 54.33739 * 10 9 7 28 28 H 1.09001 * 109.47693 * 174.33211 * 10 9 7 29 29 H 0.97003 * 120.00052 * 339.12410 * 11 10 9 30 30 H 1.08003 * 119.92272 * 0.02562 * 16 15 12 31 31 H 1.08001 * 120.07437 * 180.24970 * 17 16 15 32 32 H 0.97003 * 119.99987 * 0.02562 * 20 19 18 33 33 H 0.97001 * 120.00530 * 179.97438 * 20 19 18 34 34 H 1.08008 * 120.07226 * 179.97438 * 22 18 17 35 35 H 1.07995 * 119.92949 * 179.97438 * 23 22 18 36 36 H 1.09002 * 117.49929 * 0.02562 * 24 9 7 37 37 H 1.09003 * 117.49841 * 145.01830 * 24 9 7 38 38 H 1.08990 * 117.50314 * 214.97796 * 25 9 7 39 39 H 1.09002 * 117.49018 * 359.97438 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0817 -1.1957 -0.0775 9 6 1.2544 -2.4972 0.1000 10 6 0.9143 -2.9551 1.5197 11 7 2.1506 -3.2608 2.2436 12 16 2.1584 -3.2761 3.8994 13 8 3.4765 -3.6346 4.2913 14 8 1.5240 -2.0743 4.3149 15 6 1.1101 -4.5955 4.4139 16 6 -0.2359 -4.3610 4.6317 17 6 -1.0633 -5.3910 5.0291 18 6 -0.5374 -6.6694 5.2223 19 6 -1.4169 -7.7764 5.6544 20 7 -2.7296 -7.5525 5.8620 21 8 -0.9561 -8.8887 5.8223 22 6 0.8225 -6.8979 5.0063 23 6 1.6379 -5.8604 4.6041 24 6 1.5759 -3.5789 -0.9331 25 6 0.2483 -2.8205 -1.0066 26 1 -0.4851 0.8368 -0.0733 27 1 0.3763 -2.1615 2.0383 28 1 0.2899 -3.8474 1.4740 29 1 2.9647 -3.4543 1.7530 30 1 -0.6407 -3.3705 4.4857 31 1 -2.1145 -5.2075 5.1949 32 1 -3.0974 -6.6651 5.7277 33 1 -3.3067 -8.2789 6.1451 34 1 1.2356 -7.8848 5.1544 35 1 2.6903 -6.0358 4.4371 36 1 2.3304 -3.3482 -1.6853 37 1 1.5449 -4.6168 -0.6014 38 1 -0.6555 -3.3596 -0.7233 39 1 0.1289 -2.0903 -1.8070 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429981663.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:01 Heat of formation + Delta-G solvation = -60.988368 kcal Electronic energy + Delta-G solvation = -25017.035781 eV Core-core repulsion = 21245.364647 eV Total energy + Delta-G solvation = -3771.671133 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 324.098 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -40.41869 -38.45660 -37.17587 -36.82938 -35.52734 -34.29334 -33.37484 -31.92961 -31.54159 -31.25219 -26.03057 -24.93601 -24.85992 -23.03933 -21.21200 -21.13120 -19.50238 -19.18649 -18.63904 -17.60326 -17.21118 -17.04749 -16.26847 -15.60178 -15.38788 -15.14219 -14.88373 -14.60428 -14.47785 -14.16668 -13.82269 -13.60066 -13.22316 -13.11268 -13.04277 -12.29416 -12.08623 -11.79487 -11.70461 -11.49066 -11.31537 -10.97766 -10.93128 -10.89529 -10.53177 -10.44863 -10.25609 -10.15067 -9.66286 -9.58788 -9.33341 -9.20941 -8.70009 -8.46307 -8.19800 -6.06379 -4.14031 0.09933 0.71704 1.03257 2.33994 3.04150 3.28390 3.31677 3.36545 3.40511 3.52939 4.03345 4.29806 4.37044 4.39384 4.58234 4.72865 5.00038 5.20223 5.22068 5.26295 5.30366 5.65706 5.73850 5.82834 5.84365 5.88411 6.17068 6.19825 6.30205 6.32490 6.44454 6.48112 6.66964 6.86512 6.95172 7.04594 7.34158 7.52274 7.60490 7.79530 7.84623 8.35228 8.86409 9.52873 11.01157 Molecular weight = 324.10amu Principal moments of inertia in cm(-1) A = 0.017771 B = 0.003588 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.254141 B = 7802.813037 C = 8276.199701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.074 3.926 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.495 4.495 8 H 0.060 0.940 9 C 0.034 3.966 10 C 0.158 3.842 11 N -1.090 6.090 12 S 2.688 3.312 13 O -0.968 6.968 14 O -0.949 6.949 15 C -0.649 4.649 16 C -0.025 4.025 17 C -0.109 4.109 18 C -0.094 4.094 19 C 0.562 3.438 20 N -0.848 5.848 21 O -0.535 6.535 22 C -0.083 4.083 23 C -0.026 4.026 24 C -0.212 4.212 25 C -0.144 4.144 26 H 0.262 0.738 27 H 0.083 0.917 28 H 0.034 0.966 29 H 0.418 0.582 30 H 0.151 0.849 31 H 0.135 0.865 32 H 0.404 0.596 33 H 0.407 0.593 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 -11.785 9.035 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.130 4.130 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.533 4.533 8 H 0.078 0.922 9 C 0.032 3.968 10 C 0.032 3.968 11 N -0.852 5.852 12 S 2.775 3.225 13 O -0.958 6.958 14 O -0.938 6.938 15 C -0.733 4.733 16 C -0.044 4.044 17 C -0.128 4.128 18 C -0.097 4.097 19 C 0.348 3.652 20 N -0.412 5.412 21 O -0.412 6.412 22 C -0.103 4.103 23 C -0.045 4.045 24 C -0.249 4.249 25 C -0.183 4.183 26 H 0.072 0.928 27 H 0.101 0.899 28 H 0.052 0.948 29 H 0.254 0.746 30 H 0.169 0.831 31 H 0.153 0.847 32 H 0.234 0.766 33 H 0.238 0.762 34 H 0.162 0.838 35 H 0.166 0.834 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.499 -11.715 9.838 15.946 hybrid contribution -0.345 0.397 -0.333 0.623 sum -4.844 -11.318 9.505 15.553 Atomic orbital electron populations 1.69949 1.05831 1.26996 1.48638 1.24951 0.94864 0.98945 0.94256 0.86717 0.79786 0.83145 0.78757 1.20342 1.21216 1.19893 1.20316 0.92721 0.88480 1.51782 0.92181 1.18924 0.99086 0.93414 0.85389 1.21009 0.82802 0.97381 0.95570 1.55089 1.20010 1.86387 1.23723 1.02137 0.73243 0.73944 0.73166 1.93558 1.35720 1.84629 1.81930 1.93610 1.77345 1.41670 1.81214 1.31626 1.10478 1.16813 1.14375 1.21005 0.91328 1.00047 0.92017 1.21388 1.00117 0.91933 0.99392 1.20173 0.94875 0.93577 1.01113 1.18295 0.82443 0.87928 0.76543 1.43755 1.09481 1.16051 1.71949 1.90834 1.75014 1.24168 1.51210 1.21384 0.92018 1.00124 0.96758 1.20976 1.00526 0.90453 0.92590 1.23031 1.00681 0.95534 1.05646 1.22494 0.90690 1.01376 1.03693 0.92849 0.89879 0.94805 0.74645 0.83118 0.84697 0.76644 0.76208 0.83774 0.83375 0.90326 0.91664 0.91910 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.61 12.65 55.43 0.70 -22.91 16 2 C 0.07 1.94 5.43 -17.82 -0.10 1.84 16 3 Si 0.89 20.78 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.50 -12.63 8.75 -34.44 -0.30 -12.93 16 8 H 0.06 1.53 7.82 -52.48 -0.41 1.12 16 9 C 0.03 0.75 1.49 -155.66 -0.23 0.52 16 10 C 0.16 3.08 6.09 -4.05 -0.02 3.06 16 11 N -1.09 -18.78 5.88 -10.62 -0.06 -18.85 16 12 S 2.69 44.24 5.74 -107.50 -0.62 43.62 16 13 O -0.97 -17.19 17.27 -57.17 -0.99 -18.18 16 14 O -0.95 -18.72 16.66 -57.17 -0.95 -19.67 16 15 C -0.65 -8.79 5.95 -39.49 -0.24 -9.02 16 16 C -0.02 -0.30 9.50 -39.64 -0.38 -0.68 16 17 C -0.11 -1.07 9.54 -39.19 -0.37 -1.44 16 18 C -0.09 -1.03 5.87 -104.97 -0.62 -1.65 16 19 C 0.56 6.00 8.05 -12.33 -0.10 5.90 16 20 N -0.85 -5.34 8.82 30.53 0.27 -5.07 16 21 O -0.54 -7.62 17.18 5.31 0.09 -7.52 16 22 C -0.08 -0.97 9.60 -39.19 -0.38 -1.34 16 23 C -0.03 -0.32 9.50 -39.64 -0.38 -0.70 16 24 C -0.21 -4.15 9.96 -26.69 -0.27 -4.41 16 25 C -0.14 -3.09 9.15 -26.69 -0.24 -3.33 16 26 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 27 H 0.08 1.80 7.64 -51.93 -0.40 1.41 16 28 H 0.03 0.57 8.09 -51.93 -0.42 0.15 16 29 H 0.42 6.76 8.70 -34.46 -0.30 6.46 16 30 H 0.15 1.75 7.60 -52.48 -0.40 1.35 16 31 H 0.14 0.80 6.41 -52.49 -0.34 0.46 16 32 H 0.40 1.51 6.86 -40.82 -0.28 1.22 16 33 H 0.41 1.96 8.93 -40.82 -0.36 1.60 16 34 H 0.14 1.53 7.65 -52.48 -0.40 1.13 16 35 H 0.15 1.59 7.60 -52.49 -0.40 1.19 16 36 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 LS Contribution 352.13 15.07 5.31 5.31 Total: -1.00 -33.77 352.13 -9.42 -43.19 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -4.53 Total: 8.50 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -3.62 Total: -24.18 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.91 Total: -46.83 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -1.85 Total: -45.37 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 44.24 SS G_CDS: -0.62 Total: 43.62 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.77 -9.42 -43.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429981663.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.795 kcal (2) G-P(sol) polarization free energy of solvation -33.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds